Basic Information

Insect: Thumatha senex
Gene Symbol: -
Assembly: GCA_948477245.1
Location: OX419751.1:15739225-15753828[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.1 9.2e+02 1.6 1.2 1 18 49 66 49 66 0.93

2 11 7.6 7.6e+02 1.9 0.4 1 7 309 315 309 317 0.93

3 11 0.00012 0.012 17.0 0.9 1 22 421 442 421 442 0.97

4 11 1.4e-05 0.0015 19.9 2.8 1 23 461 483 461 483 0.98

5 11 1.3e-05 0.0013 20.0 2.5 1 23 489 511 489 511 0.99

6 11 0.00018 0.018 16.4 1.3 1 23 517 539 517 539 0.98

7 11 1.4e-05 0.0014 19.9 0.8 1 23 545 567 545 567 0.99

8 11 8.4e-05 0.0085 17.5 9.7 1 23 573 595 573 595 0.98

9 11 2.4e-06 0.00024 22.3 5.9 1 23 599 621 599 621 0.99

10 11 0.0037 0.37 12.3 8.7 2 23 628 650 627 650 0.96

11 11 1.4e-07 1.4e-05 26.2 0.2 1 22 656 677 656 677 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.1	9.2e+02	1.6	1.2	1	18	49	66	49	66	0.93
2	11	7.6	7.6e+02	1.9	0.4	1	7	309	315	309	317	0.93
3	11	0.00012	0.012	17.0	0.9	1	22	421	442	421	442	0.97
4	11	1.4e-05	0.0015	19.9	2.8	1	23	461	483	461	483	0.98
5	11	1.3e-05	0.0013	20.0	2.5	1	23	489	511	489	511	0.99
6	11	0.00018	0.018	16.4	1.3	1	23	517	539	517	539	0.98
7	11	1.4e-05	0.0014	19.9	0.8	1	23	545	567	545	567	0.99
8	11	8.4e-05	0.0085	17.5	9.7	1	23	573	595	573	595	0.98
9	11	2.4e-06	0.00024	22.3	5.9	1	23	599	621	599	621	0.99
10	11	0.0037	0.37	12.3	8.7	2	23	628	650	627	650	0.96
11	11	1.4e-07	1.4e-05	26.2	0.2	1	22	656	677	656	677	0.98

Sequence Information

Coding Sequence: ATGGAAGATCTCAGGCGGTGTAGAATCTGTCTGGTGAAAGACGTTCGTTTGCAGCATGTACAAGATATGCGCCTTGTGGCAACGTACTATTATTTAACATCAAAGTCATTGGAAACACTAAATACAGAAGACACCAGACCACTGTACGCCTGCTACATCTGCCGTGCTAGGCTTCGAAACTGCTATCAACTTAGGAAGATGTGTCTCCAAAGTGAAGACCTGTATGTGCAGATGATGAATAATGAAGTGTTAGAGCGAACAGAGGAAGTATTGGCCGGCCTGAGAGTGGCATCTGTGATTCATATAAGCTTGGGGTCTTTCGACACACACGTCAGTACCACTGGAGACGGTGTAAAAGTGCTTGGCGCCACTCGCTTTGGAGAGAAGTTCGATGTCGCAGAAGATAAACCTCTAGAAGAGAATAGCCCAGAAGTAGAGAAGATAAGAGAAGGTTGTACGCCAGATGGTATCACTGTAGACCGCGTTAAGAGTGAACCGGTCGACTTTGATGAAGATCTGTGCGCTGTACTGAAGTATGAAGAATCTGAGGAAGATACTCCTCTTATTATCTTGAAACCTGAAGAGTTTGATGCTGAGACAGGTGTTTATCATCCTGAGCTAATAGCTGCAGCGCTGAAAAATGACGAAATATATCGTTTGAAACGTGCCATTGTAAAATTGGAAAGGATCGACGACCCTAACAATTTATTGTATAAACTATATATAAAATATACAACACGAAATATCTTTAATGAACCTGATGCTATAAATTATATAGAGAAATGTGTAATAAAAAGAGAAATCACAGTTAAAACAGAAAATAGCTCTTTATTTGGTGATGAATTATCAGAGGATTTTGATAATGATAAAGTAAATTTTGATAATTTCCATGTAAAGGATGATATATCAAATAGTAATGATAATTATAGATGCAGTGATTGTGGAGGTGTTCGTGAGCCTGTGACAAGAGCTGCGGCGCAGAAAAAGGACAACATGGATTTCATTTTAAAACGAGCAATTATAAAATTGGAAAGAATTGACGACAGATTCAGTAATCTGTATAAAATATATAAAAAATATACAACCAAAGATATTTCTACTACAATTAATAATAATTATAATAAAGAAAATAATATGTTAAGTAATAATATACCTGTGTTTGATAGTGAAACTTTAGTAGTTTTTGACAATGATAGTAATTTTGATGTAAGTGATGATATTAATAAGAAAAGCAATGCTGAATCAAGAAATAATGGTAAATATCAATGCGATGATTGTGGAGCTACGTATAAACACATGCAAACATTGAAAGCTCATAAACGCACACCATGTTTCGGTATAAAACCTCGTGCGCGACTACCCTCAGTTATCAAAACTACATATGAATGTAAAGTCTGCAAAAAGAACTTTAAACGCATAGATTCATTCAAAAATCATTTGCGTTTACACGCCGGTAGCAAACTTTACCAATGTGATATATGCAACAGAGGTTTTCAGCATAAGACAAGTTGGACCACTCATATGCGGATACACAGCGGAGAAAAACCATATCGATGCGACCAGTGCGGTAAAGAATTTCGAGATATACGCGTTCTGAAATCACACAAAACAACGCATAACACTGAAAGGATGTATCAATGCGATGTGTGTAAAAAAACATTTATCTCAAAAGACCGCGTTCGGGGTCATATGCGCGTTCATTTCCCTTATAAAATACATCGATGCGAAGTTTGTAATAAAACTTTCAAGCGGAAATGTCATATGACAGAACATATGCGATCACACCGCGGCGAATATCAATGCGGTGTGTGTAAGAAATGTTTTAGTTCAAAATTTGAACTAAAATATCATATGCGTAAACACGATGATTTCAAACCATTGGAATGTAGTATATGCAAAAAACGTTTCACAAGGGTTAAGTGTTTAAAACATCACATTATGAAGTGTCATACTGGTGAATTACCGTACCAATGTTCTCTGTGTGATAAAGCGTTTGTGACAAACGGTGAATTGACGCGACACATGCGAACTAAAGATAAGAGTGTATGA
Protein Sequence: MEDLRRCRICLVKDVRLQHVQDMRLVATYYYLTSKSLETLNTEDTRPLYACYICRARLRNCYQLRKMCLQSEDLYVQMMNNEVLERTEEVLAGLRVASVIHISLGSFDTHVSTTGDGVKVLGATRFGEKFDVAEDKPLEENSPEVEKIREGCTPDGITVDRVKSEPVDFDEDLCAVLKYEESEEDTPLIILKPEEFDAETGVYHPELIAAALKNDEIYRLKRAIVKLERIDDPNNLLYKLYIKYTTRNIFNEPDAINYIEKCVIKREITVKTENSSLFGDELSEDFDNDKVNFDNFHVKDDISNSNDNYRCSDCGGVREPVTRAAAQKKDNMDFILKRAIIKLERIDDRFSNLYKIYKKYTTKDISTTINNNYNKENNMLSNNIPVFDSETLVVFDNDSNFDVSDDINKKSNAESRNNGKYQCDDCGATYKHMQTLKAHKRTPCFGIKPRARLPSVIKTTYECKVCKKNFKRIDSFKNHLRLHAGSKLYQCDICNRGFQHKTSWTTHMRIHSGEKPYRCDQCGKEFRDIRVLKSHKTTHNTERMYQCDVCKKTFISKDRVRGHMRVHFPYKIHRCEVCNKTFKRKCHMTEHMRSHRGEYQCGVCKKCFSSKFELKYHMRKHDDFKPLECSICKKRFTRVKCLKHHIMKCHTGELPYQCSLCDKAFVTNGELTRHMRTKDKSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -