Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:7715480-7720363[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.99 32 4.9 0.5 2 19 172 189 171 191 0.93

2 16 0.08 2.6 8.4 0.1 2 23 219 240 219 240 0.97

3 16 0.0073 0.23 11.7 0.4 2 23 246 267 245 267 0.95

4 16 0.00014 0.0044 17.1 0.4 1 23 272 294 272 294 0.97

5 16 0.018 0.58 10.4 1.7 1 23 360 382 360 382 0.97

6 16 1.9 61 4.0 2.3 1 23 620 642 620 642 0.96

7 16 0.01 0.33 11.2 0.9 2 23 649 671 648 671 0.92

8 16 0.0023 0.074 13.2 0.4 2 23 678 700 677 700 0.94

9 16 0.00013 0.004 17.2 0.6 1 23 735 758 735 758 0.96

10 16 0.015 0.48 10.7 0.6 2 23 763 784 763 784 0.97

11 16 0.00063 0.02 15.0 2.9 1 23 791 813 791 813 0.96

12 16 0.39 12 6.2 4.1 1 20 819 838 819 841 0.94

13 16 0.00013 0.0041 17.2 0.7 1 23 847 869 847 869 0.97

14 16 3.3e-06 0.00011 22.2 4.7 1 23 875 897 875 897 0.99

15 16 7.7e-06 0.00025 21.0 0.4 1 23 903 925 903 925 0.98

16 16 0.081 2.6 8.4 2.4 1 23 931 954 931 954 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.99	32	4.9	0.5	2	19	172	189	171	191	0.93
2	16	0.08	2.6	8.4	0.1	2	23	219	240	219	240	0.97
3	16	0.0073	0.23	11.7	0.4	2	23	246	267	245	267	0.95
4	16	0.00014	0.0044	17.1	0.4	1	23	272	294	272	294	0.97
5	16	0.018	0.58	10.4	1.7	1	23	360	382	360	382	0.97
6	16	1.9	61	4.0	2.3	1	23	620	642	620	642	0.96
7	16	0.01	0.33	11.2	0.9	2	23	649	671	648	671	0.92
8	16	0.0023	0.074	13.2	0.4	2	23	678	700	677	700	0.94
9	16	0.00013	0.004	17.2	0.6	1	23	735	758	735	758	0.96
10	16	0.015	0.48	10.7	0.6	2	23	763	784	763	784	0.97
11	16	0.00063	0.02	15.0	2.9	1	23	791	813	791	813	0.96
12	16	0.39	12	6.2	4.1	1	20	819	838	819	841	0.94
13	16	0.00013	0.0041	17.2	0.7	1	23	847	869	847	869	0.97
14	16	3.3e-06	0.00011	22.2	4.7	1	23	875	897	875	897	0.99
15	16	7.7e-06	0.00025	21.0	0.4	1	23	903	925	903	925	0.98
16	16	0.081	2.6	8.4	2.4	1	23	931	954	931	954	0.96

Sequence Information

Coding Sequence: ATGGCAAAAAGACGAAATCTGAAAAAGTCAGGCATAAAAATTGATGAATCATTGGCTAATCCTGATTGCCGCTGTTTCATTTGTGACAAACATGTCGACAACAACGGAATCCAAATAATTTTAGGACGAACACCCTACTCAAATGTTAGTCTCCCAGCTAAAATTGGCCAGCTTATTGGAGACAGTTTAATGGTCGTTGTTGGGGTATCAGACACTATGTGCGCCAGTTGTGCTTCCCTGATTAGTCACCTGGACAAGCTTGAAACAGATGCCCGTTCGGTGAAAAAGACACTAATGGGTTACATCGCAGCAAAATATCAACTTAACCATCAAGAAATATGTGATCGAATAGATATTACTGAAGCAGATCCTGTAGCTCACAAGGAAGCCTCAAATCTCAAATCTGCAAGTAGTCAATCTACTGGGCAAATGCAGAGAGAAGGTAGTAGAAAGAAATCTCGCCAAGTCAGCTTACTTGTCTCAAATAGCAAGAACCGCAAAGTGACCTCACTTCACTGTCTCAACTGTAACTTCACAACAACGGACAAAGATGCATTTCAGATTCATTCTGCTTTATGTGTGAAACAAGTAAATCAATGTTTACATTGTGGCCATTCGTGCAGTCCTTGTGACCAGGTTTATTCCTTCACTGGAACTTGCAAAGTTTGTTCCCTAATTTATGGTTCAGAGGATGAATACTCTAATCATATGTCTATACATATTATCAGTGATGATAGATGTGCTGCATGTGGTGTCACCTGTTCAGATAAAAATAACTTGGTTAGTCACATTCTGAATCATGGTGAACAGTCATTTATGTGCTCTGCGTGTCCTACTACATTCAACCTTAAAAGCAATTTGAATGATCACATGGAAAGTCATATGATGCCCGATAAGTGCCTTAAATGCTCAATTGACTTTGTCTCTCAAGCCAAGCAGTTCACAGCGAGTGAATTTACCTTAGCCTGCCCGGATGAAGCTCATCAATCAGTTCAAGATAAGAGAAAGAATGTTAATGAGTACATGGAATCACTAATGAGGGTTGATAATTTTGATTCGGACAGTGGCATAGAGTTTCATTCTTGTCCAAGTTGTGGATTGACATTCCTCAACAAAATGTTGTTTTCTGAGCACATGAAAATGCACAATGAAAGTCAAGACCAGGTTATCATCAGCGAGGCACATGAAGAAGCCCTTCAAAGTGCAACTGTATCGGTGGCTGGGGATTGTTCTATTGATGATGAATTGGAGGACTTATTTGAAAAGCTACATGCAGAAACAACAAAGTCCTCCGTTGATAATAGTTGTAGCTTAAGTGATCAATTGATGAATGCACAGCATCATACAGAATTATCTATGCCTTTGAAAGAAGAGATGATGACACTGTGCCCAACAGTGGCTGCTGTTGAAGTTTCCCAGCCTCCCTGCAAATTAGTTCTCAAAAATCAGAATGTTGATAGCACTGACCACATTGAGACAGACAAAAATAAGCTTGAGCCTTCCTTTGATATGTCTCTCCTGGAGAAAGAAAACTCGAGCAACAGTGTTTTGCCTGAAGCAATGTTTGATGCGACTCAACACCAAACCTTTATTTATATTAGCAGCAACGAGGATGGTCTTACAGATTGTGATTCGCTGGGAAACCTGGTGCTGCACAAAGCCACAATTGATCCAGAGAGTGGGAATATTCATCTGTTGCCGTTTATTGCCAGTGATGAAGATTCTGCATCCCAGCTAATCTCTCCTCTTTTGTCCAACCCTGAAACATTTCGAAGTTTAATTCAAGATCCCTGTGAAGGAGAACTAGCTCAGGTTAAGGACAAACAGAATTTAAACAGTTCTAAAAGCAATGATGAATTCTCATGCAACCATTGTAGTTTCCAAACTTCAATTGAACTTGTATTGAAGCGACATCTCAAAATACATCAAAGTAATTTGGTGCAAAAGTGTTCTATTTGCAATAGGGCGTTTTCATCCACTCAAAGGCTTCTCAGTCATTTAGACTTGCGTCATAAAAGTAGTGGTCCCATCACTTGTCCCTTCTGCCTGGAAGAATTCTCCAGCTCTGCTTTTCTAAGAAATCATATGAATGATAAGCATCCGGTTGGGAAGCAGAACTTTTCATGTCGATTCTGCTCTAAGAAACTTCCAACCAGGAAGGAATGCACCATCCATGAAGAAAGTCACTCTGAAATTTTTAAATACCAATGTAAAACTTgtgcaaaaaaatttacaactCAAGATGATCTTGATGACCATGTAAAATGGGATCATGAAAAAGTGGGCCAGTGTAGATATTGTGGCAAACAAATTGATAAACCTAAGGCTCTGAAAAATCATGAGCTTCGTCACATGCAAGAATCTAACCATCACGAATGTGTTGAATGTAAGAGAGTTTTCAAAACCAAAACTGGATTAAGACACCATGCTGCATCACATACTGGACAATTTAAATATTGCTGTGATTTTTGTGGAAGAGGATTTATGTCTCGAATGATGTTGGAGGAGCACCGTAGTTGTCACACGAAAGAAGAAAGATATATTTGCGATGTTTGTGGCCAAAAGTTTACTTTCCAGAGCACATATTGGATTCACAGGAAGTGGCATGAAAATCCGTATCCTTATAAGTGTAACTATTGTGGCCGTTTCTTCAAGCATTCATCTTTACTTGCTGTTCACAAGCGGAAGCATACTGGTGAGCGGCCTTACAAATGTCCACATTGCCCATTAACTTTCCCTGTTAGTGGAACTCTGAAGAGACATATTATCTTACACACTGGTGTCTACCCTTTTAATTGTGATGTTTGTAAACGAGGGTTTACTGCTAGGCATAAGTACTCTTCTCATTTAGAAAAGGTTCATGGCATTGAAGACCTTGTCAATGAGAAACTCTCTCCAAATATGTCTAAAGTAGAAGCTTTGGATGTTACTGAAGATGGTAGCATCCCTGAAAGTATTAAAGACTGGAACCTTGGTGGTATTGTATCATCTGAAGAAAGCAATGTTCCAGCTGTGACTGAATCATCAGTGGTCGACAGCAGAGGTCCCTTAATAAATGATGAAAGTCTACCCTCAAGAGTTGTCGAGATTGTACTCAATGATTCTCATCAAGCTGTGGCAACAGTCACGCTTGGTGGAACTGAATCGGTCTTACCTGAAAATTGGTACGAGTGA
Protein Sequence: MAKRRNLKKSGIKIDESLANPDCRCFICDKHVDNNGIQIILGRTPYSNVSLPAKIGQLIGDSLMVVVGVSDTMCASCASLISHLDKLETDARSVKKTLMGYIAAKYQLNHQEICDRIDITEADPVAHKEASNLKSASSQSTGQMQREGSRKKSRQVSLLVSNSKNRKVTSLHCLNCNFTTTDKDAFQIHSALCVKQVNQCLHCGHSCSPCDQVYSFTGTCKVCSLIYGSEDEYSNHMSIHIISDDRCAACGVTCSDKNNLVSHILNHGEQSFMCSACPTTFNLKSNLNDHMESHMMPDKCLKCSIDFVSQAKQFTASEFTLACPDEAHQSVQDKRKNVNEYMESLMRVDNFDSDSGIEFHSCPSCGLTFLNKMLFSEHMKMHNESQDQVIISEAHEEALQSATVSVAGDCSIDDELEDLFEKLHAETTKSSVDNSCSLSDQLMNAQHHTELSMPLKEEMMTLCPTVAAVEVSQPPCKLVLKNQNVDSTDHIETDKNKLEPSFDMSLLEKENSSNSVLPEAMFDATQHQTFIYISSNEDGLTDCDSLGNLVLHKATIDPESGNIHLLPFIASDEDSASQLISPLLSNPETFRSLIQDPCEGELAQVKDKQNLNSSKSNDEFSCNHCSFQTSIELVLKRHLKIHQSNLVQKCSICNRAFSSTQRLLSHLDLRHKSSGPITCPFCLEEFSSSAFLRNHMNDKHPVGKQNFSCRFCSKKLPTRKECTIHEESHSEIFKYQCKTCAKKFTTQDDLDDHVKWDHEKVGQCRYCGKQIDKPKALKNHELRHMQESNHHECVECKRVFKTKTGLRHHAASHTGQFKYCCDFCGRGFMSRMMLEEHRSCHTKEERYICDVCGQKFTFQSTYWIHRKWHENPYPYKCNYCGRFFKHSSLLAVHKRKHTGERPYKCPHCPLTFPVSGTLKRHIILHTGVYPFNCDVCKRGFTARHKYSSHLEKVHGIEDLVNEKLSPNMSKVEALDVTEDGSIPESIKDWNLGGIVSSEESNVPAVTESSVVDSRGPLINDESLPSRVVEIVLNDSHQAVATVTLGGTESVLPENWYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -