Basic Information

Insect: Thrips palmi
Gene Symbol: stc
Assembly: GCA_012932325.1
Location: NW:6058088-6064130[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2 1.4e+04 -4.4 1.6 15 19 546 550 545 550 0.81

2 15 0.017 1.2e+02 2.5 0.3 4 10 579 585 578 586 0.97

3 15 7.2e-06 0.051 13.3 16.2 4 18 598 612 596 613 0.92

4 15 2.4e-07 0.0017 18.0 10.6 1 19 649 667 649 667 0.98

5 15 2 1.4e+04 -4.8 0.3 6 10 697 701 697 702 0.87

6 15 1.4e-08 9.5e-05 22.0 13.4 1 19 707 725 707 725 0.98

7 15 1.4 9.9e+03 -3.6 0.6 5 10 758 763 758 763 0.88

8 15 9.9e-06 0.069 12.8 15.7 4 19 776 791 769 791 0.87

9 15 1.6 1.1e+04 -3.8 2.0 5 10 820 825 820 825 0.93

10 15 0.17 1.2e+03 -0.7 12.4 1 18 831 852 831 853 0.84

11 15 9.3e-10 6.6e-06 25.7 13.8 1 19 858 876 858 876 0.98

12 15 2 1.4e+04 -4.9 1.3 6 10 905 909 905 910 0.64

13 15 2 1.4e+04 -4.7 10.0 9 19 922 933 912 933 0.75

14 15 2.3e-05 0.16 11.7 12.5 1 15 969 983 969 994 0.89

15 15 7e-05 0.49 10.1 13.8 3 19 1002 1020 1001 1020 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2	1.4e+04	-4.4	1.6	15	19	546	550	545	550	0.81
2	15	0.017	1.2e+02	2.5	0.3	4	10	579	585	578	586	0.97
3	15	7.2e-06	0.051	13.3	16.2	4	18	598	612	596	613	0.92
4	15	2.4e-07	0.0017	18.0	10.6	1	19	649	667	649	667	0.98
5	15	2	1.4e+04	-4.8	0.3	6	10	697	701	697	702	0.87
6	15	1.4e-08	9.5e-05	22.0	13.4	1	19	707	725	707	725	0.98
7	15	1.4	9.9e+03	-3.6	0.6	5	10	758	763	758	763	0.88
8	15	9.9e-06	0.069	12.8	15.7	4	19	776	791	769	791	0.87
9	15	1.6	1.1e+04	-3.8	2.0	5	10	820	825	820	825	0.93
10	15	0.17	1.2e+03	-0.7	12.4	1	18	831	852	831	853	0.84
11	15	9.3e-10	6.6e-06	25.7	13.8	1	19	858	876	858	876	0.98
12	15	2	1.4e+04	-4.9	1.3	6	10	905	909	905	910	0.64
13	15	2	1.4e+04	-4.7	10.0	9	19	922	933	912	933	0.75
14	15	2.3e-05	0.16	11.7	12.5	1	15	969	983	969	994	0.89
15	15	7e-05	0.49	10.1	13.8	3	19	1002	1020	1001	1020	0.94

Sequence Information

Coding Sequence: ATGGGAAGGATAAGGATGGCGTCTGATTCAAGCAATGGTGTGAGCCACAACGGCAGTTCCACAGCGTTTACTGATTTGGTCAACAACTCTACACTGACTGCCACAGCTAGTGAATTTGTGCCCAATGCAGCCAACAGGGACAAATCTTTCAACAAAAAGTCAAGACCTCCCAAAAATGTTACTTCTGGATTCAAGAGAGAAACAAGAGAGCCTCttaatgctggcaatggaagtGGAGAAAATGTGTCCAGAGAGGCAAATGTGAGCAGACAGAGGTTCCGCAACCGTTCAGGAAAAAACTTGTCCAATTCAGATGATGTCAGTGGCAATGCGGGCCGATCTTCCGGCAGGTCAGACAGTCCCAATGGAGGACAGGGATCAAGGGCGTCAGCACGATTCTCTGGGAAGTATTATAACGGCCAGCGAGGATATGGCAGAAATGGTAAAGCAGGACCTAATGCAAGTTCCAGCAGCTATTTCCAAGGGCCAAGGGAGGAAGAAGGTGCTGTTGGTGGAGAAAATTTAAACACTCAGCACAGCAATGACCAAGTCCCTGGCTCCAGCCGTACAGGAGATCGTAATGGTAACAAGGATCAAAATATAGATCAGTATTCTGATAAGCCATTCTACAATGACAAGCCCAAAAGTAGGGAGGAACGGGATTCAAGTGGAAACAAATTTCAGAGGAAGGAACAGAATGTAGACCAATATTCTGATAAGTCATTCTACAATGACAGGTCTAAATATAGGGAAGAAAGGGATTCTAGTGGAAACAAATTTCAGAAGAAAGAACAGAATGTAGACCAATATTCTGAGAAGTCATTCTACAATGACAGGTCTAAATATAGGGAAGAAAGGGATTCTTGTGGAAACAAATTTCAGAAGAAAGATTTCAGCAAAAGTTTTAACAAAGAATTTGATGAAGGAAGAGGCAGATCGAAGTATTGGGATCGCAGCAGTAATGCTGATAGAGAAACTGCTACATATTATCAAGATAATGCCTCTTCATATAGGTATCCTGATCGCAATGAGAGTTACTACCCTGAAAAGAAACAAGACTATTACCAAGAAAGGTATGATCGATCTAATAGACGATTTGGAGATCGTTTCCCTGATAGGCAAAGAAATGATCAGAATCATGATAAATATTTTTCTAATTATGATCAAGACAGTAGAGGCTATGATCGTACTTATAGGTCTCGAGGGACTAGATTTCAATATGAATCTTCAAAAGAAGATCAGAGCAGACAGCGCAACAATTCTTACTATAAGGGAAGAAATCCCACCCAAAATTATAACACTCAAGAAACGTTTGGTTCAGACAATGTGAAATTCCAATCTGGTGACAGATATGAGAATCGGGATAGTGCTGGCCCAAGTGCCAGAGACAACAATTATAGTTCTCACTCTCGCTTCAGCAGCCAAAAGGGCTTTAACATGCGAGacGGAGATGATGTGTCTCAAAGAGATCGTTTGACAGAACAGCTGACTCGTGGTACCCTAGAGTGTCTTGTCTGTTGTGATAGAGTCCGACAGCAGGACTCTGTTTGGAGCTGCTCTAATTGCTTTCATGTTCTGCATTTGAAATGTGTTATGAAATGGGCCAAGTCTTCCAAAGCAGAAACTGGCTGGCGCTGTCCGGCATGCCAAAATGTAACAGAAGCAGTACCATCTCAGTATCGCTGTTTTTGTAGCAAGGCTGTTGAACCTCTGTGGAATCGTCAAGATACTCCGCACACATGTGGAGAGGTTTGCGGAAAATCACGGGAAAGTCAGCGACCATTATGTGTTCACCATTGTACCTTGCTTTGCCATCCCGGACCGTGCCCTCCTTGTCTTGCTCAAGTTGTTAGAAATTGTGGATGTGGGAAAACTTCTCAAATGGTGAAGTGTGCTTTAGAAAAGCCATTGCTGTGTGAATCGATTTGCGGACAACCTCTTAACTGTGGAGCTCACTTCTGTGAACTTAGCTGTCATACTGGATCCTGTGAACCTTGTCAACTTAAAATTGAGCAAGTCTGCTTTTGTAAGAAACAAAAGAGAGAGGTTGATTGTATCAAAGAGAACCAGAATGTTTTGGAATTCAGCTGCAGTGATGTTTGTGGGCACAAATTATCTTGTGGGAACCACACTTGTGAAGAGATTTGTCATGAAAATGAATGCAAACCTTGTCAGCTTACTCCAGATATAGTTACTCATTGTCCATGTGGACAGACAGAGCTAAGCTCAGAACCAGACAAGAAGAGAAAGACTTGCACTGATCCAATTCCAACTTGTGGCAAAGTGTGCGCCCGAAAGCTTACTTGCGGTCAGCCAAGCAGCCCTCATGTTTGCAAATCTAACTGCCATTCTGGCCCATGCCCCCCGTGCCCTCGGACCACGATGGTTCGATGCCGTTGTGGACACATGGACAGAGAGTTGCCTTGCACTCAACTTACCACCAAGGCTGATGATGCAAGATGTGAGAAAAAGTGCTCTAAAAAGCGAAGTTGTGCCAAGCACAAGTGCAACCAGCCGTGCTGTATTGAAATAGATCACCCATGTCCTCTTCCTTGCAACCACTTTTTGAGTTGTGGTCTGCATCGTTGCGAGCAGCTTTGTCATCGAGGCCACTGCCAACCCTGCTGGAGGACAAGTTTTGAAGAATTGTATTGTGAATGCGGAGCTGAAGTGTTGTACCCACCAGTGCCTTGTGGTACAAAGCCACCTCTATGTACCCGCCCATGTCCTCGCCAACATGAATGTGATCATCCTGCTTTACATAGTTGTCACAATGATGCCAATTGTCCTCCTTGCTCAGTTCTCACCACAAAACATTGCTATGGAAATCATGAGTTGCGTAAAACTATTCCTTGTCACCAGAAAGACTTCTCTTGTGGTCTTCCCTGTGGCAAAGAGTTGCCATGTGGTCGGCACAAATGTATTCAGTTGTGTCATAAGGACGACTGCCTGCGCTCAGGTGGTGTTTGCACTCAACCATGTGTTATTCTACGACCCACCTGCCAGCATCCATGCTTAGCTCCTTGCCATGAGGGAAATTGTCCTGATGTACCTTGTAAAGAGACGGTGAGGGTCACTTGTGAATGTGGCCATCGTTCAGCTATGCGACCATGTGCTGAAAACACCAAGGAATACCAACGTATTGCTACCTCAATTCTAGCCTCTAAAATGGCTGATGTACAACTTGGCCACAGCATTGATATTGGTGACATTATGGGAAATGCAAGCACCAAGAAGCTCTACCTTAAGTCGCTTGAATGTACTGAAGAATGCAAAGCCATTGAAAGGAACCGACGAATGGCTATAGGTCTCCAAATTCGTAACCCTGATCTTAGTCAAAAACTAACCCCTCGTTACTCTGACTTCATGCGAGGCTGGGCTAAGAAAGATCCTGCGTTTTGTCAATATGTCCATGATAAGCTCTCAGAATTAGTAAAATTGGCCAAAGAGTCCAAGCAGAAAAGTCGAAGCTATTCATTTGAAGTAATGAACAGAGAAAAACGCCAATTTGTCCATGAGTATTGTGAACATTTTGGGTGTGAGTCTGTTGCCTATGATCAGGAGCCTAAACGAAATGTTGTTGCAACAGCTCAGAAAATAAAGGCTTGGCTGCCAAGTGCGAGCTTGCTAGAGCTAGTACAGCGTGATGCTGGACAGCGCAGAGTACCAGGGCCCATGTTGAACTCTGTACAGAAACCAGTTTCCCGGGGAATGGATACCTTGTCAATGAAGTGGACCACCAAGCCCCCTGGAAATGGAGCAACTTCTTCGTCATCCCATAGCAGTGTTTTGAATTCTGTGTCAAGTCTGTCTGATGACTATTATGCGGGTGGCTCATCGAGCAATACATTTATAGACCACTTCAATTCATGA
Protein Sequence: MGRIRMASDSSNGVSHNGSSTAFTDLVNNSTLTATASEFVPNAANRDKSFNKKSRPPKNVTSGFKRETREPLNAGNGSGENVSREANVSRQRFRNRSGKNLSNSDDVSGNAGRSSGRSDSPNGGQGSRASARFSGKYYNGQRGYGRNGKAGPNASSSSYFQGPREEEGAVGGENLNTQHSNDQVPGSSRTGDRNGNKDQNIDQYSDKPFYNDKPKSREERDSSGNKFQRKEQNVDQYSDKSFYNDRSKYREERDSSGNKFQKKEQNVDQYSEKSFYNDRSKYREERDSCGNKFQKKDFSKSFNKEFDEGRGRSKYWDRSSNADRETATYYQDNASSYRYPDRNESYYPEKKQDYYQERYDRSNRRFGDRFPDRQRNDQNHDKYFSNYDQDSRGYDRTYRSRGTRFQYESSKEDQSRQRNNSYYKGRNPTQNYNTQETFGSDNVKFQSGDRYENRDSAGPSARDNNYSSHSRFSSQKGFNMRDGDDVSQRDRLTEQLTRGTLECLVCCDRVRQQDSVWSCSNCFHVLHLKCVMKWAKSSKAETGWRCPACQNVTEAVPSQYRCFCSKAVEPLWNRQDTPHTCGEVCGKSRESQRPLCVHHCTLLCHPGPCPPCLAQVVRNCGCGKTSQMVKCALEKPLLCESICGQPLNCGAHFCELSCHTGSCEPCQLKIEQVCFCKKQKREVDCIKENQNVLEFSCSDVCGHKLSCGNHTCEEICHENECKPCQLTPDIVTHCPCGQTELSSEPDKKRKTCTDPIPTCGKVCARKLTCGQPSSPHVCKSNCHSGPCPPCPRTTMVRCRCGHMDRELPCTQLTTKADDARCEKKCSKKRSCAKHKCNQPCCIEIDHPCPLPCNHFLSCGLHRCEQLCHRGHCQPCWRTSFEELYCECGAEVLYPPVPCGTKPPLCTRPCPRQHECDHPALHSCHNDANCPPCSVLTTKHCYGNHELRKTIPCHQKDFSCGLPCGKELPCGRHKCIQLCHKDDCLRSGGVCTQPCVILRPTCQHPCLAPCHEGNCPDVPCKETVRVTCECGHRSAMRPCAENTKEYQRIATSILASKMADVQLGHSIDIGDIMGNASTKKLYLKSLECTEECKAIERNRRMAIGLQIRNPDLSQKLTPRYSDFMRGWAKKDPAFCQYVHDKLSELVKLAKESKQKSRSYSFEVMNREKRQFVHEYCEHFGCESVAYDQEPKRNVVATAQKIKAWLPSASLLELVQRDAGQRRVPGPMLNSVQKPVSRGMDTLSMKWTTKPPGNGATSSSSHSSVLNSVSSLSDDYYAGGSSSNTFIDHFNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -