Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:4411587-4417112[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00018 0.0059 16.7 2.5 1 23 327 349 327 349 0.98

2 8 0.014 0.45 10.7 1.4 2 23 357 378 356 378 0.96

3 8 0.00038 0.012 15.7 0.8 1 23 384 406 384 406 0.96

4 8 6.9e-06 0.00022 21.2 0.7 1 23 412 435 412 435 0.98

5 8 0.0016 0.051 13.7 4.2 1 23 445 467 445 467 0.99

6 8 5e-05 0.0016 18.5 0.2 1 23 473 495 473 495 0.98

7 8 6.9e-07 2.2e-05 24.3 1.0 1 23 501 523 501 523 0.99

8 8 0.00051 0.016 15.3 2.0 1 23 529 552 529 552 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00018	0.0059	16.7	2.5	1	23	327	349	327	349	0.98
2	8	0.014	0.45	10.7	1.4	2	23	357	378	356	378	0.96
3	8	0.00038	0.012	15.7	0.8	1	23	384	406	384	406	0.96
4	8	6.9e-06	0.00022	21.2	0.7	1	23	412	435	412	435	0.98
5	8	0.0016	0.051	13.7	4.2	1	23	445	467	445	467	0.99
6	8	5e-05	0.0016	18.5	0.2	1	23	473	495	473	495	0.98
7	8	6.9e-07	2.2e-05	24.3	1.0	1	23	501	523	501	523	0.99
8	8	0.00051	0.016	15.3	2.0	1	23	529	552	529	552	0.94

Sequence Information

Coding Sequence: ATGTCTATTCAATCACCGAAGTATGAAACTGAAGAATACGAAGAAGAATCGCCGTATCTCGAAGGGCCTGTGGATATCGAGGGGAAATGTCGCTTGTGCTTGAAGGCGAACGAGTTGATACCCGTGCAAAATGGTGAAAACCCGGAAGGTGGCATTAGTACGGTGGCGTTGAAAATAGACATTCTTACCACGATTAAGGTAGCCCCCACTGACAAAGTTTGCACAGTTTGTcatcagaaaataaaaaacttTTACTCATTCCGAGTCATGTGTTTGAGATCAGATGCCAGGATTCGTCAGGCATCAATACCTAGTGATGTGTCTGTTTACCGTCCAGAACATACTGACTCAGTTCGTAGTTATAAAAGAGTTAAAAGAGAGTCAGAGAATTCTTTCAGCTTTCAGCATGGATCTAATGATTCTTTGACTATTATTCCAATGCCCCACAATGAAAACGGAAATTCCATGCCACTTAGAAATAAAAGAGGATCAGGTCTGACTATTTCTGCTGTTCCAATGTCTAAAGAGGCTGACCGTGTGGACCGCAGTGAAAATGGCACCCGGTGGGATCATGACAGGGACAGTGGGAGTGAGGCACCAATAGACTGTGATCCAGGAAATGCAGATGATTGCACTGACTCTCAAGGAGATGAAACAGAGAACTTGGAAGTTCAAATAGATCCATTTAGTTTAATGGGGGATGATGGTGCTGAGCCACAATATCACCAATCTCATCATAACAATGTTGTAAATGTTCGAGGTCAAATATTATACCCAGTTCTAGGGAATAATCCAGACATTCAAATCATGGGGAATATAGGAGATTTGCCGCCCCTCGTTCCTGGACCACATCGCCCTGGTCCTCTCCCGGTAAAGAATTCAAATGATCGAGACCGGGCAATTGAACTCATAAAACAGATGACATCTGTCAGACAAAAGTCAACATCTGCTCTTGATGGATCTTTCCTGGACAAGCCATTTAAATGTGATGTGTGCCCAGAAAGCTTTTCTTATTACAAGAGTTTTGTCAAACACAAGCAAAGGCATTCTGGAGAGCTCCAGCCACTTAAGTGTGAATTTTGTCCTGACCAATTCCAAACCAGTCGCCAGCTACAAAACCATTTGAAATACCATAATGTAGAGAAAGCTTTCCCATGTGATCAGTGTGAGAGATCTTTCCCCACAAAAGAACGTCTCAATTCTCACTATACATTGCACACAGGTAATAAGCCATATGTTTGTGAGATCTGTAATAAATCCTTTGCATACAAAAGTAGTTATGGCCTTCATATCAGAAAGCAACACGGAGAGCAACAGATCAAGTCTCAAAGCTTTAAATGTACAAAGTGTCATGAAGAATTTGACATCTTTGTTGATTTTAAACGTCACCTACGCACTCATGCAGGTGAAAAGCCTTTCACTTGCAATGTGTGTGACAAGGCATTTGCCTCCAAGTCTATATTGAATGTTCACTCTAGAATCCACAATGGCTTAAGGCCATACAGGTGTGATATTTGTGGCCAAGCATTTACTCAGAAGCAATCTTTAGATTACCACATGCGTAGACATAGTGAAGAAAATCCATTCAAATGTGAAATTTGTGGAATGACATTCCAGCGTCGTTATTTCCTTGACAAGCACAAAGATTCTCAGCATGGGTCTCCACCTAAAACAGTTGCTATACAACAAATCAACTCAACAGGTTATGAAGATGATGTGGACTCGAGCAGAtttggtgatgatgatgatgatgcagATAGTGATCCTTTGAAATTAGAAATTGATGAAACGTCAGGGAAATATGAAGGTGATGATGGGCAAAATGACTTGCCGGTAACTGCCGAGATTCAGGAAGATCAGTAA
Protein Sequence: MSIQSPKYETEEYEEESPYLEGPVDIEGKCRLCLKANELIPVQNGENPEGGISTVALKIDILTTIKVAPTDKVCTVCHQKIKNFYSFRVMCLRSDARIRQASIPSDVSVYRPEHTDSVRSYKRVKRESENSFSFQHGSNDSLTIIPMPHNENGNSMPLRNKRGSGLTISAVPMSKEADRVDRSENGTRWDHDRDSGSEAPIDCDPGNADDCTDSQGDETENLEVQIDPFSLMGDDGAEPQYHQSHHNNVVNVRGQILYPVLGNNPDIQIMGNIGDLPPLVPGPHRPGPLPVKNSNDRDRAIELIKQMTSVRQKSTSALDGSFLDKPFKCDVCPESFSYYKSFVKHKQRHSGELQPLKCEFCPDQFQTSRQLQNHLKYHNVEKAFPCDQCERSFPTKERLNSHYTLHTGNKPYVCEICNKSFAYKSSYGLHIRKQHGEQQIKSQSFKCTKCHEEFDIFVDFKRHLRTHAGEKPFTCNVCDKAFASKSILNVHSRIHNGLRPYRCDICGQAFTQKQSLDYHMRRHSEENPFKCEICGMTFQRRYFLDKHKDSQHGSPPKTVAIQQINSTGYEDDVDSSRFGDDDDDADSDPLKLEIDETSGKYEGDDGQNDLPVTAEIQEDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -