Tsen022532.1
Basic Information
- Insect
- Thumatha senex
- Gene Symbol
- -
- Assembly
- GCA_948477245.1
- Location
- OX419752.1:9607299-9610319[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00081 0.081 14.4 0.6 1 21 49 69 49 72 0.91 2 10 0.0026 0.26 12.8 0.4 2 23 103 125 102 125 0.95 3 10 0.0017 0.17 13.3 1.7 2 23 148 169 148 170 0.95 4 10 0.00028 0.029 15.8 1.7 1 23 175 198 175 198 0.97 5 10 0.063 6.3 8.4 0.2 1 23 203 226 203 226 0.91 6 10 0.018 1.9 10.1 0.2 2 19 232 249 231 254 0.77 7 10 8.4e-05 0.0084 17.5 0.1 2 23 262 284 261 284 0.97 8 10 0.01 1 10.9 0.2 2 23 291 312 290 312 0.95 9 10 3.8e-06 0.00038 21.7 0.8 1 23 320 342 320 342 0.98 10 10 3e-06 0.0003 22.0 0.2 2 23 349 371 349 371 0.96
Sequence Information
- Coding Sequence
- ATGACGAAAGGTTCAATATTCCGTACAGTGGAGGACAAAAGTAAGAAAGCGGATGTTGCCAGCAAACTATTTTTAAAGAGACGCAATGTCGAATATGTTTTGCAATATAGCAATGTTACTCCCTTTATGTGGCATAAAGGCAAGTACAAATGCTTTTATTGCAACGAAACAACCAAAGACCCGGCATTGCTACGAGAACATACCGTAGATTTTCACCAACTTGAAAATCTAGAACTTGTAATTTTTGACAGAACAAAGAATAATCGAAACAAAGATGCCGCAGTCAAAATTGATGTCACTGGTATATCTTGCAAGCTTTGTCCTCATTCTGTAACGAATTTAGAAGAACTAATACATCATTTGATAATCGCACACGATGCTGAATATGACGTCAGTGTGCCCAATTGCTTACTACCCTTCAAACTGGACAAAGATCAACCTACATGTCCTACATGTGATATGAAATTTGCTTTCTTTGAATATCTGCTCAGACACGCCAATAAGCATCACTTATCTCATCAATATATTTGTGATGTATGTGGCACCAGTTTTCAAGGCGAAAATCATCTTAAAATGCACTATAGATATTATCATAGAGAAGGCGGATACACATGTGAATACTGTGGAATTAATCTTGCAACGTTGTCAAAGAAAATTCTACACGAGAAGAATGTGCATTTAGTAAATCTTTCAGAGTGTCCATATTGCCCAGAAACTTTCAAAAGCCCATACATTAAAAAACTACATTTAGCAAATGTACACAGCGTAGAGGAACTTAAAATAAAATGTCCTTATTGCCCAAAAGTGTATCCACAGGAGTCTATTATGTCAAGGCATATGAGAAGGGTGCATTTGAGAGAAAAGAACGTAGAATGCGAAGTATGTGGCGATAAGTTTTTTAGTCGATACGATGTAAAATTGCATATGGTTAAACATAACGCAGACAAGGGCAAGAAATTTGTTTGTTCCGTGTGCGGTAACAAATTTTCAAAGCGTAGTAATATGAACTCCCATATGCTAGTACATACTAGAGATAAAAATAATGTTTGTAAAGTTTGTAATGAAGCATTTGCTACTCAAAGCAATCTTAAAATGCATGTTAGAAATGTACATAATCGTTTCGATGAAACAACCATTATAGACGAAATTGACGAAAGTGATATTGTAAATATCAATATAATTAGAGACGACTTTGAAGGAGACGTTGCTGGAGATTTTATTCAATGA
- Protein Sequence
- MTKGSIFRTVEDKSKKADVASKLFLKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPALLREHTVDFHQLENLELVIFDRTKNNRNKDAAVKIDVTGISCKLCPHSVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCDMKFAFFEYLLRHANKHHLSHQYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGINLATLSKKILHEKNVHLVNLSECPYCPETFKSPYIKKLHLANVHSVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFSRYDVKLHMVKHNADKGKKFVCSVCGNKFSKRSNMNSHMLVHTRDKNNVCKVCNEAFATQSNLKMHVRNVHNRFDETTIIDEIDESDIVNINIIRDDFEGDVAGDFIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01285796;
- 90% Identity
- -
- 80% Identity
- -