Tsen021429.1
Basic Information
- Insect
- Thumatha senex
- Gene Symbol
- -
- Assembly
- GCA_948477245.1
- Location
- OX419734.1:21917618-21941073[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-08 2.5e-05 24.9 0.0 4 38 488 521 485 526 0.89 2 2 1.3e-07 6.8e-05 23.4 0.0 3 38 586 620 584 625 0.90
Sequence Information
- Coding Sequence
- ATGATACCGTCTGGGCACAAGAACATGCTGCTTATGTTTCAAGGTTACACTTATTCGAAGATGCACACTGACCGCCGCTGGTATTGCTCTAAGCGACGCAGTGGATGCAATGCTAAGGTTACCTTAGACGTTAATGGTAAGATATTTCAAGTGGAATACGAACATGACCATGCCCCTCCTAATTACCACATCACAAAATACATCAAGATACCCTCTGGACATAAGTACAGGCTGCTGATGCTTAATGGTTACACCTATTCCATGACGGGTACAGATCGCCGCTGGTACTGTTCCAAGAGAATGAGCGGATGCAAAGCCAGGGTCTTTTTAGACTATCAGGAAAGAATAGACTTCTCCTATACTAAGCATAACCATAGTCCTCCTCCGTACCACAAGACAGCCAGTGGTCATTATATACCTATCAGAAGTAATGCCATATTAAAGAGAAAAGCCGCCAGCCTTGCTACATGTACCAATAACAATGTTTCTGTTTCTACTAACAAAGTACATGTAACTAATTGTATTAATAAACCACGTGTTACCAATTCTACAAACACATCACGTCTTACTGATACTACTAAAACGTCACGTCTTACTGATGCTACTAACACATCACATGTTACTGATTCTAGTAAAACTTTACATATGACTAATTCTATTAACTCATTGCACGTAACTGATTCTAATAACACATTACATGTTATTGATTCTATTAACACATTACATGTTACTGATTCTATGAACACATTGCATGCTACAGACGCTCTTAACGCATTACATGCTACTGACGCTATTAACTCATTACATGCTACTGATTCTATTAACACTTTGCATGTTACTGGTTCTATTGACGCATTGGATGTTAATGATTCTATTAATACACTAGATGTTAATGATTCTATTGACTCATTGCATGTTACTGATTCTATTAATACATTACATGTTACTGATTCTATTGACACTTTACAAGTTCCTGATTGTAGTAACGAATTTCATGATATTGATTCTACGGACACATTACTCGTTAATGCTTCTAATGACTTATTACATAATACAGATACTACTGACTTATTACATAGCACTGATACTACTGACTCATTACTTGTAGGCGATTGTACTGATACATTAGATGTTAATGATGCGACTGCCACATTACATATTACTGATTCAAATGACACATTACCTAATTTAGTCTTAAATAGTTTAGACTTACCTAGTTTAGACTTACCTCATTTAGATTTATCTAGCTTAGAAAATAGTAACCATAGGAATCGTAAAAACAGGAGAAATGGTATACGGCAACATTCGTGTATCGACGCGACAGGATTATTCGCAAACGGCGCGTCGGAAAAAGAGTGTTCCTTAGATACTTACTATACACAGCGTTTTCGTGTAAAATCCAAATTTAAAACTTCACAAGCCATGTATAATATCTATGTGCGTAAAAATTACGATGAAAACCACATAAAGCTTGCAATAGAAGCGGTGAAGAATGGAATGAGTTTGAATGCAGCTTCTATAAAATTTAAAGTTCCCCGCACAACAGTCGTTTACAGAATGAGTGGCTTATTAGGACGACGCACTCGACTATCTACTGACGAAGAAAATGAACTAGTCCACTGGATTACATTGTATAATAGTGGCGGTTCCTGGACCAAGAAGGATTTAATAGCTTTTGTTGCACAGTATTTAAAAGAGAAAAATATGGAGCATGTTTTCAAAGATGGCGCCCCAGGTCGCCGTAATTACGATGACAATCAAATACAATTGGCAATCGACGCAGTAAATAAAGGTATGAGTTTGCATGCAGCATCTATAAAATTCAAAGTACCTAGGACAACAGTAGTTTACAGAATGAGCGGTCTTTTAGGTCGACGTACGCGACTCTCTGCCGACGAAGAAACTGAACTAGTTCACTGGATTACTTTGTACAACAGTGGAGGATCTTGGACCAAAAAGGATTTAATAGCTTTTGTATCACAGTATTTAAAAGAAAAAAACATGGAGCACATTTTCAAAGATGGTGTCCCCGGACATAAATGGGTCAACTTATTTATACGAAGACATCCAGAAATAAGAAACTGTTTACGAATTTCAAAGTTACACATGCTACAAGGAAATAACTTTACAGGATGGAAAGACTTTAGTTATGTACCAGAACTACACCTTCTCCATACAGGGTCCAAAAAAGAAGCTATACTTATACTGTTCGAGAAGATGCCGCAGGAAATGTAA
- Protein Sequence
- MIPSGHKNMLLMFQGYTYSKMHTDRRWYCSKRRSGCNAKVTLDVNGKIFQVEYEHDHAPPNYHITKYIKIPSGHKYRLLMLNGYTYSMTGTDRRWYCSKRMSGCKARVFLDYQERIDFSYTKHNHSPPPYHKTASGHYIPIRSNAILKRKAASLATCTNNNVSVSTNKVHVTNCINKPRVTNSTNTSRLTDTTKTSRLTDATNTSHVTDSSKTLHMTNSINSLHVTDSNNTLHVIDSINTLHVTDSMNTLHATDALNALHATDAINSLHATDSINTLHVTGSIDALDVNDSINTLDVNDSIDSLHVTDSINTLHVTDSIDTLQVPDCSNEFHDIDSTDTLLVNASNDLLHNTDTTDLLHSTDTTDSLLVGDCTDTLDVNDATATLHITDSNDTLPNLVLNSLDLPSLDLPHLDLSSLENSNHRNRKNRRNGIRQHSCIDATGLFANGASEKECSLDTYYTQRFRVKSKFKTSQAMYNIYVRKNYDENHIKLAIEAVKNGMSLNAASIKFKVPRTTVVYRMSGLLGRRTRLSTDEENELVHWITLYNSGGSWTKKDLIAFVAQYLKEKNMEHVFKDGAPGRRNYDDNQIQLAIDAVNKGMSLHAASIKFKVPRTTVVYRMSGLLGRRTRLSADEETELVHWITLYNSGGSWTKKDLIAFVSQYLKEKNMEHIFKDGVPGHKWVNLFIRRHPEIRNCLRISKLHMLQGNNFTGWKDFSYVPELHLLHTGSKKEAILILFEKMPQEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -