Tpal007276.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:3117412-3122632[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.6 2.4e+02 2.2 4.8 3 23 110 131 109 131 0.90 2 16 1.3 42 4.5 3.5 2 23 138 160 138 161 0.94 3 16 0.2 6.3 7.1 0.5 2 23 168 189 167 189 0.96 4 16 4.8 1.5e+02 2.8 0.5 2 21 194 213 193 214 0.92 5 16 0.9 29 5.1 5.3 3 23 224 244 222 244 0.94 6 16 0.0023 0.073 13.2 1.9 2 23 354 375 353 375 0.97 7 16 0.0004 0.013 15.6 5.4 1 23 379 401 379 401 0.98 8 16 0.11 3.6 7.9 4.4 1 23 412 434 412 434 0.98 9 16 0.0033 0.1 12.8 0.3 3 19 442 458 440 460 0.95 10 16 9.5 3e+02 1.8 5.2 1 21 469 489 469 492 0.91 11 16 0.3 9.7 6.6 1.3 1 23 498 521 498 521 0.95 12 16 2.6e-05 0.00082 19.4 0.6 1 23 984 1006 984 1006 0.97 13 16 1.2e-05 0.00038 20.4 8.2 1 23 1012 1034 1012 1034 0.97 14 16 0.00013 0.004 17.2 1.5 1 23 1040 1062 1040 1062 0.97 15 16 7.3e-06 0.00023 21.1 0.6 1 23 1068 1090 1068 1090 0.97 16 16 1.7e-05 0.00053 20.0 0.5 2 23 1097 1118 1097 1118 0.97
Sequence Information
- Coding Sequence
- ATGAACTCAATCAAGAACTGTGATAGTAACCCAAGTGAAAACTCTTCCTGCTCTTCTAATGAACGAGCAAAAATCGTGTTTACGATACGAGATGGGAGCCTCCTTGTCACTTCCAAAAACGACGTGGTATCCAAGAGTGCGCTCACTGGTTTTCAATGTCTGCCGTTTAAAAATTCTAAATCAAAAGAGGAAGGTGAAGGTGAAATTTATATTGAAATAATTCGAGATGATGTCGAACAATATGAAGAATATCCTATCAACAACATCTCATCATCATATGGAGCGTTTTGGAAGGGAGATTTTGAATCGTGTATTGACAGACGCACATGCATAGAGTGCAAACATGTTTTGTTTACACCTCATCAACTCCTGCATCATATGCAGAACACACATAATATTCAAAATCCCAATGAGTGCTTTGTCTGCCATAAACTTTTTTCTAATGGTTCTGAGAGCAATAACCACATGAAACAAGTTCACCACTTTGAGAGACCTGATGTCACCTGTGAAGCATGCTTTAAAGTATTTGATAGTGAATCTGATAAAAACATTCACAGAACCCGTCATAGTGAAAGATTAAATTGCAAATGGTGTTCTGAGCCGTTTCCTTGCGAATACCTTTTAAACTATCATCTTCGAAACTGCTCACTTCGTCGAATCGACCTAGATTGTCATATCTGTGGCTGCCAATTCAGAAGCAGCCATATATTACAGCTGCATAGTCTGAGACATAATCGTAACTCTTGTGAACTTTGTCAGTACAGTCCACTAAATGTAGCTGATGCACTGGGTGAGGATGCTGCTGTTTCATTAGTAAAACATTTGAAAAATTGTCATACCCAGGAAGAAATTGATAGTATTTTGAAGAAGTTAAAAATACAGGATGAGGAAGAAGAGACCTTAGATAAGCTTTTCATGAGTcaaattgaagaaaatttaAACCAACTAAGTGATTCTATTCCTCAAAACTGTGCTGACGATCCTCAGAAGGAACAAAGTTGGGAAATATCCCTTGACAACCAACAAGAAATAATTTCTAGACATGCTGAAGCATCACTGCAATGCACTGAATGCCACAAAACATTTGGAAGCAAAGAAGAAACTGTGAAACATGAGTTGACTCACCAAACCCCATTTTCTTGTAGTGTATGTTCTTTAAAATTTTCACACCGCAGAGGCTTCAAAAAGCACATGCGTTCACATGGTATTCTTGTGAAACCCAGTTCTGTAAGATACACTTGTAGACATTGCTCTGTGAATTGTGCAACCTTGTCTGCACTTCATACACACCTCCTTATTCATACTGATGAAAAGCCACACCTCTGTGAAAAATGTGGCTTAAAATTCAGACGGCCTAATGCTCTCAAAGCTCATGATCTTGCTGTCCACAAGTCAAGGGTCTTGCATCACTGCTCTCAATGTGACACCAAATCTCTTTCAAAATCTTCTTTACTTCGTCATATTCAGTGTGTGCATGGAGGAGTGCGACGTTTTATTTGTGGGCTATGTGGTAATCGTTGTCTGCAAAACCAAGGTTTGAGACGACATCTGAAGAGTGAGCACAATTTAGAGTTACCTCCAATGGAAAGTTTGTGCAAGAAATCGAGTATGGAGGTTCATGTCATTCCACCACCTCAAAACCTGTCCCCAAACAATCCCATTGCGGAGATATTGAAGCTCGCTATCAGGGATGAGAAATCAAAATTGGAAGCACTAAAAAAACTGCCCACTTCAGAAGAAACTCCAAATAATGAGAGTCCTAAATTGTTGTGTTCAGAAAGTGTCATTGATGGACAGCCATTGAACATTCTTGGTGATGTTGCGTCTAAAGCTGCTCCCCTAGAACAAGCGAGTGTCATACCTGAATTTCTCCAGCCAAAATCTCAGGAAGCTACTAAGTTTTTATGTGCTGAATGTCAACACTGTTCTGATAGTTTGAATGATCTCTCTCTTCATTTGACTCGATGCCAACAGGGGAGGACTGTATTTGCTGAACAGGATAGCAATGAAGTATTAGTGGCCAAACCTCCTGTTGTCTATGCTCTGGCTTCTTCACTTGCAAAACATTCCAATGAAGTTTCTAGTGGAATTCCCTACCAGTTGTGTTTTGTTCCTCCCATCAATGTGGGCTCCTCTACACTGGGACCTGTATCTGTATGTAACAATAGTTCAGAACAGACTGTTGTACCATCAATTAATGTCAGTACATCTGTGTCATTACCCCAGGCATCTAGAAACTTACTAGCAACCAGTATTTCTTCAACATCTCTAAGTGATATTAGCAAAAATAATGTGGATAATAATATGGAATCAACAGAAAATTTAGTGCCTGTAACAGAATTTAATGGGGGATCAAGACTGCCAATAGATATTATGTCACTGAATGTTTTAGATACTTCCAACACATCTCAGTTGGAGTTTTTAGACGCTTCAAATTTTATATTTCAAGAAGACTTTTTAATCAGAGAAGAAACATGCAAAATATATGACCTAAATGAGCCATCTGCATCCTTTACTACATCAAATGCTGTTTCATTGAATGACGGTCGTGTGgAGAGTTTAAAGGAACAATCTTCCCCCTATAATTGCCCAAAAACTATGTTATTGGGTGCTGATGGAATGAAAGTTAGTCAGTTGTTGTCGTCTGGTCTAGAGGTGGTCTCACCAAATTTGCCTGACAATCCCAAAGCCTTAAATGATTCTGCTTCTTGTTTTCTTGAGAGCACACCACCCGAATTGGTTTCATCGTTACCTACGTTACCTGCTACCAACTGTGGCACCGTTGTGCAGCCAGATGAGAATCAAACTCACTGCAGTCCTGAGAATTTAAAAATCATGCAAATTTGTAAAAAAGCAAAAACTGACTCAACCAACCCAATTGATGGAGAAAGGAACTCCTTAAAATCAGAAATAGTTAAATCAGCAAGTTGTACTGAGGAGAAGGCTAATCATGTGTGTCCGGAATGTGGCAAGCAACTTTCATCTGCCTCTACTTTCAAGAGACATCTCGAAATCCATTTTGGGGGCAAACCACATATATGCTCATATTGTGATAAATGCTTCAGATATAAACACAACCTTACTGTTCATATTCGTTCTCACACAGGTGTGCGACCTTTTGACTGTCCGACCTGTAAAAGAAAATTCAGGTATCTGTCCGAGCTTAATGAACATAGACTGTCTCATAGTGGATCAAAATCATTCTCATGTCCAGAATGTGGTCAACAGTTTGCACGTCAAAGAGATCTCCGGCGACATTCTCTTTCTCACAGACAAAGCGAAAAACCGACGTGTGATATATGTCAGAAAATATTTTCTCGTGTAGATTATTTGAGAAGACACATCAAAGCTCATAAGTCATCAGCCATCATGGATGGTGAAGAGTCTTCATCATTGAAGACCGCCAGAAATCAAGTCATGAAGAAATCCGGAACACAGGACAAAATTCAAGCAGAAGTATCTCATAGCCTGAAGAACATACCAAGTGGTTCCATTAAATCTGTTCCTGAATCATACAAATCACGGAAAGCTAACTCAACTTTAGTTGTTAAAGATTGTACTTCCGATGATTTGATTAGTTTAGCATACCAAGCTGCAGAGGATGGAGTAGAATTCATGTTTGTTGAAGAAGTCAATGCCTGCGCTTATGAGCAGGACATCGAAGTCACTAGCTCAGAAGTGGAAGGCAATTTTATGCTGATAAAAACATGGGAGCAGATTTAG
- Protein Sequence
- MNSIKNCDSNPSENSSCSSNERAKIVFTIRDGSLLVTSKNDVVSKSALTGFQCLPFKNSKSKEEGEGEIYIEIIRDDVEQYEEYPINNISSSYGAFWKGDFESCIDRRTCIECKHVLFTPHQLLHHMQNTHNIQNPNECFVCHKLFSNGSESNNHMKQVHHFERPDVTCEACFKVFDSESDKNIHRTRHSERLNCKWCSEPFPCEYLLNYHLRNCSLRRIDLDCHICGCQFRSSHILQLHSLRHNRNSCELCQYSPLNVADALGEDAAVSLVKHLKNCHTQEEIDSILKKLKIQDEEEETLDKLFMSQIEENLNQLSDSIPQNCADDPQKEQSWEISLDNQQEIISRHAEASLQCTECHKTFGSKEETVKHELTHQTPFSCSVCSLKFSHRRGFKKHMRSHGILVKPSSVRYTCRHCSVNCATLSALHTHLLIHTDEKPHLCEKCGLKFRRPNALKAHDLAVHKSRVLHHCSQCDTKSLSKSSLLRHIQCVHGGVRRFICGLCGNRCLQNQGLRRHLKSEHNLELPPMESLCKKSSMEVHVIPPPQNLSPNNPIAEILKLAIRDEKSKLEALKKLPTSEETPNNESPKLLCSESVIDGQPLNILGDVASKAAPLEQASVIPEFLQPKSQEATKFLCAECQHCSDSLNDLSLHLTRCQQGRTVFAEQDSNEVLVAKPPVVYALASSLAKHSNEVSSGIPYQLCFVPPINVGSSTLGPVSVCNNSSEQTVVPSINVSTSVSLPQASRNLLATSISSTSLSDISKNNVDNNMESTENLVPVTEFNGGSRLPIDIMSLNVLDTSNTSQLEFLDASNFIFQEDFLIREETCKIYDLNEPSASFTTSNAVSLNDGRVESLKEQSSPYNCPKTMLLGADGMKVSQLLSSGLEVVSPNLPDNPKALNDSASCFLESTPPELVSSLPTLPATNCGTVVQPDENQTHCSPENLKIMQICKKAKTDSTNPIDGERNSLKSEIVKSASCTEEKANHVCPECGKQLSSASTFKRHLEIHFGGKPHICSYCDKCFRYKHNLTVHIRSHTGVRPFDCPTCKRKFRYLSELNEHRLSHSGSKSFSCPECGQQFARQRDLRRHSLSHRQSEKPTCDICQKIFSRVDYLRRHIKAHKSSAIMDGEESSSLKTARNQVMKKSGTQDKIQAEVSHSLKNIPSGSIKSVPESYKSRKANSTLVVKDCTSDDLISLAYQAAEDGVEFMFVEEVNACAYEQDIEVTSSEVEGNFMLIKTWEQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -