Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:4807636-4812936[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.4 46 4.4 0.8 2 23 783 805 782 805 0.86

2 12 0.0015 0.047 13.8 2.1 1 20 836 855 836 857 0.95

3 12 1.6 50 4.3 2.7 2 23 874 895 874 895 0.97

4 12 0.00084 0.027 14.6 0.1 3 23 903 923 902 923 0.98

5 12 0.017 0.53 10.5 5.0 1 23 932 954 932 954 0.99

6 12 0.00051 0.016 15.3 0.2 1 23 960 982 960 982 0.95

7 12 0.005 0.16 12.2 4.1 2 23 988 1009 987 1009 0.97

8 12 0.022 0.71 10.1 4.0 1 23 1072 1094 1072 1094 0.84

9 12 0.081 2.6 8.4 0.2 1 23 1100 1122 1100 1122 0.97

10 12 0.00013 0.0042 17.2 1.2 1 23 1128 1150 1128 1150 0.98

11 12 8.6e-06 0.00027 20.9 2.9 1 23 1157 1179 1157 1179 0.99

12 12 0.14 4.6 7.6 2.3 2 23 1186 1208 1185 1208 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.4	46	4.4	0.8	2	23	783	805	782	805	0.86
2	12	0.0015	0.047	13.8	2.1	1	20	836	855	836	857	0.95
3	12	1.6	50	4.3	2.7	2	23	874	895	874	895	0.97
4	12	0.00084	0.027	14.6	0.1	3	23	903	923	902	923	0.98
5	12	0.017	0.53	10.5	5.0	1	23	932	954	932	954	0.99
6	12	0.00051	0.016	15.3	0.2	1	23	960	982	960	982	0.95
7	12	0.005	0.16	12.2	4.1	2	23	988	1009	987	1009	0.97
8	12	0.022	0.71	10.1	4.0	1	23	1072	1094	1072	1094	0.84
9	12	0.081	2.6	8.4	0.2	1	23	1100	1122	1100	1122	0.97
10	12	0.00013	0.0042	17.2	1.2	1	23	1128	1150	1128	1150	0.98
11	12	8.6e-06	0.00027	20.9	2.9	1	23	1157	1179	1157	1179	0.99
12	12	0.14	4.6	7.6	2.3	2	23	1186	1208	1185	1208	0.96

Sequence Information

Coding Sequence: ATGCCAACCTGTTCGGTTCCTCATTGCCTGAATGCGACGGGCAAGGATCCCCGCATCACTCTGCACCCGTTTCCTCATGAAACTCCATTGTTTTTGAAGAAATGGATTGAAAACATAGGTAGACCTAATTGGCGTCCTGGACATCGTAGTCTTGTTTGTTCCGAGCACTTTGAGAAAGATGATTTTGACCGACAAGGCCGCTTGCGTATAGGCAGCTTCCCAGTCAAATTTCCAGAACCTCCATCACGCAAGAAACCTAAGCTTGACTCAAGCACAAATACTGCTGATAAATCATTAAAAGTCCCAACTCAGCAAGAAATTCTACCTGAAGCTACAGTTCTATTACCAGTACTGAGCCCTAGTGTTATTAAAAAAGCATTAGGTAGAGATAGAGATCCATCACAGTCTGTTATTTCTGTTGAAAATGATTCATCTCTTGCTGAAGTAGCTTCAGAATGCAGGACTAACACTGTTCCCCAGGAAAACATTTCTAATGAAAACAGGATTAAAATGAAACTTGACCAGAACAGTTCTTCTGGCACCAAACTGACTGAAGTATCTCTTAAAAGAAAAGTACTGGAAGAGTCACAGCCTACAGCATCTATTAATCCCGGTCTAGTGATATCTGCCTATTCTCTGCGAGCTTGTCGAGTTTGCCGCACAGCTCATAATAACAATGTCAATGTCTTTGGACAGGAAGGAAAAGATTTGTCCTTATTAGAATTACTGAAAAAATGTCATATTAAGGTGTCTGAATCGCAATCTTTGCCTCTCTATGTGTGTAGGCAATGTATTCCTCGTTTGAAAACAACTTATGATTTACTGACTACATGGGAAAAGACAAATCAGGGCTCTGCTGTCAATGATGCCAAAAATTCAGAAGagccggacccccctgtcatTCATTCTAAGCCAACACAACTTAAGCATGCCAGTCGAGGGAACCGTAGAGTTCTGCTCTTGGAAATGTGTCTAAGAGAAGGTATTCCAGTCAAAGATATGATTGGTCAAGCCATTCAAGAGCTAACACTGAGGTTAAAACCTAAGGCATCAAGGGAATCAAAACCCGAAGGAAGAATAATGTTTCTTGATTTGCAAGGTGGCACAGAAGCATTCCCTGAGCAAATGAAAAAGGCTATTTCTATGTTGTTTCCAAGTGCtgaaaagaaacaaacttCTGTTGCTCAAGAAACCTCACCAACCAAAGGGGCTCAAGGAGTCCAGACTAATGCTGCAGCTAAGAAAGGTAGTTCACCACTATCTACTGCAAAGCAGGTCCTAAATCTCCTAGCCGCCAACACAACTCCAGCTAGTTCAAAGCAGGTTTTCAAGATTGGAGGTTCAGCCTCCATTTTGAAGAAGGTTGAGGCTAAGACAGCTCATCAAGCTTCAGTGCCAACCACCTTAAGACCATTAGCTGTGAAGCctgtggcgggggtggggtcaGTTTCTGGTATCTCTGGTCAGAATATCGTATTTCAGACTACTCCAGTGTTTTCTTCAGGACCCCTAACAGTTCTGACCAGTAGTCCTGGAGCATCACCTGCCGTAACAATTGCTGCAACTAAATCGCTTCCCAAACTCCTTCCTGCACCTTCATTGAGTTTTTTGAATGTCCAGCCAAATTCAGCTACTTTGGACAAAAGTAAAGCAATGGAGCAGGCAGACTCAGATGATGATATTCACTGTTATGAAGATGCTCCTTCAGTGTTTGAGCCAAGCGACCAAATTGAAACAAGCCCAGTTCCACCATTGGTGCCCATCCTCCCGACATTAGTGCCTTTGAAGCAAGTCTCGACAGAAGTTACTTCAAGTCCTGCCATTAATATTTCTAAAATGAGGGATTCGGTTGTATCAAAAATTAACAAAGCACCAAACCAAATTAAGTTGGGTGATAAAATTGTAGGGATTGTTCTTCGAAACTCTGACAGTCAAGCTGACATCCATCAAAAGCTGCAAGCAACATTTGCAGCTAAGGCACTACCCTCTGAAGGCAACAAACCCAAGGAAATGGTCATCCCTCCTAGAGATGGTGTTGCTGTTGGAGTGGACAACATATCCCCTCCCGAGCTAGAAGAAAGGAAGAGATTGAAACCTAAGGTTTTGGATGTGCCCTCTGCTGTGGACTCACCGACTGAATACTCTGACAGGCGCAACGCGCGTAGGCTATCCCTTGGCTACATGTGGCGAAAAACTAGTTATCTTGTTAGTTCCCTTCAGAAGTTGTTTACTTGGGATGTTGGTTCAAATGAAAAAGCGATGCCGGTACTCACTTGTCGTGTTTGCAAATATACCCCTATGTGCAGGCAAGATGTAGAAATGCATCTGGCATCTCATCCTGAATTACAATGTCCAATTTGCTCAAAGTATTTCTTAAAAGATTCCAAAGTGCATGAGCACATGACTGTAATTCATGGTACACCTCAACCAGCTTCATTTGTTCCGAAGAAAAAACCACCTATTTCATGGCGAGTCAATCCTGTCAAGAGGCTACCCGTCAGACAGTACCAATGCTCTCGGTGCTTCAGAAGATTTAAATTTAAGGAGTCCCTCAAACGCCATGTGACTGTCTGTAAGGATAAGTCTGGCTCAGCAGAAGGACCTCCAGTAGGTCCACGAACTTGTACTGTCTGCTGTAGAACATTCCCTTCTGAAGAGCTAATGGTGGAACACATGCATAGTCATGTAAAGAGAACTTCTTGGCTCTGTGACATTTGTGGTTTAGTATTGAAATCTGCATCAAATTACCGATCTCATATAGCACGCCATGATGAACTAGCACATGAGTACAATTATCAGTGCTCAACCTGTAAAAAACGTTTCAAACTTAAAAACAGATACCAAGAACATGTGAAGAAGCACGAAACGCCCCAGGAGTACATTTGCTCATCCTGTGGCAAAACCTTCCGCTCCATAGGTGGATTGCGTCAGCATGAAATTTTGCATGGGGAACGAAAGCTTCAGTGCAAATTTTGCCCAAGTCGGTTTCATAGGCCAGATCATCTTAGAATTCATGAGAGAAGCCACACCAAGCCAAAAACTCCAAGGACGGCTGAGGGAAGGAATACTTCCGGAAAAGCACGCATGTTCACTTGTAGGTTCTGTTTGGCTAATACGAAAACTGTTGTGAAGTTTCCCACCATGAGGGAGCTTATGCGACATTATAGTGACGATCATGCCTATGAGAGGGGCAGCATCCCGGCAGCAAAGAAGTTTGAGTGTGATCGTTGCAACAAAGCTTTTCTCAACTCAACACTGTTGCGACACCACCACATGTGGCATGCAGGGCTTCGTCCATACAACTGCTCGGTGTGTGGGGCTGGTTTCATGGTTAAAGAAAGGATGAGGAACCATGAACTGACCCATACTAATGAGCGTCCTTACAAGTGCCAAGTTTGTGATAAAGGTTTCAGGAGTAGAAATGTTCTGAAGCAGCACAAACTGATCCATAATGACCCCAGCCAATTTTATAAATGCCAATTTTGTGAGAAGAAATTCTCTCGCATCGATAATCTGCGGACCCATACAAGGGTTCATACTGGAGAGAAGCCCTGGAAATGCTTGCTTTGCAATCGTCAGTTCCGATTGCGATCTGACTGTACAAAGCACATCCAAATTGGCCATCAAGTTCCACCACAACAAGTAGAAGCCAACATGCAAACATTGATGGACCCTCTGAGTGCAGTGGAGTCTCAATCGGCCATAGCCGCCGTCGCTGGGATTTCGAGAGTCCAAGACATGGAGCTCCTCATTGAAGACGTCGACATCGATGCTTGTGACGACGAAGATTCTCTGGAGTGA
Protein Sequence: MPTCSVPHCLNATGKDPRITLHPFPHETPLFLKKWIENIGRPNWRPGHRSLVCSEHFEKDDFDRQGRLRIGSFPVKFPEPPSRKKPKLDSSTNTADKSLKVPTQQEILPEATVLLPVLSPSVIKKALGRDRDPSQSVISVENDSSLAEVASECRTNTVPQENISNENRIKMKLDQNSSSGTKLTEVSLKRKVLEESQPTASINPGLVISAYSLRACRVCRTAHNNNVNVFGQEGKDLSLLELLKKCHIKVSESQSLPLYVCRQCIPRLKTTYDLLTTWEKTNQGSAVNDAKNSEEPDPPVIHSKPTQLKHASRGNRRVLLLEMCLREGIPVKDMIGQAIQELTLRLKPKASRESKPEGRIMFLDLQGGTEAFPEQMKKAISMLFPSAEKKQTSVAQETSPTKGAQGVQTNAAAKKGSSPLSTAKQVLNLLAANTTPASSKQVFKIGGSASILKKVEAKTAHQASVPTTLRPLAVKPVAGVGSVSGISGQNIVFQTTPVFSSGPLTVLTSSPGASPAVTIAATKSLPKLLPAPSLSFLNVQPNSATLDKSKAMEQADSDDDIHCYEDAPSVFEPSDQIETSPVPPLVPILPTLVPLKQVSTEVTSSPAINISKMRDSVVSKINKAPNQIKLGDKIVGIVLRNSDSQADIHQKLQATFAAKALPSEGNKPKEMVIPPRDGVAVGVDNISPPELEERKRLKPKVLDVPSAVDSPTEYSDRRNARRLSLGYMWRKTSYLVSSLQKLFTWDVGSNEKAMPVLTCRVCKYTPMCRQDVEMHLASHPELQCPICSKYFLKDSKVHEHMTVIHGTPQPASFVPKKKPPISWRVNPVKRLPVRQYQCSRCFRRFKFKESLKRHVTVCKDKSGSAEGPPVGPRTCTVCCRTFPSEELMVEHMHSHVKRTSWLCDICGLVLKSASNYRSHIARHDELAHEYNYQCSTCKKRFKLKNRYQEHVKKHETPQEYICSSCGKTFRSIGGLRQHEILHGERKLQCKFCPSRFHRPDHLRIHERSHTKPKTPRTAEGRNTSGKARMFTCRFCLANTKTVVKFPTMRELMRHYSDDHAYERGSIPAAKKFECDRCNKAFLNSTLLRHHHMWHAGLRPYNCSVCGAGFMVKERMRNHELTHTNERPYKCQVCDKGFRSRNVLKQHKLIHNDPSQFYKCQFCEKKFSRIDNLRTHTRVHTGEKPWKCLLCNRQFRLRSDCTKHIQIGHQVPPQQVEANMQTLMDPLSAVESQSAIAAVAGISRVQDMELLIEDVDIDACDDEDSLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -