Tpal006766.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
RREB1
Assembly
GCA_012932325.1
Location
NW:14980469-14992990[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0072 0.23 11.7 0.9 3 23 92 112 90 112 0.97
2 13 7e-05 0.0022 18.0 0.1 1 23 118 140 118 140 0.99
3 13 0.07 2.2 8.6 0.3 2 23 235 257 234 257 0.95
4 13 0.013 0.43 10.8 0.1 1 23 444 466 444 466 0.97
5 13 0.0019 0.061 13.5 1.0 1 23 474 496 474 496 0.99
6 13 0.028 0.9 9.8 2.8 1 23 502 525 502 525 0.97
7 13 0.27 8.6 6.7 5.8 1 23 867 890 867 890 0.95
8 13 0.0026 0.083 13.1 0.4 2 23 1094 1115 1093 1115 0.97
9 13 0.14 4.4 7.6 3.5 1 23 1121 1144 1121 1144 0.96
10 13 0.029 0.93 9.8 2.1 1 23 1211 1235 1211 1235 0.96
11 13 0.86 27 5.1 3.5 1 23 1379 1402 1379 1402 0.95
12 13 0.027 0.85 9.9 0.5 3 23 1457 1477 1455 1477 0.93
13 13 0.022 0.69 10.2 5.9 1 23 1483 1505 1483 1505 0.98

Sequence Information

Coding Sequence
ATGACCaccgccacgtcgccgcccccaccccctccggaCACGGAGcaggcgcagcaccgcgccggcgtggacgcggacggccccgccgccgccgccatggacgtcgacgtcgtcgacgaCCACACCGAGACCACCTCCCTCACAGACGTGTCCGCGCGCCTTGTGTGCGCGGTctgcgacggcgtgctcgccaccgaggccgccctggcctcgcacctccaggacctcggcCTGaaccacgccggcggcggcgacgaagTCCAaggcttcggctgccgcgtcTGCCGCCGCGTCTTCGACCACGCCGACACGCTCGACCGGCACGTGCTGACGCACCCCGGCGAGCAGGTGTTCAAGTGCCCGCTGTGCGGCCAGGCGCTGCGCACCAACGGGGGCCTGGCGAGGCACGCCCGCAGACACCTGGACGGCCACATGGACCTGCTCAGGCCTGACTTGGCCAACATGAGGGGCACCGCCACCAAGCGGCGCAAGGACCCCGACGACACGGACTACGAGGTGGAGGCCAAGCAGATGTCGCCGGCcagcgacggggacgccgccccggccgccctgcccgcggccgctctgcccgccgtgccgcgcttcACCTGCCCGGTGTGCCCGGCCTCCAACCCCTTCCGCGCGCCCTACCTGCCCGAGCTGGAGGCGCACCTGGAGCATAGCCACCGGGACTACAGCGTCTCGTGCGACCTGTGCGGCGGCACGTACCGCAGCGTGCGCGACCTCAACCTGCACGTGCACACGGCGCACCGGtcgggcggcaaggcgagccGCGCCCGCGACGTGGTGGGCTTCAAGGACCTCACCTTCGTGGACTTCAGCAGCCGCAAGTTCGCCCACATcgcgcgcgccgagtgcgagaagagcctgcaccgcgccgccagccgcctgcACCCCTTCCAGTGCGAGTGCGGGCTCGCGTTCCCGTGCGACTCTGCGCTAGCGATCCATCGACAGGCCTGCCCCAACACGGTGTACGTCGACTCCCCCGCCGACCTGTCCCACGCCGGCGTccacctcgacggcgtgcccgcgcaGTCGCCCAAGGGAGACTTCTTCGCCAAGCTGGACCTGCTGAACAAGgccaccagccccgccgccatggcccgcctggcgccgccggcctacCTGGACCGCGACCTGGCCGACATCCCCAGCATCCtgagcgcgagcgcggccagcggcgtggccatgggcacggccatgggccacagccacagcagcgagcacggcgaggagcGCGACGACCACGAGGAGCAGCAGGACGCGTTCGCCGCCGAGTTCCGGCGGAtgaagcagcgcggcgagttCCCCTGCCGCCTGTGCACCGAGGTGTTCCCCAACCTGCGCGCCCTCAAGGGCCACAACCGCGTGCACATGGGCCCCAGCGCGGACGGCTACCGCTGCAACATGTGCCCGCACTCCGCGCTGGACAAGGtggccctgcagcgccacaTGCGCACCCAcaacggcgcgcggccctacGAGTGCGCGCTCTGCCGCTTCGCCTTCACTACCAAAGCCAACTGCGAGCGCCACCTGCGCAACCGCCACGCCAAGTGCTCCCGCGACGAGGTCAAGAGCTCCATCATCTACCACCCGTCCGAGGACCCAGGCAACGACCCCGAGcttcagcagcagctgcagcagcacggcaagCTGGACGTGAAGCGGTCGCTGTTCGCCGAGCCCCTGCTggaggacggccgccgccacagcctGGACGTGGGCACCATGACGGcctccgaggacggcgacgaccagcaccgcgacgagcaggACGACCCCGTCGACGATGAGGTCGCCGAAGACGGGCGGCAGTCGCCGCTCGACCTCAGCATGGTCCTGGACCTGTCCAAGAAGCGGCCGCTCAGCCCCGTCGAGGTGGAcctggaggccgaggacgAGATCCTGGCGGACGAGGACATAGACGAGGTCGAGGAGCAGCCACAGGACCTGTCGCGGAAGGCCTCCAccgagtccgcggccgcccccgccacgcagctCCACGTCAACAACCAGTCAACCCCGCTGCAGTCGCCGGAGGCGGCGCTCCCCTTCCCGGGCCTCGGCTCGCTGTACGTGAACCCGTACcagctgggcgtggcggcggccaccggccAGAGCttgggccagggcctgggccagggcctgggccagggcctcgccccgggACTGCCGTTCCCGGCCTACTACCCCGGCCTGCTCCGCAGCCTGCAGTTCGGCCAGCTCGGTGGCGGCTTGGTGCTGGAGCCCAtgcgcctgctgcagcgcccgcCCTTCCTGCCGTCCGGCGTGCCCGGTGTGCCCGGCGACTCGACTCTGCccgtgcccctgcccctgccgcagGGCTTGACCGACGCGGCCAAGGACgagcccgcctgccccgccagccccaagTCGGAGCGCAGCATGTCTTCCATGTCGGCATCGGAGTGCCCGCAGCAGGGCCTGCGCGAGGGCCTGGggcccagcagcggcagcagcaccggcagcaaCGGCAGCAGCAAGCTGGTGATGAAGAACGGCGTGCTCATGCCCAAGCAGAAGCAGCGGCGGTACCGCACCGAGCGGCCCCACGTGTGCGAGCACTGCTCGGCGCGGTTCACGCTCTCCTCCAACCGCGAGCGCCACGTCAAGCACCAGCACCCGCAGTTCTGGAGCCagaggcaccgcggccccagcggcgtgccgcccacgccgccaaccacccccgcgccgcccacccccaTGGACGCCTCCACCCCGCTGCGGGCGCCGTCCGTGGACGCGGCCTTCATGCCGGCCGGTGGCAAGcaccacgacgaggacgacgaggacgagggtcTCGTTATCGACGAGGAGCGGCCGTCCAGCGaagaccaccaccacctcgacgacggcgtggaggGTGACGCCGAAGACGACATGCACCACGcgtccgccgccccctccacgcccgccgccggcgaggacCTGGCCAGCGTGTCCAAGCTGCTCAACAACGCCTCCATCCAGACGTTCCAGCAGTTCCTCCGCGAGGGCGACGAGCCCGTCGTCCCCAGCACCCCGTCCACCAGGGAGtccgcgcccgccggccacgccggccacgccgaggagggTCTCGGCAGCGAGGAGGACCTCGACGAGGAGGGCCTGGTGGCGGGCTCGCCCAGCGAGGGCAACAACTCGGGTAGTGAGCAGGACAAGTCCGAGTCCGAGAGCGCGGCCGCACCCATGAAGAAGAAGAGCGCCTACTCCATGGCGCCGAACCGGGTGAGCTGCCCGTACTGCTCGCGGAAGTTCCCCTGGACgtcctcgctgcgccgccacgtgCTCACGCACACGGGCCAGAAGCCCTACAAGTGCCTGTACTGCCCGCTGCTCTTCACCACCAAGAGCAACTGCGACCGCCACTTGGCCAGGAAGCACAGCAACAAGAAGGAcgccaacagcagcagcagcggcgtgaGCACGCTCAGCACGCCCAACAGCAGCACGACCAGCGTGTCGCCGGGCTcctcggcgggcagcggcTCCCCGCCGGAGGGGCTGCTGACGCTGACGCGGCCTTCGGCGctcagcccgcccggccagagcTACCCGCTGAGGAACGTCCCGGAGCGGCCGtaccgctgccgccactgccccagCTCCACCTTCGCCTCGCTGAGCAACCTCCGCAAGCACGTGGCCACCAAGCACACCGGCGCCTCGCTGGAGAGCTGCATCCTgcccagcgacgccgccgccaacgtgAGCGGCTACGAGAGCCACGGCAGCGTCAGCGACGTGGAGCCCGCCGAGGACAAGGAGCTCAAGGCCGAGCTGGAGATGAAGATCCCCGTGTTCTGCCCCACCGCCGTCCTGGACCAGCCGCTCAGCCTGTGCAAGGTGGAGAGAGGCGACCTGGACGCCAAGTTGGGCAAGAGCCTCAAGGAGGAGGCCGCCCTGAAcctgcgccggccgcccgaccTGGACAGGCTGGACCGGCTGGACAGAAGCGACATCATGAAGGAGGCCCACAACAGCCTCATGTCCTCACAGCCTATCTCTGCCCCGGTCGTGAGCATCCCGGAGGGGAACGCCCGGCCCACAGAGGCGTCGATGAACTTGTCGTCGTCAGAACTGCCTTTCAAGTGCCATCTCTGTGACGGGAGCTTCACAGAGCGACAGGAGTGCCTAGACCACATTAGACTGAACCACGCGTCCGAGTACGAGATCTTGCTGTCGAAGGGAGCATTGGAGTTGAACGTCAACACTTCACCTGAGGACAACAATGTCATGGAGGAAAACCACCATGCGGATGGAGAGAACATTGAGCACATTCGTGGCAAGTTCCCAGACTACGCCAACAGAAAGGTAATGTGTGCATTTTGTATGCGCCGCTTCTGGTCTGCTGAAGACCTCCGTCGCCACATGCGCACCCACACAGGAGAACGCCCTTTCTCCTGTGATGTGTGCCGTAGGCGTTTCACCCTGAAGCACAGCATGTTACGCCATCGAAAGAAGCACAGTGATAtctcaaacaacaacaacaacagtttAAGTACTCCATTTGTGAATTCAACGGGTCCTGAGGATCTCTCACCCTCTGCAACCAGTGGCGAGGAGGAGGGTTATCATGTGAACATGACAAACCACAACAATAATAATATTAATGTGGCCGATGTGAGCAAAATGTACATGGCAATATGTGACAACCGTTTGAACCTGAAGCGCAGTTTTCGTAGAAATAACTTTCGTAGAAAAGAGGAGGAAAATAGTGGTCTCATAAGTAATCTCTTGGGAATTGGTGACCCCTCCATCATTGATAAAGTACTGCTCACTAAGTCGGCAGATGATGCTGAAAAACTTCTTGGCGTTTACAAGAACGGGAGCGTAAGTAGCAATGGGCGTACTTAA
Protein Sequence
MTTATSPPPPPPDTEQAQHRAGVDADGPAAAAMDVDVVDDHTETTSLTDVSARLVCAVCDGVLATEAALASHLQDLGLNHAGGGDEVQGFGCRVCRRVFDHADTLDRHVLTHPGEQVFKCPLCGQALRTNGGLARHARRHLDGHMDLLRPDLANMRGTATKRRKDPDDTDYEVEAKQMSPASDGDAAPAALPAAALPAVPRFTCPVCPASNPFRAPYLPELEAHLEHSHRDYSVSCDLCGGTYRSVRDLNLHVHTAHRSGGKASRARDVVGFKDLTFVDFSSRKFAHIARAECEKSLHRAASRLHPFQCECGLAFPCDSALAIHRQACPNTVYVDSPADLSHAGVHLDGVPAQSPKGDFFAKLDLLNKATSPAAMARLAPPAYLDRDLADIPSILSASAASGVAMGTAMGHSHSSEHGEERDDHEEQQDAFAAEFRRMKQRGEFPCRLCTEVFPNLRALKGHNRVHMGPSADGYRCNMCPHSALDKVALQRHMRTHNGARPYECALCRFAFTTKANCERHLRNRHAKCSRDEVKSSIIYHPSEDPGNDPELQQQLQQHGKLDVKRSLFAEPLLEDGRRHSLDVGTMTASEDGDDQHRDEQDDPVDDEVAEDGRQSPLDLSMVLDLSKKRPLSPVEVDLEAEDEILADEDIDEVEEQPQDLSRKASTESAAAPATQLHVNNQSTPLQSPEAALPFPGLGSLYVNPYQLGVAAATGQSLGQGLGQGLGQGLAPGLPFPAYYPGLLRSLQFGQLGGGLVLEPMRLLQRPPFLPSGVPGVPGDSTLPVPLPLPQGLTDAAKDEPACPASPKSERSMSSMSASECPQQGLREGLGPSSGSSTGSNGSSKLVMKNGVLMPKQKQRRYRTERPHVCEHCSARFTLSSNRERHVKHQHPQFWSQRHRGPSGVPPTPPTTPAPPTPMDASTPLRAPSVDAAFMPAGGKHHDEDDEDEGLVIDEERPSSEDHHHLDDGVEGDAEDDMHHASAAPSTPAAGEDLASVSKLLNNASIQTFQQFLREGDEPVVPSTPSTRESAPAGHAGHAEEGLGSEEDLDEEGLVAGSPSEGNNSGSEQDKSESESAAAPMKKKSAYSMAPNRVSCPYCSRKFPWTSSLRRHVLTHTGQKPYKCLYCPLLFTTKSNCDRHLARKHSNKKDANSSSSGVSTLSTPNSSTTSVSPGSSAGSGSPPEGLLTLTRPSALSPPGQSYPLRNVPERPYRCRHCPSSTFASLSNLRKHVATKHTGASLESCILPSDAAANVSGYESHGSVSDVEPAEDKELKAELEMKIPVFCPTAVLDQPLSLCKVERGDLDAKLGKSLKEEAALNLRRPPDLDRLDRLDRSDIMKEAHNSLMSSQPISAPVVSIPEGNARPTEASMNLSSSELPFKCHLCDGSFTERQECLDHIRLNHASEYEILLSKGALELNVNTSPEDNNVMEENHHADGENIEHIRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCRRRFTLKHSMLRHRKKHSDISNNNNNSLSTPFVNSTGPEDLSPSATSGEEEGYHVNMTNHNNNNINVADVSKMYMAICDNRLNLKRSFRRNNFRRKEEENSGLISNLLGIGDPSIIDKVLLTKSADDAEKLLGVYKNGSVSSNGRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-