Tpal000376.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:1467625-1473835[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.5e-05 0.00079 19.4 0.6 1 23 1127 1149 1127 1149 0.93 2 9 0.065 2.1 8.7 0.0 2 23 1184 1206 1183 1206 0.95 3 9 0.0037 0.12 12.6 2.4 1 23 1212 1235 1212 1235 0.98 4 9 0.00021 0.0068 16.5 8.1 1 23 1241 1264 1241 1264 0.97 5 9 0.0013 0.043 14.0 1.4 2 23 1301 1323 1300 1323 0.95 6 9 0.0042 0.13 12.4 0.1 2 23 1332 1353 1332 1353 0.96 7 9 0.00043 0.014 15.5 2.3 1 23 1358 1380 1358 1380 0.98 8 9 0.00013 0.004 17.2 2.1 1 23 1383 1406 1383 1406 0.96 9 9 0.027 0.85 9.9 0.1 1 23 1411 1434 1411 1434 0.96
Sequence Information
- Coding Sequence
- ATGGAATCTTATCCAATGGCTTTGTCTTCAGAGGCAGATGTCCACTCTGGTCATTCTAACACAAGAAACGACGGTCAACATCATGGCCAGACAGATCAAGATCGACTAGCTCTGTTGCACCGCGCAAGAGCAAAGCTGAGTTTATCCAACCGAGGCGGACTTCTTCCAGAACCCTATCAAAATCCAGGGTTTCTACCTCAGGATTATAACGGTCCACCTAATGGTTTCTTTGCAGGGCAGGACCCTGGATTTCACTCATCGCATGAAAGTTATCCCAACACCATAGTTGAAAATCCTGCAGACCTTCTGAAAAGAGCCAGAGAGAAGTTAACCTTTTCAAATCGTGTTGAAGTTCATTCTAATGGCACCACAGCTGATCTGCAACCTGGTCCCTCCTCAGAGCATCGGCAGAAGAGAGAAGAGGTTGAAATCCAGGCAAGCTGTGAGCCTGATGTGTCTCCACTGGAACGACTCAGACTTGCCCGAGCGAGGCTTAGGTCGTGTGTTAACTCTCTTCCTGGATCATCAGCACCCGAACCTACAAGAAAGGTTGGGGAAAGGGAAGTTGAAAGAGAGTCTGAAGTGAAGCAAAGTCTACTTGGTCACTCTAGTCAGGCTCAAGTTCAACAGGATGTTTCTCAACAAGGTCAATCTCCAGAACAGATTCAGCAAGCTGTCTCCCCAGAACTTCAATCTTTAGAAAGGATCCAGCAATATGATTCCCCCGAAGTTGTTCATCATGGGGATGATATGGATATCGAATCAGAAtcaggcagcggcagcccatGGAGAGAAGAGGAAGTTGAAAATGCCCCAGCAAAAAGCACCTCTGAGAGCCACTTTGATTTTGGAATTGATGTTCGGAAAACTTTTCTTATGGAGCCTGAAATATTTGAACTACCTGTGAAACGCTCTTTGAAGGCTCAGAAAAATGTTGAATATCTAGAAGTAATGGAAGTGGATCCTTCCTGTACTGATACAAAATTAGAAGATAAATGGTCTCGATCTAAAAATAAGACTGAACGTAGAAAGCCTGTTGTGGATACTAATGATTTAgatttatttattattaatGAAACAAGCTCTTTCATGAGAGATAATTTATCAAGTAAGAAAACTAGTCACCCCACCAATCTCCAACAGGACCTCCATTTAGAACACATGGATGTTGGATTGGATGCATTGGAATCTGAACCAGAGGTTCTAGAAATCAAAGTTACGAACAAGACACGCACTTCCGAACACAAAAGGGCTCCTGTTGACCAGACTTCAAACCAGCAACCGCCTCCTCCAAGTGAGACATTGCTCAAGAATCCATCTGCCTGTAAAAATTTAACTGGATTCACAGTGCCTCCTCCTTCGTTGCAAACTCACCTAGGAGTCAACTCTTCCATTTCTGCATTGCCCTCAATGGTCTCCCCTCCAGTGCCTGTTCCACCACCTCAGTTTGCTGTCAATTCCATACCTACCCCTGTACCTCCACCTTCAGTGCCAAAGCCAGTGCCACCACCATTTGCTACGTTTGCTGCTGTACCAACACCTGTACCTTCTCCTCTAGTCACCATGGCCATTGCCCACTCTTCAGTTCTGCGAAATACCTCTAGCGCGCCTGCTCCAGTTCCTCCGCCTCAAGTTAACTCCAGTGTTAAGCCTGAATCTATGAGCCAACTTGAAAGCTTCCTAGGCTTCTCATTATCTTCAATTCTACCTCAATTAGAGAGCAAGCTTTCATCTGTTCCTCCTGAGAAGGCGTCCAAATCTTCTAGCAAGCCTGACAGAGCCATATCGTCTAGTGCAGCCTCGAAACCTAACAGGACTGCTCATGTGCCACCCGCATCAACCAGCAAATCAAGCAAGACTGCTTCTCTGCCACCTGGAACAACTGGAACAAGCAAAACCAGTGGGAGCTCTCCTGCGCCACCCTCCACAACCAAATCAAGCCAACGCTCCCCTGTTCCACCAACTACAAGCAGCATATCCAGCAAGACTTCTACAGCTCCGCCACATGTTTCTAGCAAATCCACAAAGCCTTCCTCATCATCTTCGAAACCACCAAAGCCAACCTCTTCTTCATCCGTTGCCGCTGAAAAACCTGTCCCTGTAACAGAGGACTCGACGCAAGCTTCTTCTGCAGACCTTCCTTTTGCCCAAGCTCCACCGCTTCCTCCCAAGGAGGCGGCTTTGGAACCCCAAGCAGATGCAAGGGACAGCACGCAAGACTCTCTATTCTCGCTGatcccaccacccccacccgctGACTCTGTGGATTTGGACGAAATGGAGGATGTCGACTTCTCCTTcacccgcctgccgcctccgcctctgGGCTCTGGGGACTTCGCCTTCACGAGGATGCCGCCGCCGTTCTTCAGCGCTGACTCTGAGCAAGCCGCCAACAGCCACAACAATCACCACATGCCGTTCACCCGcttccccccgccccaccagccaCACCAtcaccagccccaccagcctcaccaccaccagccccaccaccAAGGACCTCCCCGCCACCAGGGACCCCAGTTTAGGCCCCATGGCCCCACGTGGCAGCAAGGCAGACCGTCCGGACCAGGTCCTGGCCAAGGGCAAGGGAGGGCCCTGTTGCCTACACCAGTCAGGCCTCACTCTGGAGCAAGGCCTCCGCTCCTGCCCACACCCAAAGCCAACTTCCGCTCCGGGAGGACACGGTGGGGTGACTACAGCCCAGTGGAGGAGGTGCAGCCCAACAACAAGCCGGATGAGAAGCCAGCCGAGAAGCCTGCCCCCAAGTTCCACCCTGAGCAGCACTGGCACGGTGACGGCAAAGGGTTCGTGCCCAGCAAGTCGGACAGAGCTTCAACCCACCGCAAGCATGACGGGGCAGATTCAGACTCGGATTCCTCTATGGGTGCCTATGACGGATCAATGCATGATGCTGACGACTATCCATCTGCTGATGAGATGGAGACGGATACCTCCAATCTCAAAACAATGTCTGATAGTCATAAAAAGCAGGACACCAAGGTAGAGAAATTTTCATCTAAGAAGGCTAGTACTGAGCTTACCTTAAAGATAGAGAGTTGCACCTCTACGAAAAAGTTTGAGACTGATCGTAGTGACCGCCCAGCCCACGAAAGGAAATCTCATAAGTCGACAGACAAGTCTCATTCCAACATTCAACCAAGCGTGGCGCCACctattaaaataaaattagaGGCTGTGGATCCTGAACTGCCGATGGATATTATGGACTTCCCCGTAAATGTCAAACCTGATCCTGATGGTcccgactctctctctctccacacaaGCATTGAGCTGGACGTAGAGCATCAAGCTGTTGTTAAAATTGAGCCAGGCACCACTCAACCAATGGAAACGATTGAAGAAAATTCTTACCTGTGCACGGAGTGTGGAAAACGATTCAATGATAGATTCAATCTGGAAGCTCATTTGTATGATCATTTAGCAGAGTTTACTGGAAAGCATCCTTTTAGGTGTCCAAAGTGTCCAGGAAGAGTGTTCAAAGATATGAAGTTACACCGACATCACCATTTGATGGGTTTGGAGTGTGACGTCTGTGGAGAGGCATTCCATGCTGCTATTTCTTTAGCAGAACATCGGATGCGAGTTCACATGGCTAAGAAGAGTTATTCCTGTGGTGTTTGCAACAAGAGGTACCTTTCATCCTCTGACCTTGCGCATCACCAAAAAAGGCGTCATTCTAAGCCAAAGAAATTCAAATGTAAAAGATGTGGTAAATGTTTCAACCATTCGGATTATTTATCAAAACACGTACAGAAGTACCACTCAGAGGATCGATCTTCAGGATCTAGAGATCATCCCAAAGAAAAGGACAAGGAAATCAAGGAAAAGGACAAGCAATCATCAAAACAATTGGCAATATCCGAGTCACTTTCATGCTCACATTGCAAAGAGAACTTCACCACCAAAGACCTGTTGGATGAGCACATTGAATCAACTCATACAGAGACCAAAGACAAAAGTAATTCTTGTGAAGTTTGCGATCAGACTTTTACTTTGGTTGAAGATCTTCAGGCTCATGTAGTCACACATGGAGAGAATCCTTTCACATGTGAAGACTGTGATGCAAAATTTCCTCATAAACAAGAACTTAAGGATCACAGTAAAAAGCACAGAATTCACAAATGTGTTTTGTGTGGTTATATCACATCCTCATCATCAAACCTACTGAAGCACATGAAAAATTATCATAAAGATGATGTTTTTGAGTGTAGGAACTGTGATAAGTGGTTTCCAACTGAAGATGGACTTAAAGATCATGAGGAAACTGAGCATAAAAAGTGCCATGATGACATTAAAATAGAACCTGTGGACTCAATCGGAAGTAACTCAGAAGGAAAGTGA
- Protein Sequence
- MESYPMALSSEADVHSGHSNTRNDGQHHGQTDQDRLALLHRARAKLSLSNRGGLLPEPYQNPGFLPQDYNGPPNGFFAGQDPGFHSSHESYPNTIVENPADLLKRAREKLTFSNRVEVHSNGTTADLQPGPSSEHRQKREEVEIQASCEPDVSPLERLRLARARLRSCVNSLPGSSAPEPTRKVGEREVERESEVKQSLLGHSSQAQVQQDVSQQGQSPEQIQQAVSPELQSLERIQQYDSPEVVHHGDDMDIESESGSGSPWREEEVENAPAKSTSESHFDFGIDVRKTFLMEPEIFELPVKRSLKAQKNVEYLEVMEVDPSCTDTKLEDKWSRSKNKTERRKPVVDTNDLDLFIINETSSFMRDNLSSKKTSHPTNLQQDLHLEHMDVGLDALESEPEVLEIKVTNKTRTSEHKRAPVDQTSNQQPPPPSETLLKNPSACKNLTGFTVPPPSLQTHLGVNSSISALPSMVSPPVPVPPPQFAVNSIPTPVPPPSVPKPVPPPFATFAAVPTPVPSPLVTMAIAHSSVLRNTSSAPAPVPPPQVNSSVKPESMSQLESFLGFSLSSILPQLESKLSSVPPEKASKSSSKPDRAISSSAASKPNRTAHVPPASTSKSSKTASLPPGTTGTSKTSGSSPAPPSTTKSSQRSPVPPTTSSISSKTSTAPPHVSSKSTKPSSSSSKPPKPTSSSSVAAEKPVPVTEDSTQASSADLPFAQAPPLPPKEAALEPQADARDSTQDSLFSLIPPPPPADSVDLDEMEDVDFSFTRLPPPPLGSGDFAFTRMPPPFFSADSEQAANSHNNHHMPFTRFPPPHQPHHHQPHQPHHHQPHHQGPPRHQGPQFRPHGPTWQQGRPSGPGPGQGQGRALLPTPVRPHSGARPPLLPTPKANFRSGRTRWGDYSPVEEVQPNNKPDEKPAEKPAPKFHPEQHWHGDGKGFVPSKSDRASTHRKHDGADSDSDSSMGAYDGSMHDADDYPSADEMETDTSNLKTMSDSHKKQDTKVEKFSSKKASTELTLKIESCTSTKKFETDRSDRPAHERKSHKSTDKSHSNIQPSVAPPIKIKLEAVDPELPMDIMDFPVNVKPDPDGPDSLSLHTSIELDVEHQAVVKIEPGTTQPMETIEENSYLCTECGKRFNDRFNLEAHLYDHLAEFTGKHPFRCPKCPGRVFKDMKLHRHHHLMGLECDVCGEAFHAAISLAEHRMRVHMAKKSYSCGVCNKRYLSSSDLAHHQKRRHSKPKKFKCKRCGKCFNHSDYLSKHVQKYHSEDRSSGSRDHPKEKDKEIKEKDKQSSKQLAISESLSCSHCKENFTTKDLLDEHIESTHTETKDKSNSCEVCDQTFTLVEDLQAHVVTHGENPFTCEDCDAKFPHKQELKDHSKKHRIHKCVLCGYITSSSSNLLKHMKNYHKDDVFECRNCDKWFPTEDGLKDHEETEHKKCHDDIKIEPVDSIGSNSEGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -