Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:7762933-7770312[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.6 49 4.3 0.2 2 23 66 88 65 88 0.92

2 14 0.024 0.75 10.1 1.3 2 23 198 219 197 219 0.96

3 14 0.052 1.6 9.0 1.6 2 21 231 250 230 251 0.94

4 14 7.6 2.4e+02 2.2 2.0 1 23 362 384 362 384 0.87

5 14 1.7 53 4.2 1.1 1 20 673 692 673 695 0.94

6 14 0.042 1.3 9.3 0.4 1 23 703 725 703 725 0.98

7 14 0.0015 0.046 13.9 0.4 1 23 866 888 866 888 0.98

8 14 0.062 2 8.7 5.6 1 23 1044 1066 1044 1066 0.97

9 14 0.0077 0.24 11.6 0.1 1 23 1123 1145 1123 1145 0.96

10 14 0.00024 0.0077 16.3 0.1 1 23 1151 1173 1151 1173 0.95

11 14 0.021 0.67 10.2 0.7 1 23 1302 1324 1302 1324 0.96

12 14 0.44 14 6.1 4.4 1 23 1330 1352 1330 1352 0.98

13 14 0.0018 0.058 13.6 1.3 3 23 1436 1456 1434 1456 0.98

14 14 0.26 8.4 6.8 2.7 1 23 1466 1488 1466 1488 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.6	49	4.3	0.2	2	23	66	88	65	88	0.92
2	14	0.024	0.75	10.1	1.3	2	23	198	219	197	219	0.96
3	14	0.052	1.6	9.0	1.6	2	21	231	250	230	251	0.94
4	14	7.6	2.4e+02	2.2	2.0	1	23	362	384	362	384	0.87
5	14	1.7	53	4.2	1.1	1	20	673	692	673	695	0.94
6	14	0.042	1.3	9.3	0.4	1	23	703	725	703	725	0.98
7	14	0.0015	0.046	13.9	0.4	1	23	866	888	866	888	0.98
8	14	0.062	2	8.7	5.6	1	23	1044	1066	1044	1066	0.97
9	14	0.0077	0.24	11.6	0.1	1	23	1123	1145	1123	1145	0.96
10	14	0.00024	0.0077	16.3	0.1	1	23	1151	1173	1151	1173	0.95
11	14	0.021	0.67	10.2	0.7	1	23	1302	1324	1302	1324	0.96
12	14	0.44	14	6.1	4.4	1	23	1330	1352	1330	1352	0.98
13	14	0.0018	0.058	13.6	1.3	3	23	1436	1456	1434	1456	0.98
14	14	0.26	8.4	6.8	2.7	1	23	1466	1488	1466	1488	0.96

Sequence Information

Coding Sequence: ATGCAGCCGGAGCTGgtcctccagcagcgcggcgaccggTCCACCATGCACAAGCCCCAGGCTTCTGGCACCGCAGGTGTGTCCCCGGGAGGCactccgcggcgggcggacgcggatgccgcgtcgtcgccgtcctcgtcgtcgtccggagTGACGTCGGGCACGTCGGGGCGCCTGCCGCTGTACCAGGTGCTGCGCTGCTCGCTGTGCGACTTCCGGACGCCCTTCTTCGCGGACATGTCGCGCCACATGGCGGGCGTGCACGGCAACAGCAAGGGCGTGAGGGTGCCGCCGACGCTGgcaccggcgccgccgtcctccgtcccgccgtcgacgacggcaaagcgccccgccaagccgttGCCGAACCTGATCCCCAtccaggccgccgtcctgccgcaggcccgcaccacgcccacgccgacaccgccgccggcagccccagcagcgccagcggccccagcggccaaCGGCACCGCGGTCAACGGCGGCTCCAGCAACGGCGATGAGGCCGCCGAGACCGCCAAGAAGAAGAACTCGTTCTTCGATCAGCTGCGGCTGTACCCGGGGAACGTGGAGGGCTCCGAGCTGGTGTGCGTCCACTGCGGCCACGAGGCCAAGAACCTCTCCGAGCTGGTGCGCCACACCAAGCTGCACCAAGGCACAGGCCGAGGCATCGGCACCTCGACgcgctgccagcactgccggcAGCGGTGCAAGACGagcgccgacctggccgtgcACCTCCAGGCGTGCcccaaggccgtggccgcggccgctgagGAAGGTGCGGAGGCagcggaggccgccgtcgacaaCCTTCCCAAGATGGACGCGGAGCCTGCCTTCGAGTTCGAGGAATTCGAACGCATATCTGCAGCGAATGCCAACCCTCTGCCCGTCCGCCTGGCGGaggacagcgacgacgacgtcccggTGCCCCCCGATGACAGCGTCCCCAGGGCTCCGGCGGCGCAGATGGGCGTCGAGACTGGGCCCGGCTACGGCCTGGTCGCCAACCACGCCGAGTGGACCGCCCTGGAAAATAGCCCCAAAGGAACAACATTCACCTCGAGGAAGgTGTTCAAATGTCCACATTGCACATTTTGGGCTTCAACTGCTTCAAGATTTCATGTTCACATGGTTGGCCACTTGAATAAGAAGCCATTTGCTTGTTCTGTGTGCAAATATAGATCAAATTGGCGCTGGGACATAACAAAACACATTCGACTGAAGGAAGCTCGTGATCCTTCACATGCAAATGCCAAAACTTTAATGACAGATGAAACTGGTCGTAGAAACTATTCAAAATACAATTTGGACTTGCTTTGGCTTAGAATTGCTGAGCCAGATCCTGAAAATTTGCACCCGATGATGGCTTCTGGTAAAACGGCCTCTGCTTCAGAGGCAGGACCAAGTCCTTCATCTTCAAAGTCAGCGTCTGGTCTCATTTCTCCTCTTAAAGCAGCTATAAGTCTTCTACCTGCCAAGGAAGGGCAAGGCCCAGTTCTTCCTGCTGCAAAGACTGTGACTATTCTCCCTGCTCCTCCAAAACTAACACGAGCCCCAATTCATCGCATCCAAAATGCCCGTCGTACATCATCACCTGGAGGACTGCTacgcccaccaccacctctTCAAGCTGCTGGAACTCAGAATTCCAGCCAAGTCGTCACTCCACAGTCAGGTGTGAGGACACAGTCTCAGGGACAGGTTCAAGCTCCGCCTCAACAGCCTCTCAAAAGACCAGCAGACACACCTGTACCCAAGGTTGGCTCTGACCCAAAAAAGCCAAACACCGATCCGAAAAAGTCAAACACTGACTTAAAGAAAACTGTGTGGAGATGCAAGCAATGTTACTTCAGAGATGGTGATAGAGCTGTTGTACTTACTCATGTGAAAGGCCATTACCGTCAACAACAGGAAGCTGCATTGGCCAAAGGTAAAAATGCTTCAAGCAGTTCTCAAGAACCTAAACCACAGGAGCCTCAACAATCTGTGCTGAAGAAAGCTCCATTCCGATGTGACACGTGTCCATTTGTGTCTGCCTCTGAATCTTTGATGCAGTCACATGTGAGCTGTCACAAGCAAAGGGATGATGTCTTCTTCAAATGTTTCTACTGTCCTTTCTATGTTGCTACTAAGGAGGAAGTTATTCAACACATGACAGTCCATCAGCAAAGTTCCAAAGGGGAAAGTAGCAGCACCTCTTCTGTCAAGTCAGTGGCATCAAAAAGCAGTTCTGGTTCACCGTCTTCTAGTCAAGCTGCTTCCAACAAAACAGAAGCTCCACTAAGCAATGTGCAGGTGAAGAAAGAAGTCGAATCTGATCAGGTTACTTCCACTGATCCTGAGGAAGAAGTTCAAGCCCCTAATCAAGCTCCGGCACCACCAACCTTAGATTTTCACAATGCTACTGAAGCTCCTCTTTGTTGGGTTCATCGAGATGGTAAACTTCAAAAAATGCTGCGATGCAGATATTGTCCTCATGTCAACTTACGAAGAACTAACATGCTGGAACATGAGAAAATGCACTCAAAACGTTCCCATCTTTCCTCAGAAGAAATGAGTGATAATCCAACCCAGTACTCGCCTTATCCATGCACAGATTGCAGTTATGTTTGCAACAATGCTGGAGTTTTATCATCACACATGAAAGTACATTTTGGCAGCTATCCTCAAGCTTATGCCTTTTATGACCCTTACAAAAGTGAGCATTTACAAATGAAAGAGATTGTAGACAGATTCAGTCTTAAAATGAAATCAGATGATTCATCTCAGAAGTCTGCTCCTCCTAAAGATCCAGTTGACACTGGTAATGAGAACAAATTAAGTGGAATTAATGTCATGAGCTTGTTGGATCCAAATCAGTCTCTAACTGATGCTGTTTTGGCAATGAAGAAGAAATTTAATTTGGAGTTAGATGGTGAACCATTTGCTGAGCCTGTAGAAGATTCGGCAGAATCACCACCATGTTCTCCACTAAAACAATTAAATGATGGGGCTGACCCAAATGCATCAGAAATGCATGAAGAAAAACAGCTTCACTTTTGTGTGCAGTGCCCAGCTAGATTCTTGTTCCGAAAGGAATTAGGAATTCATTCTCGTTTTCACAATTTGTACTTGATCCACAAATGTGACCATTGCTCATACACTGCGAGGCAACGACCACATTTGCAAGCTCACTCCAAAGTGCATTCTGATGATTACCAAGATAGGACAAATGCTCTCTTGAAGATGTACAGTGTCAACAAAGAGTACCCTAAACCTCGAGTTGTGTGTGTCAATCTGAAGGCTGGGGTTCCTGGGACCCTCTGGATTGTAGTCAATACTGACTTTCGGGAAGCACCTCCTCCAACAGCCAACTTCGTGTGTGGGAAATGCCCCGCTTCATTTTTCAAGAATGATGCTTATCAAGCGCATCTTGCCCTGCATGGCAGTAACAATGCACACAAATGTCCCATTTGTGACTATGCTGTGAGAACATACGGCAATCTTATCAAGCATGTGATCGCACATGGCTGTAGAGCAAGTGTGGCTAAGAAAATTCTTCAGGGTCGAATGGCAGTCCCTGAATCTTTGCGTCCTCCTCCAAGTACTGAAACCTCTAATGTAGTTGTGCCCAAAGAAGAACCTCAGTCCTTTGACAGTGAAGAACAGGGAGACCAAAGTCAAAGTCAATCTTCGAGAAGTAATGATGTGATAGATGGGGAGCATGAAGGGAGAGATGATTGCAGTATGGATGTAGATGGAAGAGATGAGTCGGGTGTTGAAAAGAACACTgacgacagagacagagagagcacTGCCTCTAAATCACCTCAAAGTTCTAGTTTTACTTCAGGATGTCCAGACTTTGTGTACCCTACCTACTGCAGAAATGGACGAGTTAAAGTGAAAAGGTTCAAATGCCAGAAATGTCCCTCTGCTTTTGAGAAAAAGGACCAGTACCTTGTTCATGTGAGTCTACATGGTTCAAAGCAGAAGTACAAATGTACCAAATGTGATTACTCTGTGAAGTTCTTTGCAAATCATATTCAACACTTACGTAGGCATCAAATAAGTGAAGATGCTAAGAGTAAGGATGATTCTGAGCCACAGACTGCAGAAAATGAGGAATTTATTCCAGAGGATACTGAAAACATCCCATCTCCTTCTCCACCATCTCCCACTCGTTCTGCCAAAACCActggagggaaaggggagaaaCTCTCAGTGGCTGACAAACAAGCTATTATGGTACTGCAGCAAAGACGGGCCAAAAGAGCTGCTATCTCCAGAGAATCTTTGGATAAGAATTACTGGTGCTCTCACTGCCCTTATTCTAGTGTTCGTAGAGATCAAGTTGAAAGCCACATGAGGCGACACATTGCAGTGTCTGGAGTGCGTCATGCGTATGTCTGTGACCATTGCGATTACTCTGTTCCTATCAAGCACTTCTTGCGTGATCACTCTAAATTGCATTTTGATGTCAGCAAAGCTCCTAGGCCGGATGCATACATGATATGTGACGGGCTTGAACTTTGGGCTAGTTCTGGCTTCACTGgtaaaaataaatcaaaagGAAAGGTGCTAATATTCCAAGACAAAGGAGCCAATTTAGCTACTGACCGATTTTTACCCCCATTATCTTGTGAGGAAGATGAGGATAGTAATGGTTCAGTAGAGAAGATTTTTGTAAATCCAAGAACATTTGAGTCAGAAAATGTCAATGAAGTAGGTACCAAAGAAGCCATGGACACATCTGGTGAGGTAGAAAATGAAGAGGATGGAGATTCAGACTCAAGACGGAGTGAGAAATCAAATGATGGTGCTGAAAATGAAGATGGTGAAGAGATTGCAGCGTCTGCAAGCTGTAGTTTGTCTCTAACTTCTGAAAACAAAGCAAGTCGCTCATGTAGTCCTCAGTCAGTTAAATCTATGGAGAACTAA
Protein Sequence: MQPELVLQQRGDRSTMHKPQASGTAGVSPGGTPRRADADAASSPSSSSSGVTSGTSGRLPLYQVLRCSLCDFRTPFFADMSRHMAGVHGNSKGVRVPPTLAPAPPSSVPPSTTAKRPAKPLPNLIPIQAAVLPQARTTPTPTPPPAAPAAPAAPAANGTAVNGGSSNGDEAAETAKKKNSFFDQLRLYPGNVEGSELVCVHCGHEAKNLSELVRHTKLHQGTGRGIGTSTRCQHCRQRCKTSADLAVHLQACPKAVAAAAEEGAEAAEAAVDNLPKMDAEPAFEFEEFERISAANANPLPVRLAEDSDDDVPVPPDDSVPRAPAAQMGVETGPGYGLVANHAEWTALENSPKGTTFTSRKVFKCPHCTFWASTASRFHVHMVGHLNKKPFACSVCKYRSNWRWDITKHIRLKEARDPSHANAKTLMTDETGRRNYSKYNLDLLWLRIAEPDPENLHPMMASGKTASASEAGPSPSSSKSASGLISPLKAAISLLPAKEGQGPVLPAAKTVTILPAPPKLTRAPIHRIQNARRTSSPGGLLRPPPPLQAAGTQNSSQVVTPQSGVRTQSQGQVQAPPQQPLKRPADTPVPKVGSDPKKPNTDPKKSNTDLKKTVWRCKQCYFRDGDRAVVLTHVKGHYRQQQEAALAKGKNASSSSQEPKPQEPQQSVLKKAPFRCDTCPFVSASESLMQSHVSCHKQRDDVFFKCFYCPFYVATKEEVIQHMTVHQQSSKGESSSTSSVKSVASKSSSGSPSSSQAASNKTEAPLSNVQVKKEVESDQVTSTDPEEEVQAPNQAPAPPTLDFHNATEAPLCWVHRDGKLQKMLRCRYCPHVNLRRTNMLEHEKMHSKRSHLSSEEMSDNPTQYSPYPCTDCSYVCNNAGVLSSHMKVHFGSYPQAYAFYDPYKSEHLQMKEIVDRFSLKMKSDDSSQKSAPPKDPVDTGNENKLSGINVMSLLDPNQSLTDAVLAMKKKFNLELDGEPFAEPVEDSAESPPCSPLKQLNDGADPNASEMHEEKQLHFCVQCPARFLFRKELGIHSRFHNLYLIHKCDHCSYTARQRPHLQAHSKVHSDDYQDRTNALLKMYSVNKEYPKPRVVCVNLKAGVPGTLWIVVNTDFREAPPPTANFVCGKCPASFFKNDAYQAHLALHGSNNAHKCPICDYAVRTYGNLIKHVIAHGCRASVAKKILQGRMAVPESLRPPPSTETSNVVVPKEEPQSFDSEEQGDQSQSQSSRSNDVIDGEHEGRDDCSMDVDGRDESGVEKNTDDRDRESTASKSPQSSSFTSGCPDFVYPTYCRNGRVKVKRFKCQKCPSAFEKKDQYLVHVSLHGSKQKYKCTKCDYSVKFFANHIQHLRRHQISEDAKSKDDSEPQTAENEEFIPEDTENIPSPSPPSPTRSAKTTGGKGEKLSVADKQAIMVLQQRRAKRAAISRESLDKNYWCSHCPYSSVRRDQVESHMRRHIAVSGVRHAYVCDHCDYSVPIKHFLRDHSKLHFDVSKAPRPDAYMICDGLELWASSGFTGKNKSKGKVLIFQDKGANLATDRFLPPLSCEEDEDSNGSVEKIFVNPRTFESENVNEVGTKEAMDTSGEVENEEDGDSDSRRSEKSNDGAENEDGEEIAASASCSLSLTSENKASRSCSPQSVKSMEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -