Tpal002707.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:972968-980477[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00047 0.015 15.4 1.2 3 23 110 130 109 130 0.98 2 13 0.00053 0.017 15.2 3.8 1 23 142 164 142 164 0.98 3 13 3e-05 0.00094 19.2 0.8 1 23 170 193 170 193 0.97 4 13 1e-08 3.3e-07 30.1 2.5 1 23 199 221 199 221 0.99 5 13 0.66 21 5.5 3.5 1 23 550 572 550 572 0.97 6 13 0.011 0.36 11.1 4.8 2 23 579 600 578 600 0.94 7 13 0.0071 0.23 11.7 1.4 3 19 609 625 608 625 0.97 8 13 0.52 17 5.8 1.7 1 21 639 659 639 660 0.94 9 13 0.77 25 5.3 0.1 2 23 814 835 813 835 0.93 10 13 0.00074 0.023 14.8 0.3 2 23 843 866 842 866 0.95 11 13 0.00029 0.0091 16.1 1.2 1 23 872 894 872 894 0.98 12 13 1.2e-05 0.0004 20.4 2.1 3 23 1264 1285 1262 1285 0.94 13 13 8.7e-05 0.0028 17.7 2.2 1 21 1292 1312 1292 1313 0.96
Sequence Information
- Coding Sequence
- ATGGCACCAGTAGGCAAAACTATTCCCCATGAGAATGGGTTTCTATCGAAAGGTGAAAATGGTCACAGCAATGTGTTGGGTGAGGGAACTAGACTGTTTCCTGAAGGAATCTACATTAAAAgcgaagaggaagaggaaccAACCTCTTATGTCGCAATGAATGGGGATGAAGGAGTGGTCATCAAGACAGAAGAAATTAGTGATGATGAATATGAGAAATCTGATGTAGATATTTTGGATGATATCAAGTCAGAAAATGAAGAGGGTAGTGACAAGTCGAGCAGCCAAGGAGATGACATCACAGAAGAACCTGGGAAACCTTTGTTGTGTAGAGTTTGTGGAAAGCAATTTACAAGAGCTTTTTATTTTAACCTGCATGTCAAAACTCACGAAATTTCAATTGCGAGTATCCCTAACAAGCCACATAAATGCCAGGAATGTGGTAAAACATTCGCTCTACTGCAGCATCTGACAGGACACTCAAGAACTCACATTGCAAGCAGATATTTTGAGTGCCCCATATGTCGAAGGAAATTTACAGAACTGTCAAATCTCACCATGCATTTGTTGAAAACGCACCCTGATGAAAAACCTTACAAATGCTCTGAATGTGACAAGCAATTCACACAATCATCGGCTTTAAAGAAGCATATGAGAACTCACAGTAGTGTTATGTCACAAGAGGAAATTGATCGAATTGATATGTTGTTTTATGTTGAAAACTGCCATGAGAAAGATGGAGATGAGCCTCTacggaaaaaaatcaaactgGAAAAAGAAGACGAAAGGACTACCCCAACTAAAGAAACCTTCAAGGAGAAGGGAAGACAGGATGACAAATCTCCACCATCTAAAGGAAAATCTCCAGCCCAGAAAGAAAAGTCAATATCACCTAAGAGGAAATCCCCTGCAAAGAATAAGGGTTTTCATCTTAAAGCTGCCATGGTTGAAAACCCAGTTGTTGAAATCAAAGAAGAAGATGTATCCTCTGACAATGAGCAAACACCCACTAGCATTTCTTCAATCAAAGAGAGAGTACCCTCTCAAACTAGGATTAACACTCTTTCCCCAGCATTGTCACCAAGTTCAGATACCTCCGCCGAATCAAGAGATTTGTCCAATCTAGACTACGATGTTCCTCTGTCAGGCATGTCACCAGAAGTACCCGCTTACATTGGAGTACTGGCGGCAATAGAAAATGACAGCTCATCGTCATCAAATTCATCTTCAAACATGGAGGATACTGGCACGGAGCTGACAAATATAAGCAATGCGAAGAACTTGTCACCTTTAAGAAATGGTGCACCACATAATAAAGTACTTAGCCCTCATTCGAAGGCCATGTTACCAACACTTTGTCAGCAAAATAGTGATTTGTTTTCAACTAAATCATCTCCTCTTCAGTTATTGCCAGAAACCAATGAAAATGGTATGGTTACTGTGGTAATCAAAGAAGAAGTTGTAAACGAAAATGAAAATGTAGCACTAACCTGCAATGGTGATAAAAATTTCAAATCCAAGTCTGCTGCATTTATCTCTCCTGATAAAAATAAACCCAACTGTGTTTTAGGGCGAGAAGGCAAGAAATCTGATAAACGAGATCCAGTACCCTCCATAGAGAAGCCTGATGGTGTGTATGAAGTGCAGTACAAGTGTCATAGATGTGAACTGTACTATGATTCTGAAGAAAAACTTCATGAGCATCTAATGGATCACACTGGTGTTAAGCTGTGTGAGTGTCGGTTTTGTGGTAAAGATTTCACCAAAATGACTTCCCTGAAAAGGCATTTGTATTATCATGTTGCTGGAACCATTCCTCAAGATTGTACAAGATGCGGCAAATCATTTTCAAGCTTCAAAGATTTAAAGGATCACTGTGCAAATAACAAATGCATTGCTGCTGCTAAGACCCAGTTCAAGTGCTTTCGGTGTAGAAAAAATACATCGTCATTGAAAAGGCTAAAAGTTCATCTTTTGTCTCAGTGTAATGAAGAACCAGTGCAGTATTACCTTCCCAAAGAAGGAAGTGATAGTAGTTCAGCTGAAGTGGATTCTGATGGTGTTTCATCTAAGGACACTGCTTCAGGGGAAAGAGATAAAGATGACTCTGGATTCTCACAGCTTTCAAGTAGGTGGGTCAATCAAAAGTTTGAGAAAGCAGTCCCCAAAGAAGATCCCGACATGCATGCATTAAATTTGGAAGCTGATGATATAGAAGCGTTGCAGATTTTAAGTGAAGTGGACAACTCAAGTCCGTCAGATGAAATCTGGAACTATCAATGTGTGAGCTGTGAAGAAAAGTTCGAAACTGCATTGAAGGCTAAAGTTCATTCCAAGGAAGAATGTCTGGCTAGGTCTGGATCAGAAAGGTCAACGGAGAAAGaaacactgaaaatcaaagtCGTATTCGAGGAAGATGAAGATTTACAGTGCTCCTTGACTTGTTCTGAGTGTGACAAAAAAGTTGTTGGAGTTGAAAAGATGCTTCTTCACATTAAAGAGCATATTTATCAACGAAATAATCTGACCTGTCCCGTACTGAAGTGTGGAAAGCTGTTCAAAGACCCAAAAGAGTTTAAACTTCATCTTAAAGGTCACACAGGACATAAGCCTTTTAAGTGTGCTGATTGCGGAAAGCGCTTCTTTTTGCGTGAAAACTATGAGAACCATGCACAGAGACATGGCATTCTCAAGAATTGGAGTTCTTTGAATACAATTATTGGAGAATCGGGTGTTAGCAAAAAAGCTGCATGTGCCAGAAGCCCCATAACTATAGAGTCGACTATTGCCAATTTAGAAGCAGCTGAACCTGATGTGGATAGGAAGCTGAGGTGGACTCCCCATGCAACCTCCCAACCAATTAGTGAACGTGATGAATTCAAACCTTCCAAAAGCATAAAGGTGGAAAAAAGCATAAAGACGGAGAAAAATATTAAGACGGAGAAAAACATTAAGACGGAGAAGAACTTTAAGACGGAGAAGAACTTCAAGACGGAGAAAAACTTTAAGACGGAGAAGAAATCTTCAACAAACTTGCCTGCTGTCTATAGACAGGCCAATCATGCTGTGTACAAATCTAAGCCAGCCATTCTCAAACCTTCACCAATTGCTAATAAAGCGCCTGAGAATGTCAATCGATCTCCACCGCCTATGATTAGAGCTGCTGCTCCTATGATCAGAACTGCCGCTCCTATGATTAGAACTGCTCCTCCAATGATTAGAACTTCTGCTCCTATGATTAGGACTGCTCCACCAATGGTTAGGACTGCTGCTCCTATGATTAGAACTTCCGCTCCTATCCACAGAACTGAATTATCTATCCATAGATCTGGGGTTCCTATTAATCTAACGGTCAATAGGCCAGTACCATCTCTTATTAGAACTGGACCTGCTATCATCAGACCCATCAGACCTGTGCCTACTCTAAACCGTGCTGTGTCTCCTGATGAGAGACCAATTCATACTTCTGCAGGTTTCTTATCTCTGACATCTGCTTTCCCTGTTTCTCAAGCAAGATCATTTGCAATTACATCACCGCCAAGCAGCAAGACTGTATTCTCTGTTGCAAATGTCTCTACAGCCAAGTTTGGATTGAGtccgaaaaattccaatggaCGCGCCCATCCTCCATCCTACTATCGCGTGTCTGAACACTCCAGGGCTCATATTCAAGCCGCAAATGCAGAATTGAGGAAGTACCCTCGGTCGGGTCGTTGCGAAGTTTGCAAGAAGATTTGCTCTCGCCTGGACAAGCACATGATGGTACATCTCAACCAGAAACCTCATCTATGCCCAATGTGTCCTCAAGCTTTCAGGCAAAGTGAGCATTTGAGGCGCCACATACGAGCAAGACATGAAGGCAACCATCGACAATTTGAATGTCCAAAGTGTCATAAAAGACTTACTAGGAAAGACAAGCTAAAGGAGCACATGAAAAACTGCATTCGTTTGGATGGTGATGTTAATATTAATAGTCCTTTAAGTAATTATAGTGATGATAGTCCTGTTACTCTTGGTGATAGTTTGTTTGACATGATACCTGGTCCACATCAACTCAATTTGCAAGGTCACAGTGTGGAATGA
- Protein Sequence
- MAPVGKTIPHENGFLSKGENGHSNVLGEGTRLFPEGIYIKSEEEEEPTSYVAMNGDEGVVIKTEEISDDEYEKSDVDILDDIKSENEEGSDKSSSQGDDITEEPGKPLLCRVCGKQFTRAFYFNLHVKTHEISIASIPNKPHKCQECGKTFALLQHLTGHSRTHIASRYFECPICRRKFTELSNLTMHLLKTHPDEKPYKCSECDKQFTQSSALKKHMRTHSSVMSQEEIDRIDMLFYVENCHEKDGDEPLRKKIKLEKEDERTTPTKETFKEKGRQDDKSPPSKGKSPAQKEKSISPKRKSPAKNKGFHLKAAMVENPVVEIKEEDVSSDNEQTPTSISSIKERVPSQTRINTLSPALSPSSDTSAESRDLSNLDYDVPLSGMSPEVPAYIGVLAAIENDSSSSSNSSSNMEDTGTELTNISNAKNLSPLRNGAPHNKVLSPHSKAMLPTLCQQNSDLFSTKSSPLQLLPETNENGMVTVVIKEEVVNENENVALTCNGDKNFKSKSAAFISPDKNKPNCVLGREGKKSDKRDPVPSIEKPDGVYEVQYKCHRCELYYDSEEKLHEHLMDHTGVKLCECRFCGKDFTKMTSLKRHLYYHVAGTIPQDCTRCGKSFSSFKDLKDHCANNKCIAAAKTQFKCFRCRKNTSSLKRLKVHLLSQCNEEPVQYYLPKEGSDSSSAEVDSDGVSSKDTASGERDKDDSGFSQLSSRWVNQKFEKAVPKEDPDMHALNLEADDIEALQILSEVDNSSPSDEIWNYQCVSCEEKFETALKAKVHSKEECLARSGSERSTEKETLKIKVVFEEDEDLQCSLTCSECDKKVVGVEKMLLHIKEHIYQRNNLTCPVLKCGKLFKDPKEFKLHLKGHTGHKPFKCADCGKRFFLRENYENHAQRHGILKNWSSLNTIIGESGVSKKAACARSPITIESTIANLEAAEPDVDRKLRWTPHATSQPISERDEFKPSKSIKVEKSIKTEKNIKTEKNIKTEKNFKTEKNFKTEKNFKTEKKSSTNLPAVYRQANHAVYKSKPAILKPSPIANKAPENVNRSPPPMIRAAAPMIRTAAPMIRTAPPMIRTSAPMIRTAPPMVRTAAPMIRTSAPIHRTELSIHRSGVPINLTVNRPVPSLIRTGPAIIRPIRPVPTLNRAVSPDERPIHTSAGFLSLTSAFPVSQARSFAITSPPSSKTVFSVANVSTAKFGLSPKNSNGRAHPPSYYRVSEHSRAHIQAANAELRKYPRSGRCEVCKKICSRLDKHMMVHLNQKPHLCPMCPQAFRQSEHLRRHIRARHEGNHRQFECPKCHKRLTRKDKLKEHMKNCIRLDGDVNINSPLSNYSDDSPVTLGDSLFDMIPGPHQLNLQGHSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -