Tpal012233.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:10652660-10658026[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.54 17 5.8 0.4 2 23 673 694 672 694 0.96 2 12 0.0036 0.11 12.6 0.5 2 20 797 815 796 820 0.92 3 12 5e-05 0.0016 18.5 4.2 1 23 853 875 853 875 0.98 4 12 0.0037 0.12 12.6 1.5 1 23 880 902 880 902 0.96 5 12 1.9e-05 0.0006 19.8 4.0 1 23 907 929 907 929 0.96 6 12 1.2 39 4.7 1.4 2 23 950 971 950 971 0.88 7 12 0.05 1.6 9.0 0.3 1 23 979 1002 979 1002 0.97 8 12 0.05 1.6 9.0 0.7 3 23 1009 1029 1008 1029 0.98 9 12 0.0063 0.2 11.9 0.3 1 23 1035 1058 1035 1058 0.97 10 12 0.00067 0.021 14.9 0.3 1 23 1064 1086 1064 1086 0.95 11 12 1.3e-05 0.00042 20.3 0.3 2 23 1094 1115 1093 1115 0.97 12 12 0.00062 0.02 15.0 0.2 1 23 1121 1144 1121 1144 0.97
Sequence Information
- Coding Sequence
- atgacgaaaTGTTCAGCTCCAAACTGCATCAATAGTCAGAAGACTGCAGAATTCTACTTCTACGAATTTCCTGGAGACTCTCACCTTCGAAGTCAATGGATTGCCAATATTGGAAGAGCGAACTGGACCCCTGGAAGAAGAAGTATGATATGTTCTGCCCATTTCGAAAAGACTCAATTTAGCACTAAAGTGCATTCACAACTAATAGAGGGAGCAGTTCCCACAATATTTCAGACTTCTAGAAAGAAAAGGGGTGCTCAAATTCTGAAGCACAACAGCTTTGGCTCCAAGAGAAATTCTGAATTAGGTTCAGATGACATTGGTAAAGAGGATAGGAATAAGGGACTACGACCCCACACTGGGTCAGAAAAGAATAAGGATGTGGAAAGTAGCATAAAGAACAAGCCAAGCAGTTATGTACTTGAAACTGGAAAAGTTGTCAATGAGATGGTTCTTATCGATGGAACTTACATGTTGGAAAACTGTGAGATTGTCCGTGACAAACCAAGTTCAAATTTAATGAGTTGCATTTCTCCCAGAATGGAAGATGAAATATCATCTTCAAGCAGCATCATCAGAAATTCTCTAAGCAACTGTTTTCTACAGACAGAAAATCCCCTTGTCTTAGGAGAGGGAAATTCTGAGGCTGAAGGAAATGTAATAATTGTTGAGACTAATCCCGAATTAGTTTTAGTGAACGAATCTTATCAATCCCAGCCTGATAGTGAGATTATCCCTCAGCAACTCCCTAAAGACCCCATTGAAATTAAAAAGCCACCCCTGAATTTGTCAGAAATAGCAACTCCATTTTCAACAGCTTTCTCACCCTCTTGTGATTCTGATGCATTTGTGGACCTAAAAACAGCAATACAGGCACATTGTGGGCCGCCTGTGAAAAGACATAAATTTCATGAGGAAGATACTGGGTTTCCGATGTTTGATAGACATCAAATAGCCTCTAATACTGtggaaaaaagtacagaactAGATTTGGAGATGTCAGATACTTCTCTTCAAAAAGGTGTAATAGACCTCCCAGTATCATTATCATACCATGAATGGGGGAAGCATGCAAGGAAAAATGGTCATGTTGTTTCCATGTGGCAAAATGGTACATTTATGTGCCGTCTGTGTGGGGTAGCTAGCAACAAAACAGTTAACATGTTTAGCTCTGAGGCCAAGGACATAAAGCTGCTGGAGCGAATCACTTCAATTCTTCCCATAATGATTGTTCAAAGTGATGATCTTCCACAAAATGTTTGTTCAAAGTGTCTGAGTCGCTTGGATATGTGTTCAGAGCTTATGGTAACATCTTTTAACACTCACAGACAACTTGCATCTGTTATGGGACAGgatttggACCAAGCATCACAGTTGACCATATTCTTTCATGAAAGAAAGAAGAACTCAATTACCAGTCCAGACCACAAACGCCATCTTCTACTCATGGAAATATACAGCAAGGAAGGCAAACCTGTAGAAGAATATCTTTCTATTGCATTAGAGGATTTACAGTTGCGACTGCACCCCAAGTCACAGAACAGTGGAGAACTTAAGTGTAGTTTGGTGCTAGCCTCCATATCAAATAACTCCATGGTATCAGAACTAGAACAAGCAAAAACAGCAGCTGAAGCACTTGTCTCCATGGATGTGATACAAAATGAAAGAAGAGAACAAAGTCCATCCAGATTGATCCAGGAGGAGACCGAAAACGTATTTCTCAACCTTGATGATGTCCCTTTTGAGAAGGATTCAAATGAAACATCAGCTAATGCATCATTAAATGGCCTAAAAGTAATCGAATCCTTGTCATTGACAGAGCCACCTGATGGTTTTGAGGCTGAACCAGGAGAGGACCAGGTTATGCCCGTCACAGATGATGTCAGTCCTAGTGACTATTTTTCAACTGGAATAAGGAATCCAAAGTTTCAAAGAGCTTGGAAGGAGTGTGGAGATGCTTTCACAACTTTGCAAAATTTTGTTTACTGGAAGTTGGAAGAAAGTGAAGTGAAGCTCACATGTAGAATGTGTGAACATGTTTTTGAAGGGACCGGTCTCATACAAAATCATATTAAAGAGCACTTGGGTCCATCAGTTCATTCTGAACATGAAATAGACAAAGGTGATCAAAGCACCAGTGAAAAGGAAGGGAAGCTTGAACATGACACAGACACATCAAGATCATGGCCCAAGAGGCAATTCCGCCCATGGTTTCAGTGTTCATTTTGTAGTGAACACCTGCAGTCCAAACAGATTTTAATGCAGCACTTAGAATCTTACCATGCTGCAAATACTAAATGTGAAAGTTGTGGACATGATGCCTCCGATGTGTGTGCAGCCATTTTTCATCGACAAACATGTGCTAAAATTAGAAAGTTGAGAGAGTGGGAATGCCACAAGTGTTTGGAAATATTCTCAACAGAAGAAGAATTAAGGAAGCATCAAGTCCTTAGCGATCATGCTGAAATTTGTGATGATGGTGCTAAAATTTTTTCTCAGAAAGCAAGACCTCAACAACTGAAAAGGTCACACTTTCTCCCAGATTTGAAGTACATCCATCAATGTCCGCACTGCCCAAAGCAATATATCAATTCTTCAAGGCTGAAGGAGCACATGCAAAAACATGAAGAGAAAAAATACATGTGTAAAGTTTGTGGCAAGCTTTTCAGCACCAAGCAGATTCTTCGGCAACATGAGTTTACACACGGTGACCCACAATATCTATGTTCTCTCTGTTCCCGTACATTTTATCGGAAAAGCCACCTATTGAAGCATATGAATGTACACAATCCTGATAATTCTAGGGCCAGCCGAGCTGGACCTCAACCACATAGAGATGGCCTCAACCGCTGCAGGGAATgcaaaaatgtttttgagcAAAAGGAGTTACTCTCTCACTACAAATCATCACACCCTCACATTCAACTTCTAAATTATACTTGTGAAATTTGCAAAGAAGAAAACACATCTTATGCAGAACTTTTTCAACATCAGCGGGAGGTTCATAAAACTGGTGTCAAAGATTGTCCATTTTGTGAGAAAACAATTGACAGTTCAACTCAGATGAAGTATCATCTCATGAAACATGAAGGCATGTATCCATACAACTGCCCAATGTGCAATAATGGATATACAGCTAATAGTGTCCTGCAGGACCATATCAGGCGCAAGCACACTGGTGAAAAACCATTTGAGTGCCAACAGTGCTCAAAACGTTTTCCAACTAATGGTGCTCTAGCTCAACACAGTACGGTGCACTCTTTACCTCACCAGCTTCTGCCCTGCCCAGTCTGTAACATTGGCTTTAAACGGAAGGCCCATCTAGATGTACATTTAAGAACTCATACTGGTGAAAAACCATATCCATGTCCTATATGTGACCGTCCATTCCGCCAGAGACCAGACTGTGTGAAACATGTGCGTGTTATCCATGGAGAGGATCCAAGTAAATACGAGTTTCGTTTCCATCCAAACATGGCAATCACCTTCCCTCAAGTAGTGTCAGTCTCAGACATGGAATTAGTTCTGGAGGGGGAAGACCTTATGCAAGCATCTCTTGAAACAAATTAG
- Protein Sequence
- MTKCSAPNCINSQKTAEFYFYEFPGDSHLRSQWIANIGRANWTPGRRSMICSAHFEKTQFSTKVHSQLIEGAVPTIFQTSRKKRGAQILKHNSFGSKRNSELGSDDIGKEDRNKGLRPHTGSEKNKDVESSIKNKPSSYVLETGKVVNEMVLIDGTYMLENCEIVRDKPSSNLMSCISPRMEDEISSSSSIIRNSLSNCFLQTENPLVLGEGNSEAEGNVIIVETNPELVLVNESYQSQPDSEIIPQQLPKDPIEIKKPPLNLSEIATPFSTAFSPSCDSDAFVDLKTAIQAHCGPPVKRHKFHEEDTGFPMFDRHQIASNTVEKSTELDLEMSDTSLQKGVIDLPVSLSYHEWGKHARKNGHVVSMWQNGTFMCRLCGVASNKTVNMFSSEAKDIKLLERITSILPIMIVQSDDLPQNVCSKCLSRLDMCSELMVTSFNTHRQLASVMGQDLDQASQLTIFFHERKKNSITSPDHKRHLLLMEIYSKEGKPVEEYLSIALEDLQLRLHPKSQNSGELKCSLVLASISNNSMVSELEQAKTAAEALVSMDVIQNERREQSPSRLIQEETENVFLNLDDVPFEKDSNETSANASLNGLKVIESLSLTEPPDGFEAEPGEDQVMPVTDDVSPSDYFSTGIRNPKFQRAWKECGDAFTTLQNFVYWKLEESEVKLTCRMCEHVFEGTGLIQNHIKEHLGPSVHSEHEIDKGDQSTSEKEGKLEHDTDTSRSWPKRQFRPWFQCSFCSEHLQSKQILMQHLESYHAANTKCESCGHDASDVCAAIFHRQTCAKIRKLREWECHKCLEIFSTEEELRKHQVLSDHAEICDDGAKIFSQKARPQQLKRSHFLPDLKYIHQCPHCPKQYINSSRLKEHMQKHEEKKYMCKVCGKLFSTKQILRQHEFTHGDPQYLCSLCSRTFYRKSHLLKHMNVHNPDNSRASRAGPQPHRDGLNRCRECKNVFEQKELLSHYKSSHPHIQLLNYTCEICKEENTSYAELFQHQREVHKTGVKDCPFCEKTIDSSTQMKYHLMKHEGMYPYNCPMCNNGYTANSVLQDHIRRKHTGEKPFECQQCSKRFPTNGALAQHSTVHSLPHQLLPCPVCNIGFKRKAHLDVHLRTHTGEKPYPCPICDRPFRQRPDCVKHVRVIHGEDPSKYEFRFHPNMAITFPQVVSVSDMELVLEGEDLMQASLETN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01434999;
- 90% Identity
- iTF_01434999;
- 80% Identity
- iTF_01434999;