Tbat019757.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990515.1:1406380-1417127[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 0.24 12.4 1.1 1 23 232 254 232 254 0.98 2 12 0.0069 0.52 11.3 0.2 1 21 261 281 261 284 0.89 3 12 4 3e+02 2.7 2.6 1 23 288 310 288 310 0.95 4 12 0.00027 0.021 15.8 2.7 1 23 315 338 315 338 0.98 5 12 0.00084 0.063 14.2 2.3 1 23 342 365 342 365 0.94 6 12 1 75 4.5 0.0 3 20 383 400 382 402 0.90 7 12 0.0012 0.09 13.7 0.1 2 23 414 435 414 435 0.98 8 12 8.9e-05 0.0067 17.3 0.1 3 23 459 480 457 480 0.95 9 12 4.2e-06 0.00031 21.5 1.8 2 23 490 511 489 511 0.97 10 12 1.2e-06 8.8e-05 23.2 2.2 1 23 517 539 517 539 0.99 11 12 7.2e-07 5.4e-05 23.9 1.7 1 23 545 567 545 567 0.97 12 12 5.2e-07 3.9e-05 24.3 1.7 1 23 573 596 573 596 0.98
Sequence Information
- Coding Sequence
- ATGTCTGTATTTTCCGTGTGTAAAATTTGTCTAGCAGACAACGTTCGTATGATAATAGTGCAAAATACTACTATACTTGATGTATACGAAGAAATATGTCACGTTTCGTCACAAACTAAAGAAGATAGATCCATGCTAGCATGTTATATATGCCATAAACAACTTATGAATTGTCTAAGTTTTATGAGAAAAGCACAACAAACAAATATAATTCTTGAGCAAATTTTAAAGGAGGATAAGCAAATTGAATCAGTATCTCATATAGACAGACAAGCATATAAACTGATAGCAAATCTCAGTGTATCACCTATACAACATCTGGTGTCCTTGGAACCACAGTTTTCAGATGTGGATGAAAAAACTGATGCTACCCTCAATATACATAGAAATGATCTCAAATTGAAAGAGGAGTGTGAAGAAAAACCAGAAATAATTGAACCCCAATCAGATTTAGACAATCATGATAACAGCGAGTCAGACGACGATGTGCCATTAAAGAGTATAAGTATAAAGAAGAAACTACAAAGCAGAGTTAAGTTGAGAGAAAGAGTCAAAGTGAGAAAGAAGGAGACAGAGAAAAAACCTCATGTTAAAGCATTCAAAATAGACGCATTAAGGATACAACTAACTCAAGAACAGCAAATGCAGCAATTACAACAGCGGGCCCAATCAATAAATTTCCTAAACTCTCCATATAAATGTGAGCTGTGCTTCAAAGGGTTTGTGGATACACGAGCTTATGAGAATCATAAGGAGAAACATGATGAGCGTAGAGGCACTTTCGAATGCGGTGTATGTCGCATGAGGTACAGTAGCGCGCGACAGTTACGCTCGCACAACTCGGCCGCACACGCCACACACTACAAGTGCAACTCGTGCCAACATGTCTCCCACACCGCAAATCAGGCGAGGGAACATGAAAATTGGCACAACGGATTTACTTACGAGTGCCAACTGTGTAGTCAAAAGTTTAGGAAATCGACGTCCTATCTCACCCACATGCGGATACGCCACCCCACGGAGCATGTGTGCAACGTGTGCGGGAAGAGCTTCGTTGGAAGACACGGCCTCCTCATGCACAAGACTAAAAGTCATAAGAGAGAAGAGTTTAGTGAGAACCCGGACGAGCCAGCCACAGAGCGTTTCTGCGAGGAGTGCAACATACAGTTTGTGAGCGTCGAGGCGTGGAAGATACACTTCATCACCAGCTCTGTTAAACATAGTAATAATAGCAGTCCACAATGTCGCATATGCAGCATCAGTCTACCAAGTGAGGAAGATTTAACCGCACATATGAGGGAACACGAGAAGACATTCCGCCGACCCATACCGCGACCCACTAGAGTCAACCCTGGGAAGTTGGTCCAGCTGGCCTGTGACCAATGTGGTGCAAACTTCATAAATAGGTCAAAGTTACAAGCGCACGTGAAGAGAGTGCATCTCGGCTTGAAATATAATAAGAATATTGTATGCGAAGTATGTGGGAAGAAATGTACGTCGAATGCATCACTAAAGTACCACCAACGAACACACACTGGCGAGAGACCGTACACGTGTACCACGTGCAACAAACGTTTCTCAGACAACAATCAGCTGCGTATCCACGGGCGGACGCACTCGGGCGAGAGGCCTTACTGCTGCGCCGTGTGCGGGAAAAGGTTCAGTCAGAAACCAGCTTTAAATAGGCATTATAGGGTCCACACAGGAGCAAAGCCCTACGAATGTCAGTACTGCTCTAAGACATTCAGTCAATCTAATTCCCTGAAACTTCATGTCAGGACTGTTCATTTGAAACTACCCCCAAACAAGAGGAATAAGTCTCAAAATCCTGTGCAAAATGTAACTGTAGCTGAAAAACTACAGGACGATATTAATCAAACATTAGAATGA
- Protein Sequence
- MSVFSVCKICLADNVRMIIVQNTTILDVYEEICHVSSQTKEDRSMLACYICHKQLMNCLSFMRKAQQTNIILEQILKEDKQIESVSHIDRQAYKLIANLSVSPIQHLVSLEPQFSDVDEKTDATLNIHRNDLKLKEECEEKPEIIEPQSDLDNHDNSESDDDVPLKSISIKKKLQSRVKLRERVKVRKKETEKKPHVKAFKIDALRIQLTQEQQMQQLQQRAQSINFLNSPYKCELCFKGFVDTRAYENHKEKHDERRGTFECGVCRMRYSSARQLRSHNSAAHATHYKCNSCQHVSHTANQAREHENWHNGFTYECQLCSQKFRKSTSYLTHMRIRHPTEHVCNVCGKSFVGRHGLLMHKTKSHKREEFSENPDEPATERFCEECNIQFVSVEAWKIHFITSSVKHSNNSSPQCRICSISLPSEEDLTAHMREHEKTFRRPIPRPTRVNPGKLVQLACDQCGANFINRSKLQAHVKRVHLGLKYNKNIVCEVCGKKCTSNASLKYHQRTHTGERPYTCTTCNKRFSDNNQLRIHGRTHSGERPYCCAVCGKRFSQKPALNRHYRVHTGAKPYECQYCSKTFSQSNSLKLHVRTVHLKLPPNKRNKSQNPVQNVTVAEKLQDDINQTLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -