Basic Information

Insect: Thyatira batis
Gene Symbol: -
Assembly: GCA_905147785.1
Location: LR990515.1:822436-833302[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.25 19 6.4 5.2 1 23 402 424 402 424 0.96

2 12 0.014 1.1 10.4 6.1 1 23 431 453 431 453 0.97

3 12 8 6e+02 1.7 1.7 1 23 457 479 457 479 0.90

4 12 5.1e-05 0.0038 18.1 3.9 1 23 484 507 484 507 0.97

5 12 0.91 68 4.7 0.0 2 22 515 535 514 537 0.85

6 12 6.5 4.9e+02 2.0 2.3 3 20 547 564 545 565 0.94

7 12 0.36 27 5.9 0.0 2 19 576 593 575 595 0.93

8 12 0.011 0.86 10.7 2.6 1 20 604 623 604 626 0.95

9 12 0.00033 0.025 15.5 0.2 2 23 644 666 643 666 0.95

10 12 2.4e-07 1.8e-05 25.4 1.1 1 23 672 694 672 694 0.99

11 12 9.6e-06 0.00072 20.3 2.7 1 23 700 722 700 722 0.99

12 12 1e-05 0.00078 20.2 0.1 1 23 728 751 728 751 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.25	19	6.4	5.2	1	23	402	424	402	424	0.96
2	12	0.014	1.1	10.4	6.1	1	23	431	453	431	453	0.97
3	12	8	6e+02	1.7	1.7	1	23	457	479	457	479	0.90
4	12	5.1e-05	0.0038	18.1	3.9	1	23	484	507	484	507	0.97
5	12	0.91	68	4.7	0.0	2	22	515	535	514	537	0.85
6	12	6.5	4.9e+02	2.0	2.3	3	20	547	564	545	565	0.94
7	12	0.36	27	5.9	0.0	2	19	576	593	575	595	0.93
8	12	0.011	0.86	10.7	2.6	1	20	604	623	604	626	0.95
9	12	0.00033	0.025	15.5	0.2	2	23	644	666	643	666	0.95
10	12	2.4e-07	1.8e-05	25.4	1.1	1	23	672	694	672	694	0.99
11	12	9.6e-06	0.00072	20.3	2.7	1	23	700	722	700	722	0.99
12	12	1e-05	0.00078	20.2	0.1	1	23	728	751	728	751	0.95

Sequence Information

Coding Sequence: ATGAGATCTTTACGGGAAAATATTAGGCCGGCATTGCATGTTTGTCGAGGATGTCTAGCAACGGATGTCCGACTGCACGACATGAGGCAAAACCACTTGATGGAGGCATATGCGAGGCTGGTGGACCCTACAGATGATATAACACATTTTCTATGCAGCTACTGCGCCGCACTCCTGATCAAGTGGGACAGGTTCAGAATCAAATGCATAGATGCACTATTAATATTAAGAAACGCACAACTTGATAATCAAAATCTTACAATACAACATATAAGAAAGATAGACAGACATGCTAACAAATTTACTCTCCCATACACTGTTTCACAAACACGAGTAGTAAATATTGGTGAAAATAGTGTATTTATAGTTGAAAATGTAATAAAAAATAATGATCAATCTGATAATGATAACACTAAAACTAACGAAGAAGAATCAAAAATGACCACTGGAGAATATGATAACGAAGAACCTGAATACACAAATGAAGAATATTTGGAAGAATCTGATACTGAATCTTTAAATGTGATTAAAAGAGATGATACATTACTGAATACAGATGATGAAGCATTTATAAGTGATTTGATGAAGGAGTGTGATCCAAATTATGTTATAGATAACCGTAATACTATACTCAGTAATGCCTATGTAAAACCGGATTTTGTAATCAATTCAAGAACAAAAGACCACAATTATGCACAGACAACGAAAGGAACGAGACAGATCAGCGAGCTAGTAGAACAATATCTTGTGAATACAAACCGTAATCACATTTTAAATAACTATCAAGTAAACTTATATTGCAACAAGAGAACGCTTACAAAAATCAATGGAAATAAAGAAATGAAACTTAAAATAATGAACCAAGTGACAGCGAGCGAAATGAACAGTAAATTAATAAAATTGCTAGCGGGAAGCCAGATTGATTTGGCTGAGGAGAACGCTAAACTCAATCCCGCTATACCAAATATAACTAACAACGGACAGTATATTACAATAGATTTTAAAGCGACCATGAGTGAGAGTGCGTTAGATTTAGATGAATCGTTCCCCTTACCAATGGGTTCATACGAAAGTAAATATAGGATTGAGAACGAGAAATTTGCCAAAAATCATGGAATGGATATAGTCCATGCTTACACGGAGAAAGAACAAGTTTTGTTGATGCAAAGTAGGAAAGAAACAAATAATTATAAACACTGCAAATATAGATGTGAACATTGCTGCAGAGGATTTAATACTCAAGAGACTTATGATAATCATATGGCTTTTCATAGCGAGGTTAAAGGAAAATATAAGTGTAATATTTGCAAATATCATTTTAAAACCAAAGGCAGGTGGAAACTCCATAAAACTCGGCATTCGATCAGATTTTCCTGCAAATTATGCACTTTTACAACTAACTATAGAACGGTGGCAAGGAACCATTATTTGGGACATATTGGTGAAAAGTTCGCTTGTAAACACTGCGGGAAACAATTCAATCGTACTTCGAGTTATTACAGCCATTTGAAAACAGCTCATCCGACGAGTGAGGAGCTCATCCGATGTGAGATTTGTGGGGACTCCTTCAATGGCGCTGCTGGGATAAAACAGCATGAAGCTTTGGCCCATAAAGAGATGACATCTCCGGAGTGTCTATGCAGTAGTTGCGGCACGCAGTTCTACTGCTCCGACGCGTTGAAAGTGCATCAAGGTGCCGACGGAGCTTGCGACCCCAGAGCTAAGTATTGTGTGCGCTGCGGCGGCGCCTTCCGCACGCAACTGCAGCTGGAGGAGCACGAGGCTGAGCAACGGAAACCTAGGGACGTGTTCGAATGTGAAGTGTGTGAAAAGATATTCAACAACTATACATATTATAAAGCCCACCGCGCGTGTCACCGCAAGACCTCCCGAGACAAAGTCGGGAGGCGGCGGCTAGTGCAGCCGTCTATGTGCGAGATATGTGGTGCAGTATATAAGAATAATGCATTACTAAAGATGCATTACAAATACAAACATTCGAACGAGAAGCGTTACCAGTGCACTCAGTGCCCGAAGAAATTCAAAATACCCGAGAATTTGAAGAGCCACATTCGTACGCACACCGGGGAGCGGCCGTTTCGTTGCAAATATTGTACAAACACGTTTCAGAGTAACACCAACCTGGCAAGACACATTAGGATGCACACCCTAGATCGTCCATATTTATGTCCAGTTTGCGGTAAAGACTTCATGACTTCCGCCAACGTAAAGACGCACATGAAAATAGTACATATGAAGAAATCTATGCCTGAGAGAATTATAATAATTAATAAGAAACCTTAG
Protein Sequence: MRSLRENIRPALHVCRGCLATDVRLHDMRQNHLMEAYARLVDPTDDITHFLCSYCAALLIKWDRFRIKCIDALLILRNAQLDNQNLTIQHIRKIDRHANKFTLPYTVSQTRVVNIGENSVFIVENVIKNNDQSDNDNTKTNEEESKMTTGEYDNEEPEYTNEEYLEESDTESLNVIKRDDTLLNTDDEAFISDLMKECDPNYVIDNRNTILSNAYVKPDFVINSRTKDHNYAQTTKGTRQISELVEQYLVNTNRNHILNNYQVNLYCNKRTLTKINGNKEMKLKIMNQVTASEMNSKLIKLLAGSQIDLAEENAKLNPAIPNITNNGQYITIDFKATMSESALDLDESFPLPMGSYESKYRIENEKFAKNHGMDIVHAYTEKEQVLLMQSRKETNNYKHCKYRCEHCCRGFNTQETYDNHMAFHSEVKGKYKCNICKYHFKTKGRWKLHKTRHSIRFSCKLCTFTTNYRTVARNHYLGHIGEKFACKHCGKQFNRTSSYYSHLKTAHPTSEELIRCEICGDSFNGAAGIKQHEALAHKEMTSPECLCSSCGTQFYCSDALKVHQGADGACDPRAKYCVRCGGAFRTQLQLEEHEAEQRKPRDVFECEVCEKIFNNYTYYKAHRACHRKTSRDKVGRRRLVQPSMCEICGAVYKNNALLKMHYKYKHSNEKRYQCTQCPKKFKIPENLKSHIRTHTGERPFRCKYCTNTFQSNTNLARHIRMHTLDRPYLCPVCGKDFMTSANVKTHMKIVHMKKSMPERIIIINKKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -