Basic Information

Insect: Thyatira batis
Gene Symbol: -
Assembly: GCA_905147785.1
Location: LR990495.1:9945099-9951795[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.9 1.4e+02 3.7 1.9 2 23 35 56 34 56 0.95

2 14 0.0065 0.49 11.4 3.1 1 23 94 117 94 117 0.92

3 14 3e-06 0.00022 21.9 1.7 1 23 119 141 119 141 0.98

4 14 7.3 5.5e+02 1.8 0.5 1 20 150 169 150 172 0.71

5 14 8.6e-05 0.0065 17.3 0.2 1 23 177 199 177 199 0.98

6 14 0.54 41 5.4 3.8 1 19 257 275 257 279 0.83

7 14 6.7e-05 0.005 17.7 0.1 1 23 285 308 285 308 0.92

8 14 0.012 0.93 10.6 1.8 1 23 317 340 317 340 0.96

9 14 0.0003 0.023 15.6 0.0 2 23 346 369 345 369 0.97

10 14 2.3 1.8e+02 3.4 1.9 2 23 376 397 375 397 0.92

11 14 0.00093 0.07 14.1 1.0 1 20 402 421 402 424 0.95

12 14 7.3e-05 0.0054 17.6 2.4 1 23 430 452 430 452 0.97

13 14 1.1e-05 0.00079 20.2 0.6 1 23 458 480 458 480 0.98

14 14 8.6e-06 0.00064 20.5 2.8 1 23 486 509 486 509 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.9	1.4e+02	3.7	1.9	2	23	35	56	34	56	0.95
2	14	0.0065	0.49	11.4	3.1	1	23	94	117	94	117	0.92
3	14	3e-06	0.00022	21.9	1.7	1	23	119	141	119	141	0.98
4	14	7.3	5.5e+02	1.8	0.5	1	20	150	169	150	172	0.71
5	14	8.6e-05	0.0065	17.3	0.2	1	23	177	199	177	199	0.98
6	14	0.54	41	5.4	3.8	1	19	257	275	257	279	0.83
7	14	6.7e-05	0.005	17.7	0.1	1	23	285	308	285	308	0.92
8	14	0.012	0.93	10.6	1.8	1	23	317	340	317	340	0.96
9	14	0.0003	0.023	15.6	0.0	2	23	346	369	345	369	0.97
10	14	2.3	1.8e+02	3.4	1.9	2	23	376	397	375	397	0.92
11	14	0.00093	0.07	14.1	1.0	1	20	402	421	402	424	0.95
12	14	7.3e-05	0.0054	17.6	2.4	1	23	430	452	430	452	0.97
13	14	1.1e-05	0.00079	20.2	0.6	1	23	458	480	458	480	0.98
14	14	8.6e-06	0.00064	20.5	2.8	1	23	486	509	486	509	0.98

Sequence Information

Coding Sequence: ATGGCTTCTCCCTCCCTCATGGACCCCGTCGGAGCGCCCCGCCCGGACCTGAAAAAAGGCTCGGGTCCGAAACGTACCACTATAGAATTGATTGGTGGTATATATTGCCACATTTGCCGTTCAATATTTGGAAATAAGAAAGTATTTGACAGTCATTACTTGAAACACAACACGGGCGATGGCAAAATCATTTACGCATGTGTTGCATGCCATAAGGAGATAGAGGGGTACCCCAGTTTCCGTGGGCACTGCTACCTCAATCACGTTACTAAAGATAAATTCAAATGTGTACACTGTGATAAGACCTATTCAAAATGTTCAATACTACAAAGCCATATTGATGCCGTACATACATACAGATGCAGCCAATGCAAGAAACAATTCTCATCAAAAACTGAATTACAAGTACATCTGATGATTCACAAGAATGAAAAGAACTCACCGCCATACGAATGTAACCTGTGCTCCAAGAATATTGATAGCATGGATATGTGTGAGCTGCATATAGAGGAGCACTGCAACATCACATATCCGTGCCCCATCTGCACCATGTCATTCACAAACAAAAACGATGCAACGTCACATCTCTCCATACACTTTGACAGAGCACTAACTGACTACGACTTCATAGAGCCCAAGATAGTGAAAGAAGACAGCTCCATTGACATACTAGGAGGCATACTGTGCTGCTACTGCGACAACTTGTTCAAGAACCGTCAGGAATTTGATGCCCATTTCCCTGCAGAACACTTTGGCAAAGATATTGTGTACACATGCAATATATGCGGGAAGGAATACGAAAAATATTTATTGTTTAGCAACCATTGTTACTATCACATTTCTAAAGATCGATTTGAATGCGACGAATGCGACAAGGCATTCCCCCGTCTCTCCCTGCTAGTGATGCACACGGAGGCGTTCCACTCGGGCAGCCCGGCCGACAAGCCCTTCGCGTGCGCGCACTGCCGCCACGGCTTCAAGACTGTCGCCCGCCTCCGGGAGCATCTGCGGATAGTGCACGAGCTGCACTCCATCAAGTGTCCCCAGGCTGGCTGCGAGATGACATTCGAATCACCTAGAGATCTGATCATTCATCAGAGGAATCACAAAATTGTGGACAACATCTCGTGTCGTCACTGCAGCCTGCCGTTCACCACGCTATTAGCATGCGAGAGACATCTCGACGTACACAGAAAATCAATATACATATGCCCCATCTGTAACAAAGAGTATAGAGAAAAGTTCACCTTACTAAAGCATATACCGCATCATTTCGAATCGGTGCTCCACATCTGCAAGATTTGCGGCAAAGCATACAACAGAAGATCTCGTCTCGTCCAACATTCCAAGACACATTCGGACCTAAGGAACTTCGTGTGCAGCCTCTGCGGCAAAGGTTTCATGAAGCCCCACGAACTCCAGCAGCATTTGAACGTTCACACGGGCCTAAAGCCGTACAAGTGCACGCATTGCCCTAAGACATTCGCCAGCTACCCAAACTGGTCTAAACATCTACGCCGGATGCACAACATTGACCAGAAAACGATTAAAACACTGCAAAATCAAGATCTTAATACAGAAAGCGTGAACATTTCTATAGATAATGAAAAAATGGTTGCAAACCCAATATTGGTGGATGATAAAAATGAATATTTAACAGTTTTGAGGGATAATTTGCTGGATGACAACGTTGTTAGTGATGTGGCGTCGATCATCGAGTCTGGGTTCGAGTCGATGAGCTCGGACATGTCGCTGGGCCGCGGCTCGAGTCAGGACGACAGCACGATGGACGGCATAGACCCGGCCGTCATACAGAAGGAGTGGCAGATGTTGAACGAAAGCATTAACAATGCACCCAACAATATTCTCGAATTGCCGAATTTGATGCCGATTCTGAATACGTTTGGCCCACATGACATGCAACAAACAACAGGCATGGATACAACCCCGAGCTGCCAGCCGCCGGGCAGCTTCCCGCCGGAGTACGGGCCGGACTTCATCACCCGGAGCGCCTTCGACGGAGGCCTCATCGACCTCGACGACCACCTCCTCCCCCACATTGATCCCCTCCTCACGATCAAAAACGAACAACCCACGAAAATGTACGTAAATACCTTGCATAATGTTGATTTCGAAAATTACGACAATGTCCCCGCATACGGAGCGCAGACCGCCTGGGAGCCCCTCATTACGAAGGTCTACCAGAACTACACGTACCACGAGGAATTAGCTGATGTTAATAGATTATCCATTATGAATACAGATATTTTTTAG
Protein Sequence: MASPSLMDPVGAPRPDLKKGSGPKRTTIELIGGIYCHICRSIFGNKKVFDSHYLKHNTGDGKIIYACVACHKEIEGYPSFRGHCYLNHVTKDKFKCVHCDKTYSKCSILQSHIDAVHTYRCSQCKKQFSSKTELQVHLMIHKNEKNSPPYECNLCSKNIDSMDMCELHIEEHCNITYPCPICTMSFTNKNDATSHLSIHFDRALTDYDFIEPKIVKEDSSIDILGGILCCYCDNLFKNRQEFDAHFPAEHFGKDIVYTCNICGKEYEKYLLFSNHCYYHISKDRFECDECDKAFPRLSLLVMHTEAFHSGSPADKPFACAHCRHGFKTVARLREHLRIVHELHSIKCPQAGCEMTFESPRDLIIHQRNHKIVDNISCRHCSLPFTTLLACERHLDVHRKSIYICPICNKEYREKFTLLKHIPHHFESVLHICKICGKAYNRRSRLVQHSKTHSDLRNFVCSLCGKGFMKPHELQQHLNVHTGLKPYKCTHCPKTFASYPNWSKHLRRMHNIDQKTIKTLQNQDLNTESVNISIDNEKMVANPILVDDKNEYLTVLRDNLLDDNVVSDVASIIESGFESMSSDMSLGRGSSQDDSTMDGIDPAVIQKEWQMLNESINNAPNNILELPNLMPILNTFGPHDMQQTTGMDTTPSCQPPGSFPPEYGPDFITRSAFDGGLIDLDDHLLPHIDPLLTIKNEQPTKMYVNTLHNVDFENYDNVPAYGAQTAWEPLITKVYQNYTYHEELADVNRLSIMNTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -