Tpal007466.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- pnr
- Assembly
- GCA_012932325.1
- Location
- NW:1147503-1157509[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-17 6.2e-14 51.0 3.5 1 35 544 577 544 578 0.97 2 2 3.7e-19 7.4e-16 57.1 7.4 1 35 606 639 606 640 0.98
Sequence Information
- Coding Sequence
- ATGACTTTGGCCGTGCTCGCCGCCATGGACGCGAAGCAGGAGGACCAGGACGTGCCGCAGGATGCGCCGCAGCCAGAAGAACACCAggcagcggccgaggcccccgcccaggacgacgccgagcagcagcagcatttagagcaacaacaacaacaattagagcaacaacaacagcatttagagcaacaacaacagcaacaacaacaacttgaacagcagcagcaagagcAAGAACAGctagagcagcagcagcagctggagcagcagcaactggaacagcagcaacaacaactagagcagcagcagcttgagCAGCAgatgcagctgcagcagcagcaggagtcgcggcccgccgtcatcacgcggcgccgcaaccTGGTGCGCACCATCACGACGGCGGGGCTCAtcaccgaggccgaggcggaggacGTCAGCGAGGACGCGCAGGAGGGCCGGGAGCGGCAGCAGACCCCCGGCAGCAGTCCCGGggacgcgagccgcgccaacgccgaggtgctcgtcgagaggcccgtggacgcggcgggcgaggcggccgccggccaccccgaGGAGCAGTTCGTGGTCCAGGACATGTCCACCATCGCGCTGGACGGGCGCGCCGGCGTGCAGGTGGCACACGAGTACAGCTTCCTCACCACCACGGGGTCgcccggcgagcagcgcgtcgtcctggTGCCCGAGCGCGGCTACGTGGGGGACTCGCGCTACGCCTACACCATGGTCAGCATGATGCCGGAGGACAAGCTGGACACCGGAATCCTGCAGTTCACGTCCAGCGAGCCCCTGCCCCGGTTCCCGCACATCGCCAAgggcgcgtcggcggcaccccaccacccccaccacctgcaccaccacgcgctgcccccgctcgACCACCACCAGCGGCGCTACGGCACGCAGGGCCTCGTCCCCGGTTACcagGAGatgtccacgccgccgccgctggctccGCCCCACCAGCTCGACGTCGAGGTCGGCGGCAACGtccccggccagcagcacctcgTGGAGGGCTACGTGGTGTCCACCTCGCTCAAGTACGAGCACGACGAGCAGGAGGAGCACCAGCAGCTtttgccgctgcccgccgccacctaCACCACGCTGGAGTCCGGCGGTAGGGCAGAGTGTCTGCCCGGTGCCGGGGAGGCTGTCTACACGCGGGTCAACTATATGGAGGGTCCGTGGAAGGTacccgaggccggcgtcgacgccATGACCACCTCCTCCTCGTACTCGCCGAACACGTCGCCGGTCCACCTCAAGGCAGACCCCACCCtcaccacctccaccagcTACTCCCCCGCCTACAAGCACTACTCGCCCTACATTCAGGGGTCCGCGCACCTCGGCTACGACTCGGCCGAGTCCCCCACGCCGCAGGGCGGCCTGTACAgcaacggcggcgcgccgccgtacTCCGtgtccgcgtcgacggcgtggtccgggtcgccgcagcccggcgaggcctACGTGTTCCACCAGTCACCGGGGCtgtccggcgccgcgggcctcccCTCCGGGGCCACGTCCTACCCCTACTCCGGGGACGCGTGGACGCTGGCGGAGGACGGCTACGACTCGGggcacggcctggacgtGAAGGAGTGCGTCAactgcggggcgccgcacaCGCCCCTgtggcggcgcgacacggAGGGCAACTACCTGTGCAACGCGTGCGGCCTGTACAACCGGGTGAACGGCGTGAAccggccgcccgtccggcccaACATCAAGaagaccgcgccggccgttaGCCCCCAGACAGGCAACCGGAGGATGGGGGTGATGTGCGCGAACTGCaacaccacgaccaccacgctGTGGAGGCGGAACAACAATGGGGACCCCGTGTGCAACGCCTGCGGCCTCTACTACAAGCTGCACGGGGTGAACCGGCCTCTGACCATGAAGAAGGACAGCATACAACAGAGGAAGCGCAAACCCAAAAACCCCGGTTCCGGTATGGGGACACCGCCAGTAAAGCAGGAGGGCAAACCCGGCGCCGGCATGCACCCGTACCGCCGCTAG
- Protein Sequence
- MTLAVLAAMDAKQEDQDVPQDAPQPEEHQAAAEAPAQDDAEQQQHLEQQQQQLEQQQQHLEQQQQQQQQLEQQQQEQEQLEQQQQLEQQQLEQQQQQLEQQQLEQQMQLQQQQESRPAVITRRRNLVRTITTAGLITEAEAEDVSEDAQEGRERQQTPGSSPGDASRANAEVLVERPVDAAGEAAAGHPEEQFVVQDMSTIALDGRAGVQVAHEYSFLTTTGSPGEQRVVLVPERGYVGDSRYAYTMVSMMPEDKLDTGILQFTSSEPLPRFPHIAKGASAAPHHPHHLHHHALPPLDHHQRRYGTQGLVPGYQEMSTPPPLAPPHQLDVEVGGNVPGQQHLVEGYVVSTSLKYEHDEQEEHQQLLPLPAATYTTLESGGRAECLPGAGEAVYTRVNYMEGPWKVPEAGVDAMTTSSSYSPNTSPVHLKADPTLTTSTSYSPAYKHYSPYIQGSAHLGYDSAESPTPQGGLYSNGGAPPYSVSASTAWSGSPQPGEAYVFHQSPGLSGAAGLPSGATSYPYSGDAWTLAEDGYDSGHGLDVKECVNCGAPHTPLWRRDTEGNYLCNACGLYNRVNGVNRPPVRPNIKKTAPAVSPQTGNRRMGVMCANCNTTTTTLWRRNNNGDPVCNACGLYYKLHGVNRPLTMKKDSIQQRKRKPKNPGSGMGTPPVKQEGKPGAGMHPYRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -