Tbat009475.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990512.1:4384143-4413854[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5 1.1e+02 4.0 0.0 2 23 481 502 480 502 0.88 2 17 0.014 1.1 10.4 0.1 1 23 512 535 512 535 0.95 3 17 0.041 3.1 8.9 3.8 2 23 724 745 723 745 0.95 4 17 0.92 69 4.7 3.0 1 23 756 780 756 780 0.93 5 17 0.0025 0.19 12.7 0.3 2 23 787 810 786 810 0.97 6 17 0.081 6.1 8.0 0.2 1 23 816 838 816 838 0.93 7 17 0.0073 0.55 11.3 5.3 1 23 844 866 844 867 0.96 8 17 0.042 3.1 8.9 0.0 2 19 877 894 876 897 0.90 9 17 0.077 5.7 8.1 0.3 1 23 991 1013 991 1013 0.97 10 17 3 2.2e+02 3.1 6.2 1 23 1020 1042 1020 1042 0.95 11 17 0.0016 0.12 13.3 1.8 1 23 1102 1125 1102 1125 0.95 12 17 0.0011 0.079 13.9 0.8 1 23 1132 1155 1132 1155 0.98 13 17 0.0045 0.34 11.9 0.2 2 23 1177 1199 1176 1199 0.96 14 17 0.00066 0.049 14.6 2.5 2 23 1219 1241 1218 1241 0.95 15 17 4.5e-05 0.0034 18.2 1.0 1 23 1280 1302 1280 1302 0.97 16 17 7.4e-05 0.0056 17.5 0.1 1 23 1308 1330 1308 1330 0.98 17 17 0.00066 0.049 14.6 0.6 3 23 1338 1359 1336 1359 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAGCCCCAGCCTCCGCTCATACTCTGCATGGATAATATGTCCGGAGAGGAAGTGTCCCTGCGAATTGAACCTCATGATGATTTCCAGACGTTCCTGGATAAGGCCAAGTTACTCCTAGGCTTTGATGTCGACATAAACTCCATAACAAGAAACCAACAAGTATCTCTAAGCGATAATATATACCAGTTTCTCATTACTGCCGAAAATACAGCTGAGGGAACATTGGCCACCCAAAGTATTGACGAAATGTTGGCCCCAAATGATGGCTCCAACGATTTGGTATACATTTTGGACGACGGCACTCAAATAAGGGCATCACAAATACACTTTGATAATGAAGACCCCCCCGTAGATCTAACAGCTGAAAAGATCCCCTTTGTCAAGTACACGGATGATTGTATCGATGATTTAGATATAGAAAACCTAAATATAGAAGAAACTAAAAACTATAACATCATAGAAAGTCCAGTGTCGAGATGGTCCAGTAAAAACTCGAGTCCAAAATCCAGTTTTATCAACAGTCTTCCTTTCAAACTAGTCTGCAATAACACTTCGGCTTTCGAAGCTCAATTCACCAAATTCCTCGAAGCTAACACAGCGAAAACGTATGCGACTTTAAACCCTGTCGCTAATAGGAATAAGTCTCCACGTAGTTTGATTAAAGAGAACTTCAAGAAATTTGATGAAAGCTACAGAGATGATTTGACTTACACTCGAGAGGAGGTCCTGAATATGTTCAAAGACTCACCGGTCGCGTCCCTACCTTATGAGAACCATGAGAGAAGGCATGTAAGAAAAACTGATCCCTCTCGGATAGTACATAAGAGTTGGAATTCTAAGCCGACGTACGTCGACATAGGTGGCGTCCTATACGGCGGGAGCGAAAGCCAAATATGCTTCATTTGCGGCAAAAATGTAGATAAAAACGCTGATAAACTCTACCTATTTGACAATGAAGACCAAAAGATACACAGGTGTTCTCCGCAGAAGAAAATGTTGACGCAACTAAAGATTATATGCGAGGGGTGTTTAAACGAAAACTTTATGCCCTGCAGACTAAAAGGCGCAAACCAATTTCTAAATCCTGACGAATATTTGGTCATACGCAATAATCAGCAGTACATCTTTCAAAAGACTAAGAACTTCAAATATTGTGGGGCAGTGATTGAGAAAGAGATCATAGATAAAGATGAACTGGTGAAAGTTGAGATTGGGTCTGACGGGGAGATTGTTACTAAGCCCATAGACAATGACTCTAGGTCTGAAGACGTCATTATAGTCAAAGATGAGATGAGGGACAGCTCTAGTGATGTGGAGATAGTCGAGCCTGAATCTGAGATCGATCTTATAGTCGATAACTTGGACGATGCTGATGAGGATGTTAAGAGGTTCCTCGGGAAGTACTCCTGCGATGTTGAGGATTTGAAGGAGTTGAAGTGCAGATTCTGCGAAAAAGTATTCGCGGCTCTACCCGAAGTGATAGAACACGGTGAAACGCACAAGCACAATATGGAAGACGGGGAAGTGTTCCCCTGTCCACTATGTAACTATGGCTACGCCAACTTCAAATGGCTGAAGGGACATCTCAAAGCTGCTCATGATAAGGTCGAGAAGAAACCGGAAGATAAAGAAGAATCTAAAGATGAGATCAAAATAGATGTAGAAGAAATATCTGCAGTACAGTCGTCGCCTATAGCAAAAAGAACTAGAAGTTCTATCAAGAAGTCTGAGGGAGACAAGAGTGATAGTCCCGAGAAGAAGGTAGACGATGAGAAGGCAAAAGAATGCAATACTGAATCGACTGAACACATAATCAAAACGGAGGTGAAACAAGAATGTCTCGACTCCAGTGATGATGAGATATGGATTGTGCAGACAGCTGATGATGAAGCGTCACGGCAGTTGCAGATATTACTTGATGCTGCTAAGGGCAAAGGCAAAGAAAATGATGAAACAACGAACACCCAAAAATGTTTGAATTGCAGCCAAGTTCTAGAAGTGACTGAAATAGCATCAGCACACAAATGTGTCAGGAAACGTGGGAGAAAGAGAAAGAATGCTTCTAAAGATGATAACTTTTTGTGTATACCAACCAGGGAAGATTTCTTTAAGAGATGTCGTAAAAAGAGAAGTAAGGAAGCGAGCACAGATCCACAAATAGTGACATGTCACAATTGCAATGAATCATTCACTTCTAAAGTGAGACTTAAATTTCACATGCAATTCCACGAGCCCTCGACTATGTTGTCAGACGGACAATACTCTTGTCACGATTGCAAGAACGCTACATTCGCAACGGAAACTGAACTGTTCGATCACATACACTTCCAGCACGGTAAGCAGAAGAGGTGGCAGTGTCCAGTGGATGGGTGTGCGAAGACGTTTTATTTGAGGGCAACACTGACGAAGCACAGCCGCACGCACACAGACACGCGGCGCTACGTGTGCGTGACGTGCGGCAAGCGGTTCCTCGACAAGCAGACCCTGGACGAACACGGAGTCACTCATCTACAGATAAAGCCGTTCCAATGCCACATCTGCCTGAAGCAGCTGACTCGGCGGTCCCGCCTCCGCATGCACCTGCGAGCTCACCACGAAGAGTTGTCTCCGCGGCTGGTGCTGGTGTGTGCGGTGTGCGGAAGGGCATTCAGGGATCAGGGGGAGGCACAGGACCACGCAACAAAATCTACGGAATGCATAGAAGCTTTTGCCAGCGAGCTGAAGGAGGAAGCTGAGGAGGTGACGGTCCAGCTGTCGCCCACTAGTGGGCTAGTCAGGCACACAGTACAGATTGTGGGTTCCTGGGCAATCAGGGCGTTGAGGAGATGTGTGGTGTATACAGATTCACCCAAGTTGTCCCAGCCTCTTCGAAGGCAGGTGTCTGCGGCGGCGGGCGCAGGCCTGCTGGCTGGACTGCCAGATGAGTGCCGACCCCTCCTCCGGGTCGTGGAAATCGAGAAGGCGTTCAGATGCGAATATTGTGAGGATGTTTTCTATTTGGAAGATGGATTGAACAACCACCGTACTATACATAAGGGTGTTAAAAATCCATTTATATGCCACATATGTAAAGTCAGCTTTGCTACATACTCCAGATGCACAACACACAAGACTACCCACGGTTTCTACAAAAGGCCTCTTGCTGAAGCTAAGAGGTCTGCGGCGGCTGCGGCTGGGGGACCAGGGGTGGGGGGCGTAGGGGGCCTCGGGGGGACAATGACCCCTGGAGCAGGGGGCGTAGGAGGCGACTCCCTCACGCCTATACTCGGCTATGGGGACTTTCCTGTCGTCAAGCATTTCTTGTGCGAGGATTGCGGACGGTCGTACCTCCACTGGACTTACTTGCAAGTACACAGACGTATGAAGCATGCAAATGAAAACTTTTTGTACAAGTGCAATCAGTGTGACCTGACCTTTCCTAATAGTTGGAGCGTGGCGTATCATAGGAAGAAATTGCACGGTAAACCGGGCCAGGAAGTTACAAATCACACCACTAAAATTGCCAGGGAAGATTATAGGATCCCATGCAGAGATTGTGATGAAGTTTTGCCAAACAAAACTGCACTCTACAAGCATAGGAAGAAGGAGCACAGCGATATAACTCTGCGCTTCAATAGCAAACCAAATGAGTCCTCTCATGGGACTGTCAGCTGTGGCCACTGTGGACTGAGCTTTCCCAATGCACACGACTTGCATACACATCTCAAGCAAGTGCACGCTCACACGGCGGCGCATCCGTGCGAGGTGTGCGCTGCTCATGCTCAGGCTCGTGGGGCGGGGGTTGGGGTTGGGTCGGGGGTCGGGGCGGGGGTCGGGCGGGGACGGGGGCCGCATGCATGCCCCGTCTGTTCGCGCACGTTCCGCACAGCGTCGATGCGCGCAGACCACATGCGCACGCACACGGACGAGAGGCCCTACCCGTGTGATGTGTGCGGACTGGCTTTTAGACGGTCGACCGCTATGCGCAACCACCGGCTAATCCACACGGGGGTCCGCGCGTGGGCGTGCGCGCGCTGCCCCAAGCGGTTCCGCATCCGCTCCGACCTGCGCACGCATTTGAGGCTCAAGCACCCCGCGCACCTCGCTATTATTGAGGTTGAAGGTTTGCACATAACAACTGAAGATGTAATGAGGTATTTGACCATGAATAATATACAACAGGACAAGGTGATTGAAATATCCAAGATATCATTCTCTAAGGGCACTTCGAGTATAATACCGAACAGTGCTCGCGCCCTGTCTATGCTGAGTAACATAACCCGCACACAAATTGCCTTCAATACACCCCCGCCGCTTCGAAATGACGAGTTCCAGCCGGTCCGTCGTGGCAGGGGAATCGCGAAGAACCCCCGCCGACCCAAGATCCTGCAGCGCGGGGGTGACGACGTTCCCCCGCCGGACCCCATCCACTACCCTATGGCTGTCAGCGTTCACGGCGAGGGAGCAACTATAGAGGCAGTGAAAGGGACAAAGCGCAATGCACTTCTCGTCGAAGGGCCAAACAGGCATCACTCCTGCACACCCCCACGACGCTACTCCACCCCTGGTCCCCACTGCCGCTACAGCGTCTCCTCATGGAGCTCTGGCTACCTTACTCACCGCAGGAACACAACACTACATGTAGTGTTATTTGGCTGCGGTCTTCTGTAA
- Protein Sequence
- MEEPQPPLILCMDNMSGEEVSLRIEPHDDFQTFLDKAKLLLGFDVDINSITRNQQVSLSDNIYQFLITAENTAEGTLATQSIDEMLAPNDGSNDLVYILDDGTQIRASQIHFDNEDPPVDLTAEKIPFVKYTDDCIDDLDIENLNIEETKNYNIIESPVSRWSSKNSSPKSSFINSLPFKLVCNNTSAFEAQFTKFLEANTAKTYATLNPVANRNKSPRSLIKENFKKFDESYRDDLTYTREEVLNMFKDSPVASLPYENHERRHVRKTDPSRIVHKSWNSKPTYVDIGGVLYGGSESQICFICGKNVDKNADKLYLFDNEDQKIHRCSPQKKMLTQLKIICEGCLNENFMPCRLKGANQFLNPDEYLVIRNNQQYIFQKTKNFKYCGAVIEKEIIDKDELVKVEIGSDGEIVTKPIDNDSRSEDVIIVKDEMRDSSSDVEIVEPESEIDLIVDNLDDADEDVKRFLGKYSCDVEDLKELKCRFCEKVFAALPEVIEHGETHKHNMEDGEVFPCPLCNYGYANFKWLKGHLKAAHDKVEKKPEDKEESKDEIKIDVEEISAVQSSPIAKRTRSSIKKSEGDKSDSPEKKVDDEKAKECNTESTEHIIKTEVKQECLDSSDDEIWIVQTADDEASRQLQILLDAAKGKGKENDETTNTQKCLNCSQVLEVTEIASAHKCVRKRGRKRKNASKDDNFLCIPTREDFFKRCRKKRSKEASTDPQIVTCHNCNESFTSKVRLKFHMQFHEPSTMLSDGQYSCHDCKNATFATETELFDHIHFQHGKQKRWQCPVDGCAKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHHEELSPRLVLVCAVCGRAFRDQGEAQDHATKSTECIEAFASELKEEAEEVTVQLSPTSGLVRHTVQIVGSWAIRALRRCVVYTDSPKLSQPLRRQVSAAAGAGLLAGLPDECRPLLRVVEIEKAFRCEYCEDVFYLEDGLNNHRTIHKGVKNPFICHICKVSFATYSRCTTHKTTHGFYKRPLAEAKRSAAAAAGGPGVGGVGGLGGTMTPGAGGVGGDSLTPILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCDLTFPNSWSVAYHRKKLHGKPGQEVTNHTTKIAREDYRIPCRDCDEVLPNKTALYKHRKKEHSDITLRFNSKPNESSHGTVSCGHCGLSFPNAHDLHTHLKQVHAHTAAHPCEVCAAHAQARGAGVGVGSGVGAGVGRGRGPHACPVCSRTFRTASMRADHMRTHTDERPYPCDVCGLAFRRSTAMRNHRLIHTGVRAWACARCPKRFRIRSDLRTHLRLKHPAHLAIIEVEGLHITTEDVMRYLTMNNIQQDKVIEISKISFSKGTSSIIPNSARALSMLSNITRTQIAFNTPPPLRNDEFQPVRRGRGIAKNPRRPKILQRGGDDVPPPDPIHYPMAVSVHGEGATIEAVKGTKRNALLVEGPNRHHSCTPPRRYSTPGPHCRYSVSSWSSGYLTHRRNTTLHVVLFGCGLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -