Basic Information

Insect: Thyatira batis
Gene Symbol: -
Assembly: GCA_905147785.1
Location: LR990512.1:657154-659536[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.4 30 5.8 0.8 5 21 214 230 212 231 0.89

2 12 0.0013 0.098 13.6 0.3 2 23 258 279 257 279 0.96

3 12 0.00039 0.029 15.3 2.8 1 23 300 322 300 322 0.95

4 12 8.3e-05 0.0062 17.4 0.9 1 23 330 353 330 353 0.97

5 12 0.00029 0.022 15.7 1.2 2 23 360 381 359 381 0.95

6 12 7.7e-05 0.0057 17.5 6.6 1 23 387 409 387 409 0.98

7 12 8.4e-08 6.3e-06 26.8 0.4 1 23 415 437 415 437 0.96

8 12 5.5e-06 0.00041 21.1 0.9 1 23 443 465 443 465 0.99

9 12 4e-07 3e-05 24.7 0.3 1 23 471 493 471 493 0.98

10 12 9.2e-05 0.0069 17.3 0.2 1 23 499 521 499 521 0.98

11 12 9.5e-06 0.00071 20.3 2.3 1 21 527 547 527 549 0.96

12 12 4.9e-06 0.00036 21.3 1.0 1 23 555 577 555 577 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.4	30	5.8	0.8	5	21	214	230	212	231	0.89
2	12	0.0013	0.098	13.6	0.3	2	23	258	279	257	279	0.96
3	12	0.00039	0.029	15.3	2.8	1	23	300	322	300	322	0.95
4	12	8.3e-05	0.0062	17.4	0.9	1	23	330	353	330	353	0.97
5	12	0.00029	0.022	15.7	1.2	2	23	360	381	359	381	0.95
6	12	7.7e-05	0.0057	17.5	6.6	1	23	387	409	387	409	0.98
7	12	8.4e-08	6.3e-06	26.8	0.4	1	23	415	437	415	437	0.96
8	12	5.5e-06	0.00041	21.1	0.9	1	23	443	465	443	465	0.99
9	12	4e-07	3e-05	24.7	0.3	1	23	471	493	471	493	0.98
10	12	9.2e-05	0.0069	17.3	0.2	1	23	499	521	499	521	0.98
11	12	9.5e-06	0.00071	20.3	2.3	1	21	527	547	527	549	0.96
12	12	4.9e-06	0.00036	21.3	1.0	1	23	555	577	555	577	0.98

Sequence Information

Coding Sequence: ATGGATATAAGTGTTGAAGTGTTCGACAAAATATGCCGCGCTTGTTTATGTGAAGCGCCTAACATGCGGTCACTGTTTACGAAGGCGGACGGCCACAGTCATTATTTACTGGAGGTCTTCGCTTCTACAACAAATTCACACATTAGCGTTGAAGATAAACTTCCGAAACAGGTTTGTGGTGAATGTGAATCTATCATGTGCAAGGCTGAAGCGTTTAAACAGCGCTGCAACGAATCTGCCATCATTTTAAAGAAGGCTTACACCAATAGCCTAAATAATACAAACATTTTGAACACCAATCATACATCACTAATTAAATGTGAAAAAAGCGAAAATAATGAAAAATTTAAAGTTAATAAGCTAACAGACGCCGTAGAGATCGATATTCATGAATGTTTCGATAAAAAAGACATAGTTTTAAGTCAATTATCGACTTGTTTCGATCCTGAATCGACATTAAGTGCATTAGTACAACCCACTAAAGAACTGATAGTAAAAGACGTTAAAATAGAATATGGAGATATTGTGGAGCCCGGAGATTTATTTGGAAATGATTTTGATGATCGAGAACCACTTGAATCAGTACCTATAGACTTTAAATCTGAAGAGCCATCGGAGAAACAGAAATCTTACCCGTGCCACTGTGGACTGTCTTTCAAAAACAAAGATATATACAGAAAGCACGCCAAAAAGTCAAGCTGCGAGAAATATAAGAAAATAATCAAGAAATGTATGAAAAAAGATATTTTAATACCAATTAAGAATCAAATTGAATGTCAGAGTTGTAATAGGCAGTTCAAAACGGTTAGCGCATGGAATATACACCAACGGGCTCATAAAAATGTTGAAATTCATACCAAAAATGTTAAGGTTAAGAAAGCGGAGCCCACAGAGGACTTTCTATGTTCATTATGCTCAAGGAAGTGTAAGTCGGCTAAATCGTTAGAAGCTCACATAAGACGGCACGAAGAAAACTCAAACGTAAAGTACACATGTGAGCAATGTAAGCGAGAATTCAAGTACAAAGCATATTTAGATAACCATATTTTGTCCGTACACATGAGGGATAAGAGCTTAACCTGTGAATATTGTATTAAATGCTTCTCGACGCAGGAAAGTCTGGAAGCTCATAGGGAAGAGCATAAAACTGAAAAGAAACACCAATGTCATATATGTAATAAAGCATTTATCATGTTGTGTACGTTGAAAGATCATATGCGAACACATACGGGGGAGAAACCGTTTCTTTGCTCCATCTGTGGACGGGGTTTCAGTCAGAAGGCTAACTTGGCTCAGCATATGCGGAGACATCAGGGACTCAAGCCGTTTAAGTGTGAACAATGTGAAAAGAGGTTCGTATCAAAAGGCGAATTGGACGCCCACACACGCAAACACAGTGGCGCCCACCCCTTCGTGTGCGACGACTGCGGCAACGGATTCACCACCTCCAGTGCCTTGGTGAAACACAGGCGAACACACACCGGGGAGAGGCCCTACGCCTGTGACCTATGCCCCATGAGATTTGCAGCATCAGGAACCCTCAAAAACCATCGTAGAACCCACACAGGTGAACGCCCCTTCCAATGTTCTTATTGTGATAAAGCATTCGTTCAGCGAACTGATTTGATATCCCATATACGGTGTCATACCGGTGAGAGGCCATATATATGTAATCACTGCGGTCATGCCTTCAGGAAGGCAGCGGCTTTAAAAGCTCATGTGCGGTTACATGGTAAAGAAGGTTTAGGGATGCAGGGTGTCAATGTGATGTTGAACGGCATGCAGATGCAGTGTGATGGTCAGTGA
Protein Sequence: MDISVEVFDKICRACLCEAPNMRSLFTKADGHSHYLLEVFASTTNSHISVEDKLPKQVCGECESIMCKAEAFKQRCNESAIILKKAYTNSLNNTNILNTNHTSLIKCEKSENNEKFKVNKLTDAVEIDIHECFDKKDIVLSQLSTCFDPESTLSALVQPTKELIVKDVKIEYGDIVEPGDLFGNDFDDREPLESVPIDFKSEEPSEKQKSYPCHCGLSFKNKDIYRKHAKKSSCEKYKKIIKKCMKKDILIPIKNQIECQSCNRQFKTVSAWNIHQRAHKNVEIHTKNVKVKKAEPTEDFLCSLCSRKCKSAKSLEAHIRRHEENSNVKYTCEQCKREFKYKAYLDNHILSVHMRDKSLTCEYCIKCFSTQESLEAHREEHKTEKKHQCHICNKAFIMLCTLKDHMRTHTGEKPFLCSICGRGFSQKANLAQHMRRHQGLKPFKCEQCEKRFVSKGELDAHTRKHSGAHPFVCDDCGNGFTTSSALVKHRRTHTGERPYACDLCPMRFAASGTLKNHRRTHTGERPFQCSYCDKAFVQRTDLISHIRCHTGERPYICNHCGHAFRKAAALKAHVRLHGKEGLGMQGVNVMLNGMQMQCDGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -