Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:10458000-10466125[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00057 0.018 15.1 0.4 2 23 279 300 278 300 0.93

2 13 1.8 57 4.1 0.1 2 20 308 326 307 328 0.91

3 13 7.8 2.5e+02 2.1 1.5 2 23 334 356 333 356 0.92

4 13 0.0084 0.27 11.5 6.3 2 23 499 520 498 520 0.97

5 13 3.9e-05 0.0012 18.8 1.2 1 23 1094 1117 1094 1117 0.98

6 13 0.06 1.9 8.8 0.6 2 23 1131 1152 1130 1152 0.96

7 13 5.1e-05 0.0016 18.4 1.9 2 23 1159 1181 1158 1181 0.97

8 13 0.0068 0.21 11.8 3.3 2 23 1188 1210 1187 1210 0.95

9 13 0.1 3.2 8.1 0.6 1 20 1220 1239 1220 1241 0.94

10 13 2.6e-06 8.4e-05 22.5 0.5 1 23 1249 1271 1249 1271 0.97

11 13 0.00053 0.017 15.2 3.9 1 23 1277 1299 1277 1299 0.95

12 13 0.003 0.094 12.9 0.0 1 23 1305 1327 1305 1327 0.94

13 13 0.007 0.22 11.7 1.7 1 22 1333 1354 1333 1354 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00057	0.018	15.1	0.4	2	23	279	300	278	300	0.93
2	13	1.8	57	4.1	0.1	2	20	308	326	307	328	0.91
3	13	7.8	2.5e+02	2.1	1.5	2	23	334	356	333	356	0.92
4	13	0.0084	0.27	11.5	6.3	2	23	499	520	498	520	0.97
5	13	3.9e-05	0.0012	18.8	1.2	1	23	1094	1117	1094	1117	0.98
6	13	0.06	1.9	8.8	0.6	2	23	1131	1152	1130	1152	0.96
7	13	5.1e-05	0.0016	18.4	1.9	2	23	1159	1181	1158	1181	0.97
8	13	0.0068	0.21	11.8	3.3	2	23	1188	1210	1187	1210	0.95
9	13	0.1	3.2	8.1	0.6	1	20	1220	1239	1220	1241	0.94
10	13	2.6e-06	8.4e-05	22.5	0.5	1	23	1249	1271	1249	1271	0.97
11	13	0.00053	0.017	15.2	3.9	1	23	1277	1299	1277	1299	0.95
12	13	0.003	0.094	12.9	0.0	1	23	1305	1327	1305	1327	0.94
13	13	0.007	0.22	11.7	1.7	1	22	1333	1354	1333	1354	0.95

Sequence Information

Coding Sequence: ATGGACAGTTCAAGACCCTATCTGGAGCTACCACTTTCAATGCAGCATTCAAGTGTAACTGGAAGTAAAGAAAGAGTACCGGAAAATGATTTCCAGCAAATTTCATCTCAAACTTTACTGGACTTCCTACCCTCTTTACATAATGTCCCAAAAGGAGGGTTGGATTTGCCAGAGTTTAATCTGCCTTCCAATGAAAATATGCAAGGAGGACTACTCTCATCTTTTAAAGTGAATGACGGCTGTAATCTTTTGCTCAACCCATTTGCCGACAGTCAGCAGCTGGGCCATGGGTTATTATATGGACAACGAAATGAGATGCAAGTGAATGACACCTCAAGCCATAGTGGGAACATCTTAAGTGATCCCAATTATCTTAATATGAACACAAGTGCAGTACCTCATCATTCTCAAGGACCTGAAATATCACTATCTTCCCATATTTTTAGTAAGAATGTTGAAAGCCCCACAGCAGTTCCATCAAATTTCTCTAGTGCAATGTTGCCTTTCAATTCGTCTTATGAAGATAGCCAATTCAACAAGAATTTCGAACAACTGGAGGCTATTACCAAACATATAAAATCTGATAATTCTCCTCTTGTTAAGGAGGAGGGTACGATTGCCACAAAATCTGATCAAAGTTGCAGTGTAGAATGTGGCGACAGTGTGAGCCCTGTATGTGATATTGGAGCACCAAGAGTCAATTCACTCATAAGTGACTCTAGTGAACCGAATTTAGGCAACATTTCTGATGAGAAATTGAACTTGAAAGATTTGGATCATATTGACCTACAGCAACTTAACAGTGAAGAAGTGAAAGTGGTTGAGAGTGTTGTGACTTGTGCTTTCTGCCCAAGATCATTTAAAACTCAAGAGCAACTAAGTAAGCATGAGGCTCTGCACCCTTACCAGACCTCTGCAATTCAGTGCTCCAAGTGTGGAGAAATTTTGGGAAACTACATGTTGCTTCAGGAACACAAACAGTATGAAGATTATCTGAGTTCTTGTGACTTATGTGGACAACTTTTTCCCAATGAAGAATGCATGATTTGTCACATTAGAAATGCTCACAATGATGTTGATGATATTTTTGATGACGAGAATAATGCATCTGAAGATCTTCATGGCCCACCCAAGAATTCTACCGAAGCTCCTACAGAATCTTTTGAAGAGGCACTTTTTAATCAAAGcTCTGTTCTGGAAGACCAGGCTGAAAGTAATGAAAAATATGATCTGACACCACCACCTCCGGAAGAACAGGTAACTGCTGATGACAACCATGACAATGAAACCAATGAAGAGTTAACTCCAAGTCACTTTGAAGAAGCAAATGTGGATTCAAACATACAGCCTACTGCTGTGTTGGAGAACATTATTGAAAGTTCTAATATGGAAGCTGATGGCCCCTACTCTGAGGAGCTAGAAAACACTGTTGAGCAGTCTGTTTGTTTAAATGAGCACCTTCCCGAGACTGCTCCTAGTAAACCCAAAAAGACCAAGTGTCGGTATTGTTCCAAGAAATGTTCAACAAGGAAGAGTCTTGTTCGTCATGAAAGGAGTCACCCCTATGCAACAGCAGCCATGAAGTGTAACCTTTGCTTAGAGGTTGTTGAAAACTATAAAGCATTTAAAGTCCACAAAAAGAACCTGGGAACCCCAGTCTCATGTATCACTTGCAATCAAGTATGTCCCAATGAAAATTGTCTGAAATGCCATGTTCGAAATGTGCACAATAACTTTGTATATGGTGCCCCTCCTGTGTACAATTTGGATGATTCCAATGATGATGCTTATGAGGTTGAAGgtgaagaggaggaggagggagatAGTGATAGCGGTGCTTTATCAGCTCAACAATATTCCGTGTCAAAATATACTGTAGGGGATCCTGGTGCTCCACTTCGTATTACTATCAAACAAGAAAAAGAGGAGACATATGTTGCCCCAGTGTCTCCTTCATATTCTGCACCCACACCTCCAACACCATCCACACCATCTCCTCAAGGTGCTCCTACACCATCTCCCCCTGCCTATGTCTATGAGTCAGAACCCTCAGACGATGCAGATAATGATCAGGAATATGAGCCATATGCATCTGATCATTCAGTGGAAATTCAGAGTAAAAAACATTTACGGAGGAAGACTGCTCTGCGTTCGTCCAAAAAGTCTGGTGTACATTTCTTATCCTCAAGTGAAGAAAGTGATCATGATGAATCTGCTGATTTTAACTACAGTCCCCAAACTAATTCAGAGAGTGAAGAAAATTCTGATGAGGACCCCGAGTGGGACCAAACGGAAAACTCTTTTGGTAACTCCAAAAAGAGGACCAGAAGAAAGAACCCCTTGAGCGATGATGATTCAGATGTGGACCCTGATTGGGGGCAACAAACTTCTTCTGCAGGGAGTAAGAAAAGAGCAAGACGGAAAAAGGGCCCTCTCAGTGATGATTCTGATAATGATTTTGATTGGAGCATTCCTCAAACTTCTTTTGCTACCTCTAAAAAAAGGAGTGCTCGGAAGAAAAGTTCCTTGAGTGATGATGATTCTGACTATGACCCCGATTGGAAGCAGGATGATAACTCCTCAGGAAGTACAAAAAAGAAGGTGCCAAGCAGAAAGAGCAGAAAGAAAACCATTCAAGTTGCGTTTTTTGTGCCAGCCATTCCAGTTCCCAAAGTAAAGCGCCCAAGGGCACGCGGATTAGGAGGCCAAAAGGCTCAAGATGCAGCTGCAGCACTTGCACAAGCTGTTGAAGACATGGAAACTATTGTACCAGAACTGAAAACAGTAATTAAACCGGTACGCCGGTCTGTCACTAAGGCATCCTTAAAAACTTATAGTGAGATGTACGATGATGAATATGATTATGATCTTGTGAATGTGAAGCCAGAACCGGACGTACCTGGAGACTCTGAAACACTGATGCAAAATGAGCAAGATCCAAATGTACCAGCTGCTCAAACTTATTCCGATAGTAACAATCCTTATGAGTTTAATGATGAATTAGATGTCTCAAACTCAGATATTTCAGACAAACAAAATAGATCCAATATAGATAGCCTAAATAGTGATCAACAGGAAGAACAAATTGTAGTCAAAGCAGAGCCATATGACTTTCATGATGACGATGAGGATAACGAAGATGATGATCCCTCGTATGGAACTGATCTTTATTTCAGTAAGAAGTTTTGCGAGCCAAATTTAAAATATGGAAATATTAAATGTCCTACAACAATTAAGACAGATCCTGATGCTGatgaaaaaccaaaaaaagaGCTGAGATATGTTTGCAAAATATGTGGAAGAGCTCTTCAATACAGGTCTCACCTTGTTAGGCATTTGCGCCGAGTTCATGATGGGGAAGGTGTTGAAGAAGTGATGCGGCGCTTAATGAAGTGCAGGTTCTGTGAAAAGCCCTACTCTAATGAGCTAAGTCTTATCAACCATGAAAAACTGCATGATGGGACCAGCAAAATGAAGTGCAACAAATGCGAGGAACGTTTTGATGACAAAAATGCACTCCGAAGACATCAACGGAAAATGCATTGGGAACACCAGCCTGTGGAATGTGAAATTTGCAAAAAACAATTGTCAGATAACACTTGCCTTAAAGCACATATGAAGCATATGCATGGAGCAGAAGAGAAAAAAGTAACTGTTTTTACCTGTGAAACTTGCGGCCGGCAGCTGCATACAAAAACAGCTTTTCAAAACCATGTTGCAAGTAAATGTGGGACAAACCTTCTCTTTCCATGTGAGACATGTGGCAAGTCTTTCTCATTTAAGGGTTCTCTAAAGGCTCATCAGCTTCTTCATACTGGAGTCAAAAGCTTCTTGTGCAAATTTTGTGGGAAAGCTTTCCATCAGAAGGGAGAAATGAAGAGACATGAAAGAAAGCATACTGGTGAAAAGCCATTTGTTTGTGAAGTTTGCGGCCGAGCATTTGCATATCGTGAGAGCTTGCTTGGTCACAGTGCAGTCCACACTGGAATCAAACCGTTCCCCTGCAAGACCTGTGGTATGAGGTTTTCATGCTCTGGGAACCTAGTCAAACATAGGCGTTCAAACAATTGCAAAGGATTCTCAGAGCAGGGTGATATAACTGTTGTCAATTTGGAAGGAGAAAATACTCAAGAAAGTACAAGTGTCAGTCATGCATTGGCAGTAGATAAGCCTGCTGACCTTTTACCAGAGACAGCCACAAAGCCACCTTCTGTGATTACTGGTTTATCGAATGAGAACCGTAATTTAGTTGGTGAAAATAGCAGTGCTCCTCAAATCTCTCATAGCTTTACTAATGAAACTCACAAGATAAAGCAGGAGCCTGTGCAAACCCCCATCGCTGATATTGCTCAGCAAATTCACCAAAGTGCTGTGAACAGTGTACAAACATCCACCTCCAGTATTGTGAAGCTGCCCCCAGGAATCTCTGTGAAGCCTGCCTCAGCACTTCAATCAACTCCAAAAGAAACTAAACCCCTTCCTGATGTGAATGTTTCTCAGTATTATCAAAATTCGAGCAGCGTGAATAATCGACTGATGGGCCATTTAAATCCTATGTATGATAGACACGAGAACAATGTGGCAACTCAGAATAACTACAACTCTCACAATTTAGGTCCCTCCTTTAGTGAGAACCATTTCAGACAATCTAATCAAGTGAATGTTAATGACAGGAGATATTCGCAATTGAGTTTAGAAGGCTATGCTGGTCGCCCTGAACAATATTTTGACCATCAGTCCTTGATGAGGCATGAAATGAACCGTCAAGTTATGGAGAGAGCTGCTGATAGACAAACACCAAGATTCTTAGATTTGCGGTTTAGTGGTGTTGACAGCAGGAATGCAATGCAGTCCTATCATGGGCCAACCCTACCTCACACCTCTACTTATCCCAATATTCATTCTGGACATTTGGGAAACTATGCTGCTGCACATTCAGTGAACCATTCAGCTAATCCTGCTAATATGTATGGGAGCAACACAATGATGGCAGGGTCTGTGGGTTTCCCTGCATTCACTGCAAATAATCATATGGCTATGGGATATGGCCATAATAATCCAATCCCTGCACATGCTGTTGCTCATGCTGGTTCATATCCAACATCACATATGAGCCATCTAGAGGCTCTTTTTGGGCATTTTAGCCAAAATGCTGCGAATAATAGTTTGCAGCGTCTTTCATCTCAAAGTGCTGGGTCTACAGCTTCAAGCAACCCATCTTTACCAAGCAATCATCGTGTTTAA
Protein Sequence: MDSSRPYLELPLSMQHSSVTGSKERVPENDFQQISSQTLLDFLPSLHNVPKGGLDLPEFNLPSNENMQGGLLSSFKVNDGCNLLLNPFADSQQLGHGLLYGQRNEMQVNDTSSHSGNILSDPNYLNMNTSAVPHHSQGPEISLSSHIFSKNVESPTAVPSNFSSAMLPFNSSYEDSQFNKNFEQLEAITKHIKSDNSPLVKEEGTIATKSDQSCSVECGDSVSPVCDIGAPRVNSLISDSSEPNLGNISDEKLNLKDLDHIDLQQLNSEEVKVVESVVTCAFCPRSFKTQEQLSKHEALHPYQTSAIQCSKCGEILGNYMLLQEHKQYEDYLSSCDLCGQLFPNEECMICHIRNAHNDVDDIFDDENNASEDLHGPPKNSTEAPTESFEEALFNQSSVLEDQAESNEKYDLTPPPPEEQVTADDNHDNETNEELTPSHFEEANVDSNIQPTAVLENIIESSNMEADGPYSEELENTVEQSVCLNEHLPETAPSKPKKTKCRYCSKKCSTRKSLVRHERSHPYATAAMKCNLCLEVVENYKAFKVHKKNLGTPVSCITCNQVCPNENCLKCHVRNVHNNFVYGAPPVYNLDDSNDDAYEVEGEEEEEGDSDSGALSAQQYSVSKYTVGDPGAPLRITIKQEKEETYVAPVSPSYSAPTPPTPSTPSPQGAPTPSPPAYVYESEPSDDADNDQEYEPYASDHSVEIQSKKHLRRKTALRSSKKSGVHFLSSSEESDHDESADFNYSPQTNSESEENSDEDPEWDQTENSFGNSKKRTRRKNPLSDDDSDVDPDWGQQTSSAGSKKRARRKKGPLSDDSDNDFDWSIPQTSFATSKKRSARKKSSLSDDDSDYDPDWKQDDNSSGSTKKKVPSRKSRKKTIQVAFFVPAIPVPKVKRPRARGLGGQKAQDAAAALAQAVEDMETIVPELKTVIKPVRRSVTKASLKTYSEMYDDEYDYDLVNVKPEPDVPGDSETLMQNEQDPNVPAAQTYSDSNNPYEFNDELDVSNSDISDKQNRSNIDSLNSDQQEEQIVVKAEPYDFHDDDEDNEDDDPSYGTDLYFSKKFCEPNLKYGNIKCPTTIKTDPDADEKPKKELRYVCKICGRALQYRSHLVRHLRRVHDGEGVEEVMRRLMKCRFCEKPYSNELSLINHEKLHDGTSKMKCNKCEERFDDKNALRRHQRKMHWEHQPVECEICKKQLSDNTCLKAHMKHMHGAEEKKVTVFTCETCGRQLHTKTAFQNHVASKCGTNLLFPCETCGKSFSFKGSLKAHQLLHTGVKSFLCKFCGKAFHQKGEMKRHERKHTGEKPFVCEVCGRAFAYRESLLGHSAVHTGIKPFPCKTCGMRFSCSGNLVKHRRSNNCKGFSEQGDITVVNLEGENTQESTSVSHALAVDKPADLLPETATKPPSVITGLSNENRNLVGENSSAPQISHSFTNETHKIKQEPVQTPIADIAQQIHQSAVNSVQTSTSSIVKLPPGISVKPASALQSTPKETKPLPDVNVSQYYQNSSSVNNRLMGHLNPMYDRHENNVATQNNYNSHNLGPSFSENHFRQSNQVNVNDRRYSQLSLEGYAGRPEQYFDHQSLMRHEMNRQVMERAADRQTPRFLDLRFSGVDSRNAMQSYHGPTLPHTSTYPNIHSGHLGNYAAAHSVNHSANPANMYGSNTMMAGSVGFPAFTANNHMAMGYGHNNPIPAHAVAHAGSYPTSHMSHLEALFGHFSQNAANNSLQRLSSQSAGSTASSNPSLPSNHRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -