Tbat021750.1
Basic Information
- Insect
- Thyatira batis
- Gene Symbol
- -
- Assembly
- GCA_905147785.1
- Location
- LR990506.1:6397570-6411544[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6e-05 0.0027 18.5 6.9 1 23 188 210 188 210 0.98 2 12 2e-06 0.00015 22.5 0.2 3 23 224 244 223 244 0.98 3 12 4.3e-05 0.0032 18.3 2.1 2 23 253 274 253 274 0.98 4 12 7.7e-05 0.0058 17.5 2.1 1 23 280 302 280 302 0.98 5 12 1.6e-05 0.0012 19.6 0.8 1 23 308 330 308 330 0.97 6 12 1.4e-05 0.0011 19.8 8.4 2 23 337 358 336 358 0.97 7 12 1.4e-05 0.001 19.8 0.7 1 23 364 386 364 386 0.98 8 12 6.5e-06 0.00049 20.9 1.2 1 23 392 414 392 414 0.99 9 12 0.00023 0.017 16.0 0.9 1 23 420 442 420 442 0.98 10 12 0.002 0.15 13.1 0.8 1 23 448 470 448 470 0.96 11 12 0.00052 0.039 14.9 3.6 1 23 495 517 495 517 0.97 12 12 0.0011 0.08 13.9 3.0 1 23 588 610 588 610 0.99
Sequence Information
- Coding Sequence
- ATGGCTACTGCCAATAAAATGCAGAATCTAAATTTTGATAAAATTTGTCGCGCCTGTCTGCAAATAAAAAAGGATATGAGACCATTGTTTGAACAACTCACTGCGACGATGCTGATGGGGATATCAAAAGTGCAGGTGGAGATAGGCGATGGTCTCCCTATCCAACTGTGTCTTCAGTGTGTGCACCAAATATCGCGTTGCCATGCCTTCAAGGACTTGGTGGAGAGAAATGATGTCACTCTTCGGGAACACGCCAAGTTCCTCGCTGAGGAGCAGTTCAAGAGAGAGAGGGAGGAGAAAGAGAAAATTCTTAACCTGAACTGCCCCGAGTCACCGTTCATACAGTATATGGAGGTGCCGATCACCAACCAAAACACCATACTAGAGGGGTTCTTCAACCCTGAGCAGCCGCTTAACTCGGAAGTCAAGGAAAACTTTGAAGTTGTGGAAAAGACGGAGACTGCAACCGCGCCGGTCACTAACGAGGACACGCTAAACTCTGATGAGGAGAACTACCTCCAGCTGGTCGTGTTCCAAGCCACCACGACCGTCTCGGGCCGCCACGTGTGCAACCTCTGCCACAAGGAGTTCAAGCACGCGCGCTGGCTGAAGCAGCACATGAGATCCCATAGCAACTGGATTAAGGCGAACTGCAAGAAACCGCCCATGTGCCCCATTTGTGAGAGGACCTTTAAGGGTCCGGGTATGTTGAAAATGCACATGAGAACACACGAGCAACGCCCACCCAAGCAGCCCACGTGCTCCGTCTGCCAGCGCACCTTCCCAACTAAGACTTTGTTGTACCGCCATAGACAAACGCACTTTGAGCAGAAAACTCATCAGTGTACAGTGTGCGACAAGAGATTCTTCAGCGGTTATGCCCTGAGGTCACACATGGCTCGTCACAGAGGAGAGCGCCCTTATATATGTGCTAATTGCAACAAGAGTTTCTATAACCCGACAGATTTGAAGGTGCACTTCAGGCTGCACACAGGTGAGAAGCCGCTGAAGTGTTCGGAGTGCAACAAGACGTTCCGCCGCCACTCGACGCTCTGCCAGCACATGAAGAAGCACCGCGGCATCAGGAACCACGTGTGCAATGTGTGCAATAAGGGATTCTACGAAGTCTCCAAGCTTAATGCCCATATGCGGGTACATACGGGCGAGCGTCCGTACGAGTGCCAGTTCTGCGAGCGGCGCTTCGCCCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACCGGCGAGAAGCCCTACAGCTGCAAGCTGTGCTCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCACATCATCACGCATACCGGCAACAAGAGGTTCGTGTGCCCGGTGTGCCTGAAGGGCTGCACGTCGCGCACGGAGCTGCGCGTGCACAGCGCGCGACACGCGCCGCCCGAGGACCGCGCGCCGCGCCGCCTCGCCGGGACCGCCGCAGCCGCCGCCGCCGGAGACAAGCGGCACCACTGCCAATTGTGCGGGAAAGGTTACATAGAAGCGAGCTCGTACAGGAAACACTTGAAGACTCACATCACAAAGTCAGAAGGAGAATCGTCTAACTCCGATGGTACGGTACAGGGCTCCGGCAAGGGAAACAACACTCAGTGCCAGTCCGACTCGGCTAATGTCACAGCTGATAACGATGAACACAGTGATAACACTCATTCTACACAAGAGGACGTAACGGAGGCGGTGAACAATCCGCCGCCAGCCGAGCCGGCCGCGCCGCCGCCGCGCCGCTACAAGTGCGGCGCCTGCGTGAAGACCTACATGTATCTGCACAGCCTCAAGAAGCACATGATGACGCATGTACAGGCCGGTCAGCACCCGTACCCAGTGATATCGTCTGTGCAGTCGCTCCAACTTCAGCAGACACAACAGCAGCAGCCTCAGCAACTACAAGTACAAACCATACAGTTACATCCGCAACATCAACCTATTCAAATTCATGCGGTTGGTGTGCAGCAAGTGCAACAGCAACAGTTGCATGTTGCAACATCGTCGTGTCAGACTATGTTGCCTAATATATTACAGCTGCAGCCGGCGACGGTGGCGGTGTCGGGGCTGAGCCAGCAGGAGCTGAGCGGCGTGGCGCACCGCATCATCCTGCAGCCGCACCAGGCCGCGCCGCACCCCGCCGTCTACACCATCCACCAGCACCACTGA
- Protein Sequence
- MATANKMQNLNFDKICRACLQIKKDMRPLFEQLTATMLMGISKVQVEIGDGLPIQLCLQCVHQISRCHAFKDLVERNDVTLREHAKFLAEEQFKREREEKEKILNLNCPESPFIQYMEVPITNQNTILEGFFNPEQPLNSEVKENFEVVEKTETATAPVTNEDTLNSDEENYLQLVVFQATTTVSGRHVCNLCHKEFKHARWLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCDKRFFSGYALRSHMARHRGERPYICANCNKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCNVCNKGFYEVSKLNAHMRVHTGERPYECQFCERRFAQQSALIYHRRTHTGEKPYSCKLCSARFTTSSARNNHIITHTGNKRFVCPVCLKGCTSRTELRVHSARHAPPEDRAPRRLAGTAAAAAAGDKRHHCQLCGKGYIEASSYRKHLKTHITKSEGESSNSDGTVQGSGKGNNTQCQSDSANVTADNDEHSDNTHSTQEDVTEAVNNPPPAEPAAPPPRRYKCGACVKTYMYLHSLKKHMMTHVQAGQHPYPVISSVQSLQLQQTQQQQPQQLQVQTIQLHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVAVSGLSQQELSGVAHRIILQPHQAAPHPAVYTIHQHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761894;
- 90% Identity
- -
- 80% Identity
- -