Tpal007203.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:1046863-1060966[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.7 85 3.6 0.5 1 23 7 29 7 29 0.94
2 16 0.24 7.5 6.9 0.8 2 23 37 58 36 58 0.97
3 16 3.4e-06 0.00011 22.1 3.1 1 23 64 86 64 86 0.98
4 16 0.00015 0.0048 16.9 1.6 1 23 91 113 91 113 0.98
5 16 3e-05 0.00095 19.2 1.9 1 23 119 141 119 141 0.98
6 16 8 2.5e+02 2.1 0.8 7 23 153 169 153 169 0.93
7 16 1.3 41 4.6 0.1 8 23 182 197 181 197 0.91
8 16 0.065 2.1 8.7 0.2 2 23 425 446 424 446 0.95
9 16 3.6 1.1e+02 3.2 0.4 1 10 464 473 464 481 0.80
10 16 5.9e-05 0.0019 18.2 0.8 1 23 502 524 502 524 0.97
11 16 0.17 5.5 7.3 2.8 1 23 676 698 676 698 0.98
12 16 0.00021 0.0068 16.5 1.1 1 23 718 740 718 740 0.99
13 16 0.00069 0.022 14.9 2.0 1 23 760 782 760 782 0.97
14 16 3e-05 0.00096 19.2 3.6 1 23 802 824 802 824 0.99
15 16 0.00037 0.012 15.7 1.8 1 23 843 866 843 866 0.96
16 16 0.0004 0.013 15.6 0.0 2 23 871 892 870 892 0.96

Sequence Information

Coding Sequence
ATGGGCAAAGGTTCACCTCACAACTGTCGTGCTTGTGGTGCAGAGTTCCCCAGTTTTCGCGAGATGGCTTTGCACTTTCTCACCCATGCAACAGGAGCGGAACCTATcaagtgcacagtttgcagtAAACTGTGTAAGGATGGACCCGATTTCGCAACTCATCTTGAAACTCACTCAGAGAAAATGAGTCACCAATGTTCAGTTTGCGATAAGAAGTTCAAGACTCAAGGTTATCTGAGAAATCATGAGAGGATTCACACCGAGAGGTCTTTCCAGTGCACGATATGCAAAAAGAAATTTGCCACAGAATTGTACCTGAGGGAACATGAAAGGAATCACACAGCGGAAAAGCGTTTTGAATGCCCAGATTGCGGCAAAAAATTTCTGTTCAAGAAGAATCTCGAAATTCATCACCGAGTTCACACGGCCGTGAAGCCTTATGAGTCCACTATTGGCGATAAAAAATCTCGACGCCGGAATGCTCTTTCGATTCATTTTCGGACCCATACCGGCAAGCAGCCTTTCCAGTACCCAATCTTCAGCCGCAAGTTCACCACCAGAGGCACTCTGAAGGCGCATGTCGAGGCCCACTCCATGCAGGAGCCCATGGACCTGCGGTGCGTGGATAGGCGGGATCATGcaagagcgacagagacacgccGGGTCTCCGCTGGCACCGCACCTGGAACTAACGCACAGGGCCCGGCACGGACCCCTTTGTGTTTGCCACCTCCCCCGGCCGTTCCACCAGTGTCACAGCCTGGCTGtgcggccagccccagccagggcCGGACCTCGGTAGACCTGCGCAGACCCGACGCATTCGCCTCGCAGTGGAGTGCCAGCGTACCGGTGTTGCGGTCCACACGTGTCTTCTCTCCCACGAAGCCGAAGCCTTTGGAGTGTGCCAATCTCGGTACGGCGTTCCGAGAGGGCCGTGAGCTGCGACCTCCTCTCCCACCTCGAGCAGGACAGGAGCCTTTCCGTCACCCAGACGAGAAATTCGATCGACACAGTGCCCTTACACGCTACGCAAGAGCCTGCGTAGGCGAGGAGAAGCCCTGCCAGGACACGGGGCTTAATCAAAGGCTCCGTCGCAAAGATGACTCAAGTACACGTCTTGGAACCCACACAGCGGAGAAACCCCTAGACCTTCGGAAGGTCGCCCCGGCGGAACcgacgcccggccctgccaaaGTGGGACCATTCGGCTCTGAATCTCCACCAAGCGAGGCCAATCCCACTCGTTGCCGGAACACGGAGAAGCCTTTGGTGTGCGCGGATTGCAATCCGAAGAGAAGTACGGAGTCATCTCTTTCAAACCATCTGAAAGCCCATACGAGAAGCAATATTCAACCTAACGAAGAAACCCACGCTGGAGAGAAACCGTTCAAGTGCACCATTTGCAAGAAGTTGAGCAACTCGTCTTATTCGAGTCACCTTGAAGCAGGCATGAAACTGAACCCTCGAACTCCTCGTCAAACCAACAGTGGAGGGAAGACTTACGAGTGCACAATATGCAATGAGAACTTTCGGACCAAAAGACTTCTGAGATTGCACGTTGAAAATCATAATCGTGTGGAGTCATGGAGATCAATCACCCCAACACTAACGCATCCCTTCGATAAGTCCTTCATGTATCAGTTTATGGCACAACCCATGGCGCCAATGTTCCAGCCCATCGATCCAAGGGCACCACTCATGTCACCCATGGCAGAGCTTATTGCAAAATTTTCGGCGCAGCCTGTGTCACAGCCCATGGCACAGCCTATGGCACAGCCTATGGCACAACCTATGGCACAGCCTATGGCACAACCTATGGCACAACCTATGGCACAGCCTATGGAACAGTCTACAACACAACCTGTGGTACAGCCTATGGCTCAACCTGTGGAGCAACCTATGGCGCAGCCTGTGACACAACCTTCGACGCAGCCTGCCAGTTCCGTCGAGTCTCGTGAGAAAGAACCCGACGAAACCGAACGTGTCCAGGGCAAGACGGCGTCAGATTCAATGCAGAAACCTTTCAAGTGCACACTTTGCAGTTCCAGTTTCAACTGTGAAGTTAATCTGGATCGTCATCTCCTTACCCATGAGTCCGAAAACGAACGCAGCAAGGGCAAGACGGCGTTAGAGTCAATGCAGAAACCTTTCAAGTGCACACTTTGCAGTTCAAGTTTCAACCGTGAAGTTAATCTGGATCGTCATCTCCTTACCCATGAGTACGAAAACAACGGCAGCAAGGGCGGGACGGCGTCAGAGTCAATGCAGAAACGGTTCGAGTGCACACCCTGCAGTTCAAGTTTCAAACATGAAGTCAATCTTGAACGTCACCTCCGTACCCATGAGTACGAAATCAACGGCAGCAAGGGCGGGACGGCGTCAGAGTCAATGCAGAAACGTTTCAAGTGCACACTTTGCAGTTCAAGTTTCAAACATGAAGTTAATCTTGAACGTCACCTCCGTACCCATGAGAGAAAAGGGCTGGACGGCCGGGTTTTATTATTCCACGATGTAATAAGACCCTATCAGTGCAAAGAATGCAGCAAATCATTTAGCTCCAGAGACAGGATGAGTTATCACATTGATAAAGACCATGTTCGTCCCATCAGTTGCGTAGTTTGCAACCAAGTTTTCGGTGATTCAAGCGCTCTTGCCTCCCACGTTAAAACTCACACAGGGCAAAAATGGTCATCATGGAACTAG
Protein Sequence
MGKGSPHNCRACGAEFPSFREMALHFLTHATGAEPIKCTVCSKLCKDGPDFATHLETHSEKMSHQCSVCDKKFKTQGYLRNHERIHTERSFQCTICKKKFATELYLREHERNHTAEKRFECPDCGKKFLFKKNLEIHHRVHTAVKPYESTIGDKKSRRRNALSIHFRTHTGKQPFQYPIFSRKFTTRGTLKAHVEAHSMQEPMDLRCVDRRDHARATETRRVSAGTAPGTNAQGPARTPLCLPPPPAVPPVSQPGCAASPSQGRTSVDLRRPDAFASQWSASVPVLRSTRVFSPTKPKPLECANLGTAFREGRELRPPLPPRAGQEPFRHPDEKFDRHSALTRYARACVGEEKPCQDTGLNQRLRRKDDSSTRLGTHTAEKPLDLRKVAPAEPTPGPAKVGPFGSESPPSEANPTRCRNTEKPLVCADCNPKRSTESSLSNHLKAHTRSNIQPNEETHAGEKPFKCTICKKLSNSSYSSHLEAGMKLNPRTPRQTNSGGKTYECTICNENFRTKRLLRLHVENHNRVESWRSITPTLTHPFDKSFMYQFMAQPMAPMFQPIDPRAPLMSPMAELIAKFSAQPVSQPMAQPMAQPMAQPMAQPMAQPMAQPMAQPMEQSTTQPVVQPMAQPVEQPMAQPVTQPSTQPASSVESREKEPDETERVQGKTASDSMQKPFKCTLCSSSFNCEVNLDRHLLTHESENERSKGKTALESMQKPFKCTLCSSSFNREVNLDRHLLTHEYENNGSKGGTASESMQKRFECTPCSSSFKHEVNLERHLRTHEYEINGSKGGTASESMQKRFKCTLCSSSFKHEVNLERHLRTHERKGLDGRVLLFHDVIRPYQCKECSKSFSSRDRMSYHIDKDHVRPISCVVCNQVFGDSSALASHVKTHTGQKWSSWN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-