Tpal004587.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:4784336-4789573[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.5 1.7e+02 2.6 2.3 1 19 383 401 383 405 0.85 2 17 0.048 1.5 9.1 1.7 2 23 441 463 440 463 0.94 3 17 0.00012 0.0039 17.2 0.1 2 23 469 491 468 491 0.95 4 17 5.6e-05 0.0018 18.3 2.2 1 23 501 523 501 523 0.98 5 17 4.5e-05 0.0014 18.6 1.5 1 23 529 551 529 551 0.98 6 17 2.6 83 3.6 0.0 1 12 560 571 560 581 0.84 7 17 0.1 3.2 8.1 2.2 1 20 595 614 595 617 0.92 8 17 0.11 3.6 7.9 5.3 1 23 623 645 623 645 0.97 9 17 0.00012 0.0038 17.3 1.4 1 23 664 687 664 687 0.95 10 17 0.0041 0.13 12.4 0.6 2 23 695 717 694 717 0.96 11 17 0.04 1.3 9.3 4.5 2 23 732 754 731 754 0.96 12 17 1.7e-07 5.5e-06 26.2 0.9 1 23 767 789 767 789 0.99 13 17 0.0019 0.062 13.5 3.0 1 23 795 818 795 818 0.97 14 17 0.024 0.75 10.1 3.7 1 23 824 846 824 846 0.97 15 17 0.0003 0.0095 16.0 1.1 1 23 852 874 852 874 0.98 16 17 0.0007 0.022 14.9 1.4 1 23 880 902 880 902 0.97 17 17 0.00012 0.0039 17.3 3.5 1 23 908 931 908 931 0.98
Sequence Information
- Coding Sequence
- ATGGATGACATTGAAGTAACTGATCACCCAGGCCCCTTGTGCCGGCTTTGTGCACATACGCAAACTCATGATGACTTGGTGTACATATTCTCGGACAAAGATGAAAATGACAACCTTGCTGATTTTATTAATCTTAATCTGCCCATTAAGGTTTCCCTTAATGATCCATTTCCAAAACAAATTTGTCAATTGTGTGTCGAGAAGCTTCAAGCAACACACGAGTTTGCTCTTCAGTGCCTTGCTGCTGAGCAAGAACTTGAAGGTCTCTTCATAGATGAAAGATTTCAATCTAATCTGGACACCCATCAAGGAAACAGACCTAGTCATGTAAAGAGTAATCCAGACAGTTTACCTAATGACTGCATTGATTTAGATGAATCTGGTGGAGTGATTGCTGCAAGTGGTGACAATCATTGTGAGGATATAATTGGAAAATACCAGTGCCCTCTTTGCTGTGAAGGCAAAATGGGGTCATGTGCTGAAGAACCAGTTGAGATGGTTGTCCGCGCCAAAGTACCGTCAAGAGCCAAAACATTTGAAGAAGAACTTATGGAACAGTACAGGCAAGCTAATGAAGAGGATGATTCCAGTCAGTCAGTTGTAGAGGAAGATTCAGATGCAGCAGCTGAGAATGAGCAGGAAGAAATGAACCAGACAGAGATTAATTGTGATGCAGAAATTGTTGATGACATCTCtaaaagtaaaataaaaatgaaacaaaagcGAGGGAAAAGGAAAGGACGGTTTGGAAGTCAAGGAAAAGTTGCCGTTATGTCTCGGCGAGCCAAAGTGGTGGGAGACTCTGAGGAGAGTGATACTCTTATTTGGATCAAAGCAGATAATGAACAATCCATACCTTTGGTTCAGTGTGTTCATTGCAGTGGGTGGCTTCCAGGGTATGGCTCCTGCTTGCAGCATTCCTTAACAAGCCACATTGATGTGAATGAGACGGAAGAAAAAACATACCACTGTGCCAGATGTGAAGGAGTGTCAGCTTCATCCCCTTCAGATTTGATTTTGCATTTTAAGGAAGCCCATTGTCCAAATCATGATTTTGAAATTGAAGAAGAAGATGGACAATTTATTGTGATTGATAAGAGTGACACAAAGAGCTTATCAGAAGCAAATAATGTTAGAGATATTACTTACTACTGTTGTATATGCGAGAAAGGATTTGATTGGCTTTTGAATTTATTGCGCCACTCTTGTTCTCAAGTTAATTGCAATGAGATGTACTGCAATGCATGTGATCAACAATACCGCAACCGCCAGCGGTTTGTATTTCACATGAATTTTCACAGTGAGAAGGCTCCTCCCTTGGAATGTGATGTTTGCCACCAATCGTTTGAAGATGACTGTCTGCTGTACAATCATGTACGGTTTGCTCATATTACTGAAAATGTGGTATGCAGTGAATGTGGCAAATATTTTAGGTCTGAAAAGGGTCTTGCTGCCCACCAATTAAGTGCTCACAACACCGATCCCTCTCTGCAAAACCGGCACAAATGCACTGTGTGTGGCAAATTCTACAGAGATAAACAGGGGCTAAAGGAGCATCTTGTTACTCACATGAGTGAAAAGCCGTTCCCCTGTGACAAATGTGACAAAGCTTACAATCGTTACTCTCGCTTGAAACAACATCAGTTGTCTCATGTTTATACAGAAGCTATGGAATGCTACGAGTGTGTCAATTGTGGCTTGGCATTTCCAGACATGGAAAAGGCATTGTTGCACTCAACTTCAGAGGATCATGAAGTGCAAAGTACAGTCCTCAGTAAAGTGTTCAGGTGTGAGTTTTGTGACACAGTTTTCTCTTGCTCTGATGGCTTGAATCAACATAGGCCTTCTCATGTTGGTGAGAAACCTTACATTTGTCATATTTGCGGTTCATCTTTCCACACCTACTCTCGTGTCACTACTCATAAAACAACTCATGGCATTTATGACCAGATTGAACCTCAAGAAGGTGACTTTACCATTCCTCGCCACTTCCTATGTGAACATTGTGGTGTGAGCTATCCATATTGGAGCTATCTTCAATCACATCGAAAAATGCGCCATAGTGAGAATCCATACTCATTAAGCTGCAAGCTATGTCCAGAGAAATTTAAGAACTCTTGGAGTGTTGTTTACCATCGCAGGAAAGTTCATGACCAGGGGGCTGATGCCAAGGAGTGGCGTAAACGGTCCTTACAATGTCCTCATTGTGGTGTCAATTGCATGTATCAACACACCTTGAATATGCATATTGAACGTAAACATGGTTCTGGAAAGAATGAGGATGGCAAAGGAGAAAACTTCCAGTGTGAGGAATGTGGCAAAGTATTTAAATACCAGTCATCTCTTGTTCTCCATCAAAAGAGTCATCAGGGGCAGAAGAGTTTCCAGTGCGAAGAATGTGACAAATCATTCCTCACAATAGCAACACTTCGGAATCATACCAAAAGATGTCATCAGGGTATCAAACCTCACCAATGTGAATTTTGTGGGAAAGCCTTTTTTCATAGGGTTACCAGAGATGACCATCTGCGTGTGCATACAGGTGAAAAACCCTTCAAATGCCAATTTTGTGAGAGAAGTTTCCGCTTGAAGTCAATGCTGGCTGACCATGCCAAAATTCACAATGATCACAGGCCTTATCCTTGTGATGTGTGTGGTTCGTCTTTCCGACGAATGGTCCATATGAAGCAACATAGAATGCTTCACACTGGTGAAAAGCCATTCCAGTGTAGCTACTGTAATCAAGATTTCCGATTAAAGCAAGAGCTTCAACGCCACACGAAAACAAAGCATGGGGAAACAGCTGCTGAAAATGTTGAAGAAGATGAGTTTATCTTTGCAGACTCATAG
- Protein Sequence
- MDDIEVTDHPGPLCRLCAHTQTHDDLVYIFSDKDENDNLADFINLNLPIKVSLNDPFPKQICQLCVEKLQATHEFALQCLAAEQELEGLFIDERFQSNLDTHQGNRPSHVKSNPDSLPNDCIDLDESGGVIAASGDNHCEDIIGKYQCPLCCEGKMGSCAEEPVEMVVRAKVPSRAKTFEEELMEQYRQANEEDDSSQSVVEEDSDAAAENEQEEMNQTEINCDAEIVDDISKSKIKMKQKRGKRKGRFGSQGKVAVMSRRAKVVGDSEESDTLIWIKADNEQSIPLVQCVHCSGWLPGYGSCLQHSLTSHIDVNETEEKTYHCARCEGVSASSPSDLILHFKEAHCPNHDFEIEEEDGQFIVIDKSDTKSLSEANNVRDITYYCCICEKGFDWLLNLLRHSCSQVNCNEMYCNACDQQYRNRQRFVFHMNFHSEKAPPLECDVCHQSFEDDCLLYNHVRFAHITENVVCSECGKYFRSEKGLAAHQLSAHNTDPSLQNRHKCTVCGKFYRDKQGLKEHLVTHMSEKPFPCDKCDKAYNRYSRLKQHQLSHVYTEAMECYECVNCGLAFPDMEKALLHSTSEDHEVQSTVLSKVFRCEFCDTVFSCSDGLNQHRPSHVGEKPYICHICGSSFHTYSRVTTHKTTHGIYDQIEPQEGDFTIPRHFLCEHCGVSYPYWSYLQSHRKMRHSENPYSLSCKLCPEKFKNSWSVVYHRRKVHDQGADAKEWRKRSLQCPHCGVNCMYQHTLNMHIERKHGSGKNEDGKGENFQCEECGKVFKYQSSLVLHQKSHQGQKSFQCEECDKSFLTIATLRNHTKRCHQGIKPHQCEFCGKAFFHRVTRDDHLRVHTGEKPFKCQFCERSFRLKSMLADHAKIHNDHRPYPCDVCGSSFRRMVHMKQHRMLHTGEKPFQCSYCNQDFRLKQELQRHTKTKHGETAAENVEEDEFIFADS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -