Tbat023518.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990485.1:10093829-10102867[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.036 2.7 9.1 2.7 1 22 155 176 155 176 0.95 2 13 0.0022 0.17 12.9 0.3 2 20 190 208 189 212 0.95 3 13 3.9e-05 0.0029 18.4 1.5 1 23 251 273 251 273 0.97 4 13 8.1 6.1e+02 1.7 4.2 2 21 280 299 279 300 0.89 5 13 0.11 8 7.6 0.1 2 20 379 397 378 399 0.89 6 13 0.00018 0.013 16.4 2.1 1 23 407 430 407 430 0.97 7 13 1.2e-05 0.00088 20.1 3.0 1 23 451 473 451 473 0.99 8 13 5.2e-06 0.00039 21.2 3.0 1 23 480 502 480 502 0.98 9 13 2.4e-07 1.8e-05 25.4 2.9 3 23 516 536 514 536 0.97 10 13 7.4e-05 0.0055 17.5 3.6 1 23 542 564 542 564 0.99 11 13 1e-05 0.00077 20.3 3.3 2 23 571 592 570 592 0.96 12 13 4.2e-08 3.1e-06 27.8 1.5 1 23 598 620 598 620 0.99 13 13 0.0035 0.26 12.3 0.1 1 23 626 648 626 648 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCCTTGAAAAACACTGAAGTAAAATGCGAAGAAATATGCCGCACATGTCTTTCAAAAGAAAATGAACTACATTCATTGTATGATATAGCCGTTGGAGCGATTTCACTAGATTGTATTGTTTTTGAAATAACCGGAATTAAGATACGCAGAAGTGATGGACTGCCACTGACAATATGCAGTGTCTGCAAAGAAATAGCTAAAAAGGCTTATGATTTTAAAAAACAAACACATGAAGCCCATGCATTATTGAAGGGTCTTTTAAAAAAAGAAAAAAAGAATGAAAGTGTGGAGATAAAGGCAGATAATATGGGGGTTAAGACTGAAAATGTACCTCATGAAAATGATAATGATAATGATGATTATACAGATGATCATTTTAGTCTATCATTATCTAATGCACAAGAAGAATTAACTTTGGAGGCAGTTAAAAATGAATCAGTGAATAATGTGTCTGACCATGAATGTAAGAATTGTTTCTTAGTGTTTGAGTCTCACAATCAATTAAATGACCACAAGAAAACTAAGTGTATAAAAGTGGAATTTGAGGAGCCCAATGCCTCCTATTGTCCAATGTGTGGCATATGCTACGAAGGTGCAGAAAACTTATCTAAACACATGTGGGAGTATCATTCTGAGATAATGGGACCAAAAAAAAGAGGACGACCTAAAAAAGTTCTTACTACAACAATTTTAAACAAGCTATCCGAGAATGGATTTTATATAACATCAATTGGTTCTAAAAACTATGAATGCACTTTTTGTCAGAAACAATTTAAAACCAAAGATGACTTTATTATACACTTAATGGACCATAAAGATATGAATGTTCTGTGTTGTAATATATGTAAGAAAATGTATTTAAAGAAAAAGAGCTTTGATCAGCATATTTGCATTGAAGTTATAAGTAGCGGAAATAAACTACTGATTGAGGGATCAACAGAAATTCCTCGTAACGCAATTATGGAAAAACGTTCACCGAATGTATTAATATTACAGGATCTAATGAATCCTAATTATGATATGGGTAACATTAGCTTACCTCATCTGTGCAGTGCATGTGGTAGATTATTCCTTTCCGAAGGAGATCTTATAAGTCATCATGATGCAGAGCACCCGGAACTTTCATTAAGATGCAGTCTTTGTACCAAGGTGTTTGCATCTGTAAAAACAGCCGCCCGTCATAGGACTGTATGTAAAGAGGTAGAGAGAAAGCATAAATGCAAAACTTGTGGCCTTAGATTCGCATACGAAATATCGCTCAATAAACATATACTGCGATACCATGAGGGACAGAGTGTTTCTGTGAAGTTCATCGACCCGAAAACGAGATTAGACGAAAGACAGTTCCAGTGCGATACTTGCAACAGAAGCTTTTATAAAAAGGAGTTACTTGTGAGACATACTAAAACTCATATGCCAAATGAAAAGTATTATGAATGTGATGTATGTGAAAAGAAATTTCATAGAAGTGATAATTTAAGGTCTCACAAGCGGATCCATGATATGAATCGCACCAAAGCCAATCCCAAGAACTGTCTGTGTTCATTTTGCGGCCGCAGTTTTTCAAATTCATCCAATTTGATTGTGCACATGCGTAGACATACCGGAGAAAAGCCATATAAATGTGATTTTTGCGACAAAGGTTTTCCAAGGTCATCTGATCTTCAGTGTCATAGACGATCGCATACTGGAGAAAAACCTTGCATTTGTAGCATTTGCAGAAAAGGTTTCTCTCGTAGCAACAAATTGTCTCGTCACATGCGAGTGCACACTGGCCAGCGCCCCTACAAGTGCACTTACTGCGACAAAGCGTTCTCCCAGAGCAACGACCTCACTCTGCACATCCGCCGCCACACAGGCGACCGTCCATACATCTGCGAAGTATGCGGCGATAGATTTATTCAGGGTACGGCGTTGCAAAATCATAGGCGAGCTCACGGCCATTTTCCGACTTCGTCGCCCGGTACCGCCCTTGTAGTGCAACAGGGGTCAGTGTTGCAAAATCACAGACGGACGCAAGGCCATTTTCCGACTACGACGCCCGGACCACTTGCAGTGCAACCGGTTACTTACGCAGTCCAAAATACCATCTGA
- Protein Sequence
- MASLKNTEVKCEEICRTCLSKENELHSLYDIAVGAISLDCIVFEITGIKIRRSDGLPLTICSVCKEIAKKAYDFKKQTHEAHALLKGLLKKEKKNESVEIKADNMGVKTENVPHENDNDNDDYTDDHFSLSLSNAQEELTLEAVKNESVNNVSDHECKNCFLVFESHNQLNDHKKTKCIKVEFEEPNASYCPMCGICYEGAENLSKHMWEYHSEIMGPKKRGRPKKVLTTTILNKLSENGFYITSIGSKNYECTFCQKQFKTKDDFIIHLMDHKDMNVLCCNICKKMYLKKKSFDQHICIEVISSGNKLLIEGSTEIPRNAIMEKRSPNVLILQDLMNPNYDMGNISLPHLCSACGRLFLSEGDLISHHDAEHPELSLRCSLCTKVFASVKTAARHRTVCKEVERKHKCKTCGLRFAYEISLNKHILRYHEGQSVSVKFIDPKTRLDERQFQCDTCNRSFYKKELLVRHTKTHMPNEKYYECDVCEKKFHRSDNLRSHKRIHDMNRTKANPKNCLCSFCGRSFSNSSNLIVHMRRHTGEKPYKCDFCDKGFPRSSDLQCHRRSHTGEKPCICSICRKGFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFPTSSPGTALVVQQGSVLQNHRRTQGHFPTTTPGPLAVQPVTYAVQNTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -