Tpal002582.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:18462855-18566622[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.7 22 5.4 0.4 3 23 470 492 468 492 0.90 2 14 1.1 36 4.8 1.8 1 21 604 624 604 628 0.90 3 14 0.095 3 8.1 0.1 2 22 688 710 687 713 0.89 4 14 0.075 2.4 8.5 0.2 1 21 741 761 741 762 0.95 5 14 1.1 36 4.8 0.0 1 21 778 798 778 802 0.90 6 14 1.5 46 4.4 2.0 2 23 826 848 826 848 0.90 7 14 0.033 1.1 9.6 0.8 1 23 853 876 853 876 0.95 8 14 0.3 9.4 6.6 2.4 1 23 954 975 954 975 0.97 9 14 0.042 1.3 9.3 4.3 1 23 981 1004 981 1004 0.88 10 14 0.00048 0.015 15.4 3.6 3 23 1075 1096 1073 1096 0.92 11 14 4.1 1.3e+02 3.0 0.0 3 23 1103 1125 1101 1125 0.86 12 14 0.023 0.74 10.1 1.0 1 23 1134 1156 1134 1156 0.98 13 14 0.0052 0.17 12.1 3.9 1 23 1162 1184 1162 1184 0.98 14 14 0.034 1.1 9.5 5.3 1 20 1190 1209 1190 1211 0.94
Sequence Information
- Coding Sequence
- ATGGCGAAATTTATCCACATCCTGGTGATGTTTTTACTCATCATGGTGAAAATAACCCTAATCATGGTGAAAATTCGTAtcatggtgaaaattctcATCATTGCAAAAATTCTTATCATTGCGAAAATTCTCATCATTGCGAAAATTCCCTTCATCGTGGTGAAAATTCTCATCAtgattatggtgaaaattcccctcatggtgaaaattctcATCATCATGGTGGTGAAAATTCTCATCATGGTGGAAACTCTTCATATTAGAGAGTGCATCCACACGTTCCCCCGTCTGACGCTGACGCACTCATGTCCGGGGTTAACTAGGCCGCGCGTTAAAAccttcggcgcggccgctagCTCATCGGGTCCAAAAACTAAGGGCCCAAAATCCAAGGGTTCAAAATCCAAGGGTTCAAAATCCAAGGGTCCAAAATCCAAGGGTCCAAAATTCAAGGGTCCAAAATCCAAGGGTCCAAAACCCAAGGGTCCAAAACTCAAGGGTCCAAAACCCAAGGGTCCAAAATCCAAGGGTCCAAAATCCAAGGGTCCAAAATCCAAGGAACAAAATCCAAGGGATCGAAATCCAAGGGTCCAAAATCCAGGGTCCCAAATCCAGCGTCTGGGATTCGAGCGTGCACTAGTTTTGCGTACCAGCGCAGGACACACAGCACTCTGCCAGGCGAAAATAGAGGACATCCTGGAGGACATCCTGGAGGACATCGTGGAGGACATCGTGGAGGACATCGTTGAGGACATCGTTGAGGACATCCTGGAGGACATCGTGGAGGACATCGTGGAGGACATCCTGGAGGACATCCCGGAGAACGTCCTGGAAATTTGTAGTGTGCAGACAGTTATCAGCGCCTTCCTGATTgacggcgaggagcagGACACGCACttctgcctgcgctgccgccgcaccatcgagggcctcgacgagtacgtgcagcaccgcgacgccgacggctgGCGGTtcccgccgcggacgcacaCGGGCGGCAAGTGGCGGCCGcagacgccgcgcctcgacgacgaggtgctctcgacgacgccgccgccggacgcTGGCGGCAAATGGGGCCCGCCGCGGACCCACACGGGCGGCAAGTGGACGCCGCAGACGCCGagcgacgtccccgacgacgacaagGAGGTGCTCCTgaccgacgcggcgccgccgccgccgaacgcgGGCGGCAAGtgggggccgccgcccacgcacacGGGGGGCAAgtggacgccgcgcgccgagcccggcgagGACGAGCACTGCGACGAGCAGGACttccccccgcccggccacaccCGGGGCAAGTGGGCGCCGGGCATGGCCAACAAGGTCCGTGCCCTGCTCGAGCcctccgcgcccgccgcggtgcgcaaATCGGGCAGCACGGTCCAGTACTGGTGCGGGTCCTGCAACCGGCGCCTGGCCAGCAGCAAGATGTACGAGCGCCACCTGCAGTCCGAGCTGCACTCCCGACGCACCCTCCCGGAGCGCCAGCTCGACatgcgcccaggccgcccaggcgaCATGCGCCCAGGCGACGGTCCGGAGCGGCCGGgcttcggcctcggcgccggagacgccgcggccccggcgacgccaggacgccgtcagggccgccgccgaggacacCGCCAGGGGCTGGAGCGGTGCTCGgtgtgccgcgcgcgcgtgcagcgccaccaggTGGGCAAGCACCTCGTGTCGCACTTCCActggcgcagcacgcgcagcacggccgtgggctccgcggcggccgccctcaTCCTGGACAACAtcgaggccgtggtgcgcCAGTCGCCCTTCCAGTGCGGCCTCTGCAAGTTCTACTGCAACTCGTCCGAGGCCTTCCGCCAGcactgggcctcggcctcgcaccgcctcaaggacgagcaggccgccgccgcggacggccagTACTGGTGCTCGCCGTGCGAGGTGGGCGCCGAGTCGTCGCTCGACATGGAGGCCCACCTGTGGGGGGAGGAGCACcgcgaggtggaggccgccgtcaacagGAGCGTGGCCGTGGTCGTGTCCCGCAggacggcgctgcgctgcaagGCGGCGGGGTGTCCCGCCGCGTTCCGGTACAACGCGCAGCTCGGCCGCCACGAGAGGCAGTCCGGGCACCGCGGTcccggggcgctgccggggctgccgtcgTCCTCCACGCCCTGCGCGTCCACGGCCGGCGACCGCTACCAGTGCCGGTACCGGTGCAAGGGCTGCGGCGCCCTGCGTcggtcgcgcctcgcgctgcagAAGCACATGCTCAAGTGCACCAGCCAGGTGGGTGGCAGGCTGAAAGCTCTCCGTGGCAACTACTACTGCGGCGTCTGCTCTCTCAACttcccgacggcggcctcggcggctcaGCACCGCCTGGGCCaagcgcaccgcgacgcggtcCGGGACCGCCggctgggcagggccggcagggccacggcgtcggggcggccgctccgccggtgcccgcactgccgcgagcagtgtcgcggcctcgcggcgctgcggctccaCTTGGACGACAAGCACCCCGACAGGAAGCAccggtgcgcgctgtgcggcctgGCCTTCACGCTGCCGCAGGAGGTGTCTCGGCACCACCGcgacgtccacgccgccgcactggccgccacgccgagcggcgacgccgccacgggcgccgcgctgctgctgccggccgtggGCGAGCAGCCCCCCTTCAGCTGCCGGACCTGCTTGTTCGTGACGGACTCCAGGGCCGAGCTGGTGTTCCACGGCGTGCTGCACGGGCCGCCCGAGCTCGTCGCGCAGCCGGAggtcgccgaggacggcggcggcgacgccccggaccccgcggccgcgcggtaccGCTGCCCGTTCTGCAGGCGACTGTACCGCAAGCCCGCCCTGCGGACCCACCTCCACGTCCACACGGGGGAGCGGCCCTTCCGCTGCCGGCACTGCGACAAGGGCTTCAGCCGCAAGGACTCGTGCGTGACGCACGAAGTGACGGCGCACGTGCTCGTcgaccgggacggccgggacggcggcctggaggacgacgagcacctgcagcgcgaggagcagcgcctccaggacgccatATCGTCCATcgtggacgacggcgcggcgaggacgccgccgacggtgacggcgtcgacggcggcgcggcccaccaGGAGGACGCCaaccagtggcggcgcggaccaACGCGAGCGGAAGCACCTGTGCGACGTGTGCGGAAAGTGCTTCTTCAACAAggcGACGCTGCGCCAGCACCAGGTGTCCCTGCACGGCGTCAAGCCGCTGGCGTGCTCCTGGCCCGGCTGCGCGGTCCgggcgcggtccgccgcggaGCTGCGCTCGCACCTCGCCACccacgcgcaggccgcggggcagcccgccTTCCAGTGCACCGCCTGCCCCTTCCGCGCCCGCACCAAGCAGCTCCTCAAGAGGCACGAGAAGATCCACACCGGCGAGAAGGCGTACAAGTGCGAGCATTGCGACTTCGCGACGCGCGTGGGCTCCCACCTGTTGAGGCACCGCCGCCTGCACACGGGCGCCAAGCCCTTCTGCTGCCCGCACTGCAGCTACCGCTGCAACAACCTGGAAAACCTGCGCAAGCACGTCCTGCAGACCAACAAGCACCCCGGCAAGAGCATGTACGAGTGCCGCTTCtgcgccgaggctggcgccGGCGCCTTCGCCACCAACCTGGCGACGGAGTTCCGGGGCCACCTCgccagcgagcacggcgacgtgttccggagcgccgcgtccgccgcgtccttcGTCGCCGGCATCTACGACAAGGAGGCCGACACGGCGGCCGTCGTGTCCGAGACCCCCGTGTCCGGGACCGTCGCtgacggcgtcgtggagggTCATGTCCAgagtggcggcgcccgggccaAGACGGCACGCAGTAAACGCCGGAAGGACTGCAAGGACGCGAAGCAGGGCGTCGGCGCGACCGAAGCCGTCCTTGACCTGGGCTTGGGGCCCGCGGATCCTTCGATGTCCGTGATCGCCATGCCCTCGGTCGAGGAGGACCTGCCCACCTCGCTCCTGCCCAAGCACGCGCTGCTGGACAGCGAACTGTTCCCCCTGGTGGTGACGGACCCCGACGCGGCGCAGGACGTCGTGTACGTGCAGCTGGAGGACATCGACGGCGGCATCGTGGTCGTCAACGCCTGA
- Protein Sequence
- MAKFIHILVMFLLIMVKITLIMVKIRIMVKILIIAKILIIAKILIIAKIPFIVVKILIMIMVKIPLMVKILIIMVVKILIMVETLHIRECIHTFPRLTLTHSCPGLTRPRVKTFGAAASSSGPKTKGPKSKGSKSKGSKSKGPKSKGPKFKGPKSKGPKPKGPKLKGPKPKGPKSKGPKSKGPKSKEQNPRDRNPRVQNPGSQIQRLGFERALVLRTSAGHTALCQAKIEDILEDILEDIVEDIVEDIVEDIVEDILEDIVEDIVEDILEDIPENVLEICSVQTVISAFLIDGEEQDTHFCLRCRRTIEGLDEYVQHRDADGWRFPPRTHTGGKWRPQTPRLDDEVLSTTPPPDAGGKWGPPRTHTGGKWTPQTPSDVPDDDKEVLLTDAAPPPPNAGGKWGPPPTHTGGKWTPRAEPGEDEHCDEQDFPPPGHTRGKWAPGMANKVRALLEPSAPAAVRKSGSTVQYWCGSCNRRLASSKMYERHLQSELHSRRTLPERQLDMRPGRPGDMRPGDGPERPGFGLGAGDAAAPATPGRRQGRRRGHRQGLERCSVCRARVQRHQVGKHLVSHFHWRSTRSTAVGSAAAALILDNIEAVVRQSPFQCGLCKFYCNSSEAFRQHWASASHRLKDEQAAAADGQYWCSPCEVGAESSLDMEAHLWGEEHREVEAAVNRSVAVVVSRRTALRCKAAGCPAAFRYNAQLGRHERQSGHRGPGALPGLPSSSTPCASTAGDRYQCRYRCKGCGALRRSRLALQKHMLKCTSQVGGRLKALRGNYYCGVCSLNFPTAASAAQHRLGQAHRDAVRDRRLGRAGRATASGRPLRRCPHCREQCRGLAALRLHLDDKHPDRKHRCALCGLAFTLPQEVSRHHRDVHAAALAATPSGDAATGAALLLPAVGEQPPFSCRTCLFVTDSRAELVFHGVLHGPPELVAQPEVAEDGGGDAPDPAAARYRCPFCRRLYRKPALRTHLHVHTGERPFRCRHCDKGFSRKDSCVTHEVTAHVLVDRDGRDGGLEDDEHLQREEQRLQDAISSIVDDGAARTPPTVTASTAARPTRRTPTSGGADQRERKHLCDVCGKCFFNKATLRQHQVSLHGVKPLACSWPGCAVRARSAAELRSHLATHAQAAGQPAFQCTACPFRARTKQLLKRHEKIHTGEKAYKCEHCDFATRVGSHLLRHRRLHTGAKPFCCPHCSYRCNNLENLRKHVLQTNKHPGKSMYECRFCAEAGAGAFATNLATEFRGHLASEHGDVFRSAASAASFVAGIYDKEADTAAVVSETPVSGTVADGVVEGHVQSGGARAKTARSKRRKDCKDAKQGVGATEAVLDLGLGPADPSMSVIAMPSVEEDLPTSLLPKHALLDSELFPLVVTDPDAAQDVVYVQLEDIDGGIVVVNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -