Basic Information

Insect: Thyatira batis
Gene Symbol: -
Assembly: GCA_905147785.1
Location: LR990500.1:6253041-6261690[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0076 0.57 11.2 1.7 1 20 6 26 6 28 0.92

2 12 0.15 11 7.1 0.3 1 12 202 213 202 222 0.86

3 12 0.00013 0.0095 16.8 2.5 1 23 381 403 381 403 0.99

4 12 0.0028 0.21 12.6 2.2 1 23 416 438 416 438 0.99

5 12 5.2 3.9e+02 2.3 1.5 1 10 463 472 463 484 0.72

6 12 2.3e-05 0.0017 19.2 0.5 3 23 492 512 490 512 0.96

7 12 0.0012 0.088 13.8 2.3 1 23 528 550 528 550 0.98

8 12 1.4e-06 0.0001 23.0 4.5 1 23 556 578 556 578 0.98

9 12 0.00038 0.029 15.3 5.4 1 23 584 606 584 606 0.97

10 12 1.9e-06 0.00014 22.6 0.4 1 23 612 634 612 634 0.98

11 12 0.00041 0.031 15.2 1.1 1 23 638 660 638 660 0.98

12 12 0.00062 0.046 14.6 0.1 1 23 668 691 668 691 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0076	0.57	11.2	1.7	1	20	6	26	6	28	0.92
2	12	0.15	11	7.1	0.3	1	12	202	213	202	222	0.86
3	12	0.00013	0.0095	16.8	2.5	1	23	381	403	381	403	0.99
4	12	0.0028	0.21	12.6	2.2	1	23	416	438	416	438	0.99
5	12	5.2	3.9e+02	2.3	1.5	1	10	463	472	463	484	0.72
6	12	2.3e-05	0.0017	19.2	0.5	3	23	492	512	490	512	0.96
7	12	0.0012	0.088	13.8	2.3	1	23	528	550	528	550	0.98
8	12	1.4e-06	0.0001	23.0	4.5	1	23	556	578	556	578	0.98
9	12	0.00038	0.029	15.3	5.4	1	23	584	606	584	606	0.97
10	12	1.9e-06	0.00014	22.6	0.4	1	23	612	634	612	634	0.98
11	12	0.00041	0.031	15.2	1.1	1	23	638	660	638	660	0.98
12	12	0.00062	0.046	14.6	0.1	1	23	668	691	668	691	0.96

Sequence Information

Coding Sequence: ATGGGAGACCCAAAATATACTTGCCCACTTTGTTGTAGTAAAACATTTAGCAATAAACAATCTTTACAGGATCACTTGACGGATACCTTACAAAATTTGTATTGTCCAATTTGTAAGAATAAATTGTTGTCTTTAGTGCACCTTGTTGAACACTTGAATCTTGTTGATTGCCAGCCAGACAATATAGGACAAACTATTGTTTTTGATACTGGTACCCAAGAAGTGAGCAATGAAAACACTACTGAAGTTGCAAATTCTGACGCTACTCAATTTGAACATTTAGCTCACTCTGATACAGACCAGTTCACAACCAATACTTTGGCAAATAATGAGATGTATGTGGAGTTCCTGAGTAAACCATTGTCGAAGCCATGCCTTCAGACTCAAGGACTCAAACTTGTGCGGGACTCCAGTGAACATAGAGAATCATACTTTGTTGTCACCCAAGATAATGCTGAATTAAACATAGGACACACTATTGTTACGAAACAGAATAAAGATGGTACTATATCATTGACTGCTGTCAAAGATATGAAAATAGAAGAAAGCGAGACACTGATATCTCAATCTGAGAATGAAGTAGAAGACAGTCAGGCTGAGATCTACAGCTGTAATACATGTGGTGTATCTTTTTCCTCTGTGCTTGACCATATACAGAACTACCATAATGACCAAGAAGTTGTTGTTGAGGAGCCACTAGAAGAAGGTGACAATGAAGCGTTACCTATAGAGAATGAGTCTCTTGACCATGATCATGATTCAATGGTGTCGAGCGAAAAACATACTCCGCGACGGGTCATTACCGATACGGGAGATATTGTGGAAGCACCTATGATTATTAAATCAATGTCAGAATCGGAAATTGAGACAATAGTTCCTATGGATCTTAAAGAGGATGAAGTAACAGATAATGAAGGACGCGTGTACACCAGGCGCTATGTGCAAATTGATAAGTTGTGTGACAGTGTCATAAAAGATATCAAAGAAAGTGATGATAAAGGTGGCCCATATCACAAAGTAGTGTTGAAGGAAGTCCTAACATCAAATGGAAGCAATGTCAAAATGTATCATTGTATGTCTTGCAATATTTATGTCAGTTCATTGAATGAGTTCAAATCGCATCCTTGTAAAACATTAAAATTTAAATGTCTTCATTGCCCAGTGGCATACGAAAATTCGAAATCCTTATGTGCTCATATGAAAGTTCATAAAACTAAAGCAGAGGGCAACACTAAGGTAGCAGTGTATGAATGTGAAGTTTGCTGCACAGTATTTCCATCAAATAAATCATTAAAACTACATAAACGGATGCATGATCCTATAAAGGCACGGCCCATCGAACCCCCATTAGTTAACAGATTTGGCAAAGAGCCAAGCGAAGGCAGATACTGCTGTCCAACATGCGATAAAATGATACCCATAGACTATAAAACGATACATCAGAACTCGCACAAAACCAGTGACAAGATGAACTGTCAAATATGCAACAAAAAGTTTAGCTCTGAAGAATATTTGGAAATGCATATGACTGTACATAATATAGATAAGGTAGCTGTGAACAAACAAGATAAATCACTTCCATACAACTGTTTATATTGCAACAGACGGTTTGCGCGGCCCCATGAAAAAGTCAAACACGAAAGAATACATACAGGCGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGTCTCACTCTGCACATGCGCACGCACACCGGCGCGCGGCCCTACGCCTGTCCACACTGCGGGAAGAGGTTCAAAGCGCATAGTGTGTTCAACCACCACCTACTTACGCACTCGGAAGTTCGCGCCTACAAATGTCCGTACTGCCCCAAGGCGTTCAAGACTTCAGTTCAACTGGCCGGACACAAGAACTCACACACAAAACCTTTCTCGTGCCAACATTGTAATAGGCCTTTCGCGTCGTTGTACGCGGTCCGCGTTCACACCGAAACGCACTCGCGACAGAATAATCTAAAGTTCTCGTGCTCGCTGTGCGGTGCAAGTTACGCCCGAGCGTTTGCGCTCAAAGACCACGTCAAGCAAATACACAAGCAAGACATAGAGTCTGTTGAGAATTTGGGTGGCCTCAAGGAAGAAGATTGGATAATCCGAGACAGCACCGATTTGCGCGTAAACCATTCTCTCAAACCTGCCCTTACCCAGGAGATAAACCAACCAGGATTGAGTTCAAATGAACTAATAGTTCCATAG
Protein Sequence: MGDPKYTCPLCCSKTFSNKQSLQDHLTDTLQNLYCPICKNKLLSLVHLVEHLNLVDCQPDNIGQTIVFDTGTQEVSNENTTEVANSDATQFEHLAHSDTDQFTTNTLANNEMYVEFLSKPLSKPCLQTQGLKLVRDSSEHRESYFVVTQDNAELNIGHTIVTKQNKDGTISLTAVKDMKIEESETLISQSENEVEDSQAEIYSCNTCGVSFSSVLDHIQNYHNDQEVVVEEPLEEGDNEALPIENESLDHDHDSMVSSEKHTPRRVITDTGDIVEAPMIIKSMSESEIETIVPMDLKEDEVTDNEGRVYTRRYVQIDKLCDSVIKDIKESDDKGGPYHKVVLKEVLTSNGSNVKMYHCMSCNIYVSSLNEFKSHPCKTLKFKCLHCPVAYENSKSLCAHMKVHKTKAEGNTKVAVYECEVCCTVFPSNKSLKLHKRMHDPIKARPIEPPLVNRFGKEPSEGRYCCPTCDKMIPIDYKTIHQNSHKTSDKMNCQICNKKFSSEEYLEMHMTVHNIDKVAVNKQDKSLPYNCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVFNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHSRQNNLKFSCSLCGASYARAFALKDHVKQIHKQDIESVENLGGLKEEDWIIRDSTDLRVNHSLKPALTQEINQPGLSSNELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01252072;
90% Identity: -
80% Identity: -