Tbat012337.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990499.1:1090454-1094021[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.004 0.3 12.1 1.2 1 23 295 317 295 317 0.98 2 11 0.0026 0.19 12.7 1.6 1 19 332 350 332 354 0.91 3 11 1.2e-05 0.00093 20.0 2.8 2 23 360 381 359 381 0.97 4 11 5.1e-05 0.0038 18.1 1.1 1 23 385 408 385 408 0.97 5 11 0.084 6.3 7.9 1.7 1 23 411 433 411 433 0.97 6 11 0.00063 0.047 14.6 0.2 3 23 506 526 505 526 0.96 7 11 0.19 14 6.8 0.3 2 23 546 568 545 568 0.96 8 11 9.3e-07 7e-05 23.5 4.1 1 23 574 596 574 596 0.98 9 11 3e-05 0.0023 18.8 2.5 1 23 601 623 601 623 0.97 10 11 0.0064 0.48 11.4 4.1 2 21 630 649 629 652 0.95 11 11 0.0069 0.52 11.4 1.3 3 19 692 708 691 713 0.94
Sequence Information
- Coding Sequence
- ATGGAGTCGGGCGCCGCGGCGAGCGATAATGAAGAACTTTACCCGTTCCTTCTCATACCGAGAAAGTGTACAGCCCTCGAAACTAACTGTAACACATCTGAAAACGTATTCATTGATGTACATATCACATCACCAGACACTGAAGGTAATGAAACATGTATTTATTCCGGATTTTGTAACGTAAAGTTGATAGACAACTATAATATTGATGTCAATGATGATCAGAATGGAAATGTATGTGAAAATGATATGCCTGTTATCATATCGGAGGGCAACCAAGTTAGTTATCCGCCGTATAATCAATCTCAAGTGTGGATAGACCCGGCAAGGAGTCCGTATGTCTATAATAACTACAATCCAGCGGAACATTATTCAGTATACCACCAAACAACTCTTGGCCATATTACCGTAGAACAACACAATACGTATATAACCCAGAATGTTTATAATAAGAGTGAGAGCATCCATTACTCCGTGCCTGAAGAAGTTGAACACAAAAAGTTCCGTAGAACCCACGAGACGCAGAATACGGAGACAAACTACAACTCGTATGAAGATGATGAGTTTGAATGTGGAGTATTCCTGTCTAATTTGCCGGAGGAGATAATGAATGAGAAGGAGAATAGAGCTAGAGAGGAACGGAAGTATATAGGGCTCCAGAGCGATAATGGGGCGTTGAAACAGCTAATGTCTTCTGATATCCAGTCTATGTCGAAACAACGGAAGACTATATTGTTTTTAGGTCATGATTCCCAGTCTGGGCAGACGGTCCAGAATATTCTAGTGAATGACCCAATGTATGAATGCTCGGGTAACGGAGAGGTTGAAAATGAAGTTGTTATTGAAGAATTAGACCCACCACCCAACCCGCACCAAAAAAAATATCAATGCGACAAATGCAAACAACTATTCGATCAAATAACTGCATTCAAACAGCACATGGTCTCCCATAGATCTGTAATAATCGAAGATCACTCCAAAACTGAGGTAAAATATATGTGCACAGAGTGCGGGAAGACATTGAAGAACCAGGAGAAATTTGAGATACACTGCATGGGTCACGGTGACCCGGACTTAGAATGCAACAAATGTCACAAAGTATTCGCATCAAAGTTCACTTTACGCGCTCACCGTAAAATCCACAGCCGCAAATACATATGCCACCTCTGCATGAAGTCATACTCCACCCCAGAGGAGCTGAAGAACCATATGGAGAAGATACACTTCTATTTCTCATGCCATATCTGTTCGTTCGTTGCTAAGAAGTTCTCCGATATATCTAGACATCAGGAGGTTCATTTGGAAGGTGATGCTTCTAGTTCTATAGATGATAGTGAAACTGATATCATCACCCCGTCTCCAGAAGGGCATGCCACGGTGGAACATGAGGAAAGTAATGATTCACTCCAGAAAATATTTGATGCTGATTCTGTGATTGCGAAGGTGATGTCAAATAAGATATTTCTGCTTCACGCTAAGAAGGTCACTAAGAGACACAGGAGACAGAATAAGGCGTGCGACGTCTGTTTCAAGAAGTTCGAACGCATCGGCGACTTGAAACGGCATTTAATCGAGCATATCATCAAGAGTACACTATCAAAATCTCCGGTGAACATCGATGGAACACTCAACATAGAATGCGAGGTATGTCACATAGAAGTATTTAACAGAATCGACAGATACAAGGCCCATTTACGCGAACACGCCAAACTAACCTTATACAAATGCACTTTCTGCGATAAATCCTTCAGTGACTCCAGTAATTTTTCCAAACACAAAAAAATTCACGGCACAACATTCTTCCAATGCGATCTGTGCCAAAGGAAATTTAACTCTAAAAAGTCGTTGACACAGCACATTGAATACCATAACAATAATTCGCCCATCCAATGCCAGTATTGCGAAAAGATATTCCATTTCGAATCCATGTTAAATAAGCATATAAGATGTACTCACAATAAAGATGTCTTGTTGAAGTTTAGATGTAAATTTTGTCAGAGTTATTTTAGAGCATTAAAAGATAAATGGGACCATGAATGGTCAGTACATAATGTGAGGAAGATGATTGTAGATTGTCTCATATGTGGGGCAAAGTTTAGAAAGTATTCAGAACTTAAACGCCATTGTATTGATGAGCATAAACTCGATATTCCCCCAGCTAAGAAGCTTTTGAGGAGAAAAAAGTAG
- Protein Sequence
- MESGAAASDNEELYPFLLIPRKCTALETNCNTSENVFIDVHITSPDTEGNETCIYSGFCNVKLIDNYNIDVNDDQNGNVCENDMPVIISEGNQVSYPPYNQSQVWIDPARSPYVYNNYNPAEHYSVYHQTTLGHITVEQHNTYITQNVYNKSESIHYSVPEEVEHKKFRRTHETQNTETNYNSYEDDEFECGVFLSNLPEEIMNEKENRAREERKYIGLQSDNGALKQLMSSDIQSMSKQRKTILFLGHDSQSGQTVQNILVNDPMYECSGNGEVENEVVIEELDPPPNPHQKKYQCDKCKQLFDQITAFKQHMVSHRSVIIEDHSKTEVKYMCTECGKTLKNQEKFEIHCMGHGDPDLECNKCHKVFASKFTLRAHRKIHSRKYICHLCMKSYSTPEELKNHMEKIHFYFSCHICSFVAKKFSDISRHQEVHLEGDASSSIDDSETDIITPSPEGHATVEHEESNDSLQKIFDADSVIAKVMSNKIFLLHAKKVTKRHRRQNKACDVCFKKFERIGDLKRHLIEHIIKSTLSKSPVNIDGTLNIECEVCHIEVFNRIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKSLTQHIEYHNNNSPIQCQYCEKIFHFESMLNKHIRCTHNKDVLLKFRCKFCQSYFRALKDKWDHEWSVHNVRKMIVDCLICGAKFRKYSELKRHCIDEHKLDIPPAKKLLRRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00762000;
- 90% Identity
- -
- 80% Identity
- -