Tpal008821.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- nfxl1
- Assembly
- GCA_012932325.1
- Location
- NW:11581077-11585679[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.7 1.2e+04 -3.9 3.2 14 19 192 197 192 197 0.87 2 18 0.15 1.1e+03 -0.5 0.8 4 10 228 234 227 234 0.95 3 18 1.8e-08 0.00013 21.6 16.9 1 19 242 259 242 259 0.99 4 18 8.8e-09 6.2e-05 22.6 11.7 1 19 295 313 295 313 0.99 5 18 0.24 1.7e+03 -1.2 0.5 6 10 338 342 337 344 0.90 6 18 1.5e-06 0.01 15.5 17.3 3 19 350 366 342 366 0.86 7 18 2e-05 0.14 11.9 11.7 1 18 401 418 401 419 0.97 8 18 0.19 1.3e+03 -0.8 0.5 1 10 428 437 428 437 0.75 9 18 0.00015 1.1 9.1 17.5 1 18 453 470 453 471 0.97 10 18 8.7e-11 6.1e-07 29.0 15.0 1 19 480 498 480 498 0.99 11 18 0.73 5.1e+03 -2.7 0.8 5 10 526 531 526 531 0.93 12 18 0.0045 32 4.3 8.1 9 19 546 556 544 556 0.90 13 18 0.00028 2 8.2 7.1 1 12 566 576 566 576 0.96 14 18 0.79 5.5e+03 -2.8 6.1 14 19 604 609 604 609 0.90 15 18 0.12 8.3e+02 -0.2 6.3 1 12 645 656 639 667 0.78 16 18 0.003 21 4.9 18.3 4 19 680 695 678 695 0.94 17 18 2 1.4e+04 -4.5 1.9 15 19 729 734 728 734 0.59 18 18 1.2e-07 0.00084 19.0 10.8 1 16 739 753 739 759 0.90
Sequence Information
- Coding Sequence
- ATGGAAAGGGCACCTAGAGATGGGGGAAGTCGCCCAAACCCTTGGCACCAGaaaagaggagggggtgctgctgcgcctggtggtggtggaggcggcggttCTAAAAGAGGTCCCTCTAAGAAGCAGGGTGGTTCTAAGAACAGTGGGAACTTGCAAACCAACCGAGTTGAAGAGAAAAGTAGCATTGCTAAGTTTGAAGAAGCAAGGTTGAAGATGGAGCAAGCTGCTAAAAAACATTTTGTGTCAGACTATCAGTCTTCAGATGAGGAAGATGATGTTCAAATTGATCCTATTGTTGGAGCGGTTCTTGAGACCTATGCAGCAATGGGTGGTGTAAACGCTGATTTGGGACGGACCCAGCACTTTCTTGAAGAAGCTTTTCAGTCAGGTGCGGCTACTTGCCTCATATGTATTGGCAGTGTCAAAAGAATTGATCCAGTTTGGAGCTGTTCAGCttgcttttgttttcttcACCTTACATGCACGCAGCGTTGGGCGAAAGACTCGTTACTTCATCAAAAAAACGCATTGGAAGACCTTCCCAGAGATAAACATCCTTTGAAGATTACTTGGCCATGCCCAAAGTGCAGAAAAGAATATGAGAGTAATGATGTGCCACAGAGATACTACTGTTTTTGTGGACAAAAGGAAGACCCAGCCTACCATGCATGGCTTGTTCCTCACTCTTGTGGTGAAACTTGTGGGAGGCCTTTGCAACCGGCCTGTGGCCACACATGTCTTCTCTTGTGTCACCCAGGACCATGTCCACCATGCCCAAAGACTGTTCGTGTTCCCTGTCATTGTAAAAAAGAAAATCCTCGGCCTCAGAGATGTAGTCAGAAGTCTTGGTCATGTGGTAGTCAATGTAGTGCAGTTCTATCTTGTGGAAGCCACAGATGTTCTGCCGTTTGCCACCCTGGTTTATGTGAAGCATGTCCAAGAAAAAGTGAGCaactgtgtgcgtgtggatCCCAACGGCAAAATCGACCATGTGCATCTCCCTTCTGGCAGTGTGAGAAGGTGTGTGGGAAGAGGCTTTCTTGCAAACACCATTCATGTGAAAAGGTCTGCCACTCTGGACCTTGTGGGGCATGTCCCCTAAGTGAAAACCGCTCTTGCCCTTGTGGAAAAATATCGTACAAGATACTTTGCACAGAGGAGATTGCCCCATGTGGGGATACTTGCAATCGTATTCTCAACTGTGGAGTACATGCTTGCCCTGAGCGCTGCCACAAAGACAAATGTGGGACATGTCTTGAGGTAACAGTCAAGCAATGTCGCTGTGGCTTGCATACTAAGGAATTGCCTTGTGCAAAGGAGTTCCTGTGTGAAACAAAATGTAAACGCTCCAAGGATTGTGGCCGTCATCCTTGCAATCGCAAGTGCTGTGACACTCAGTGCCCTCCTTGTGAGAAAGTTTGTGGTCGCACCCTGACGTGCGGCCAGCACAAGTGCGAGTCTGTCTGCCACCGCGGGCCGTGCTACCCGTGCCCCGTGACTGCCTCTGTGAGCTGCAACTGTGGCGCCTCGGTCATCCACGTGCCTTGCGGCCGGCAgagacgcacgcgcgcgccgcgctgctccaagTTGTGTCTGAATCCACCTGAATGCCATCACAAAAAGCGAGAAGATCACGCCTGTCATTTTGGTCACTGTCCGCCTTGTACACAAGTGTGTAACATGCAGCATTCTCAGTGTGGTCACAACTGCTCCAAACCGTGCCACTCTGCTGTGTGGATGAAGGTGGAAAGACAGGCCCCGGCTGGACCTTGGGAACTTGCTGCCCCGCAGCTTGTGCAGCGTAATCTTCCATGCCCACCCTGCTCGGAACCGCTTCAAGTCATATGTTTAGGAAAACATGACACTACAACCATGCCTTGTCATGCAGCAAAATCCATGTCATGTGGGAAAAAGTGTGGTAGAAATTTGAAGTGCACAAATCATCTTTGTGACCTAGAATGCCACACTGTCAATGGTGATGAAGACTGTGAGACATGTGAAAATGCATGTGAGCTTCCAAGAACTCCGGGCTGTCCTCATGAGTGCCCTCTTCCCTGCCATCCAGCACCCTGtcctccgtgccgcgccacactgCGCCCGCGCTGCCACTGTGGTGTCACTCAGGTTTATATTAAATGTGCGGAATGGACCAAACCCGGCTGTGATCGAGTAGCCCTAACATCGTGCGGGAGCCCGTGCCCCAAAAGTTTTCCATGTGGGCACAAGTGTACCGCACTTTGCCATCCTGGGGATTGCCCAGACGCTGACAAATGTGCAAAGAAAACCAAGGCATACTGCCCATGCCGACGAGTCAAGAAAGAAGTACGCTGTGATATCTTGCGATCAGCAGAATTTTCTCTGCCCTGTGATGAAACATGTGAGGTGCTGAAACTTCAAAAAGAAAAGTCCGAGGTTGATGAAAACAAGAAACGGCGTGctaaagaagaagaagaagctaGAATTGAAGCGGAAAGATTTCAGAAGCGTATGGAAGGAACAGGTCGTCGGAAAACTCGTAATAGGAAtcaaaatgaaatgaaagatGACAATAAGCGGTCTGCCTTCTTTTATCTCTCAGTAACTgctgttgttattgtttttgtgGCAATTTTGTACTTCCAATTGTCttaa
- Protein Sequence
- MERAPRDGGSRPNPWHQKRGGGAAAPGGGGGGGSKRGPSKKQGGSKNSGNLQTNRVEEKSSIAKFEEARLKMEQAAKKHFVSDYQSSDEEDDVQIDPIVGAVLETYAAMGGVNADLGRTQHFLEEAFQSGAATCLICIGSVKRIDPVWSCSACFCFLHLTCTQRWAKDSLLHQKNALEDLPRDKHPLKITWPCPKCRKEYESNDVPQRYYCFCGQKEDPAYHAWLVPHSCGETCGRPLQPACGHTCLLLCHPGPCPPCPKTVRVPCHCKKENPRPQRCSQKSWSCGSQCSAVLSCGSHRCSAVCHPGLCEACPRKSEQLCACGSQRQNRPCASPFWQCEKVCGKRLSCKHHSCEKVCHSGPCGACPLSENRSCPCGKISYKILCTEEIAPCGDTCNRILNCGVHACPERCHKDKCGTCLEVTVKQCRCGLHTKELPCAKEFLCETKCKRSKDCGRHPCNRKCCDTQCPPCEKVCGRTLTCGQHKCESVCHRGPCYPCPVTASVSCNCGASVIHVPCGRQRRTRAPRCSKLCLNPPECHHKKREDHACHFGHCPPCTQVCNMQHSQCGHNCSKPCHSAVWMKVERQAPAGPWELAAPQLVQRNLPCPPCSEPLQVICLGKHDTTTMPCHAAKSMSCGKKCGRNLKCTNHLCDLECHTVNGDEDCETCENACELPRTPGCPHECPLPCHPAPCPPCRATLRPRCHCGVTQVYIKCAEWTKPGCDRVALTSCGSPCPKSFPCGHKCTALCHPGDCPDADKCAKKTKAYCPCRRVKKEVRCDILRSAEFSLPCDETCEVLKLQKEKSEVDENKKRRAKEEEEARIEAERFQKRMEGTGRRKTRNRNQNEMKDDNKRSAFFYLSVTAVVIVFVAILYFQLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -