Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:16060964-16065699[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.7e-05 0.0015 18.5 2.0 1 23 188 211 188 211 0.93

2 10 0.0005 0.016 15.3 3.6 1 23 219 241 219 241 0.98

3 10 0.027 0.86 9.9 2.8 1 23 296 318 296 318 0.97

4 10 5.4e-05 0.0017 18.4 3.9 1 23 324 347 324 347 0.96

5 10 2e-05 0.00064 19.7 2.8 1 23 353 375 353 375 0.98

6 10 1.1e-06 3.3e-05 23.7 2.7 2 23 382 403 381 403 0.97

7 10 0.00013 0.0042 17.1 1.9 1 23 409 431 409 431 0.95

8 10 1.2e-06 3.7e-05 23.6 0.2 1 23 437 459 437 459 0.98

9 10 0.00016 0.0052 16.8 0.3 1 23 465 487 465 487 0.98

10 10 3.9e-05 0.0012 18.8 0.5 1 23 493 516 493 516 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.7e-05	0.0015	18.5	2.0	1	23	188	211	188	211	0.93
2	10	0.0005	0.016	15.3	3.6	1	23	219	241	219	241	0.98
3	10	0.027	0.86	9.9	2.8	1	23	296	318	296	318	0.97
4	10	5.4e-05	0.0017	18.4	3.9	1	23	324	347	324	347	0.96
5	10	2e-05	0.00064	19.7	2.8	1	23	353	375	353	375	0.98
6	10	1.1e-06	3.3e-05	23.7	2.7	2	23	382	403	381	403	0.97
7	10	0.00013	0.0042	17.1	1.9	1	23	409	431	409	431	0.95
8	10	1.2e-06	3.7e-05	23.6	0.2	1	23	437	459	437	459	0.98
9	10	0.00016	0.0052	16.8	0.3	1	23	465	487	465	487	0.98
10	10	3.9e-05	0.0012	18.8	0.5	1	23	493	516	493	516	0.94

Sequence Information

Coding Sequence: ATGGTCTTTGTTAGAGCGTGCCGCTTGTGCTTGGATTTGTCGCCGGATTCAGAGCTTTTCGAAGGCAACTCAACCGGACACTCTACAGCGCTCGACGAGAATTTGAAGTTTAAAATATATGCCTGTACCTCCTTGAAGGTTTCCACCGGCGATGGATTGCCTGAATCAGTTTGTGAGTCGTGCATGCGCTTGCTGGACAAGTTCTTCCTCTTTCGCAAAATGTGCTGGGAGGTTGATGGCAAATTAAAATTGTATTTGTTTCCTGACAAAGATGGAGGTGGTGAGCCCTCTACTGTGTCAATACCAGAACCTGTTCGCCTGGATGAGGATCAGCTGGAGGCACCCATCAAAGTGAAGGATTCATGGATTGTTGTTTCACCCCAAATTAAAGATGAGCTAGGTACGACTGATGATGAAATTGAAGAGGTTGTAGAAAATTATGATGTAGTGGagaatgatgatgatgatgaagttCTTGAGAATGAAGTTGTGGAAAATGGTGTTGTGGAGGATAGTCAAGAATCAGCTGTTGAACATGCACCACTTAGATCCAAGTCACAGTTCCATTGTGAAAAGTGCAATGAATCATTTAAAAGTCCTCAATATTTAAAAATCCATATGGAAGACAATCATCCGGACCTCTCAAAACCAACATATCACTGCAAGATATGCACCAAACCATATAGACAGTTAAAGCGACTCCAAAACCACTTGAAGATTCATGAAGCCCTTGGAGATATTAAATTAGATGATGAAAACAAGAAAACTTCAAATGACTCGGATTCAGACTCTCAAAACCAAAGGCTGCATGAAGGTGACAATGACAACAGTCAGTCAGAGGCTGGGGAATCAGCTGgtgggaagaagaagaagtacCGTAAAGTGTACGACTGTGAGTATTGTGATCAAATATTTCATAGCTACACCAAGTATACTTTGCATGAACTTACTCACACTGGTGAGAAAAAGTACAATTGCTCTGACTGTTCACGTAGTTTTACACATAAGCATAGCTTAATAGGCCATATTAGAGAGCAACATACAGGTGAGGTGAATTTTACCTGTGATGTTTGTGGACGTGGGTTTGTTCATCGATCCACATTCAACATCCATAAGAAGACGCATTCCACTGAAAAAACACTTAAATGTCCTGACTGTGACAAATGTTTCACTCAAATGAAAAATCTCAGAGTTCATCGACAGATTCACACTGCTTCACGCTCGCACACCTGTCAAGTGTGTGGTAAAAGCTTTAATTTCTTAAAAACGTTAAAAGTGCATTTAGTTTTGCACTCAGGGGAAAAACCTTTTGTTTGTACATATTGTGGAAAGGCTTTTGCCCAGTCAGCTCCCCTTAAAACCCACACAAGAATTCATACTGGTGAGAGACCATATGAATGTAAGTTATGCCCATCGAGTTACTCCACTAGCAATGCTTTGAAAGCTCATGTGCTTAAGCATTCAGGTGAAGCCCCTTATTCGTGCAATGTTTGCAACAAAGGATTCAACAGGAAGAAGGACATGATTGCTCATCAAGAGGAAAACCACGAAGTACATGTGGCCATGTCTGATGATATGAATCCGGATCCAAATAATGTGGCCTCCATACCTCAAAATTCTCAAAATACTGTGCATAATTCATCCATGGGGctacaacaaaattgtttgcAGTTACAGCAACCACCACCCCTGGTTCCAATACCAATGATGGTTGGACCCAATTTAACTACAGACACTATGACTTCTCATCAATCCCCACCATCTCTCATGCCACATTCAATTTCATCTCTTAATCACTCACAGATGATTCTTCATACATCGCAGCAGTTACATACAATGACGCATCATCCTGGGCCTCACCTTGCAACACCTGCAAACTGTATGCCCTTGCCACATTCTTCTACTCATTATAACACTCCTCCTGACTGTTCTGGAGGTTAG
Protein Sequence: MVFVRACRLCLDLSPDSELFEGNSTGHSTALDENLKFKIYACTSLKVSTGDGLPESVCESCMRLLDKFFLFRKMCWEVDGKLKLYLFPDKDGGGEPSTVSIPEPVRLDEDQLEAPIKVKDSWIVVSPQIKDELGTTDDEIEEVVENYDVVENDDDDEVLENEVVENGVVEDSQESAVEHAPLRSKSQFHCEKCNESFKSPQYLKIHMEDNHPDLSKPTYHCKICTKPYRQLKRLQNHLKIHEALGDIKLDDENKKTSNDSDSDSQNQRLHEGDNDNSQSEAGESAGGKKKKYRKVYDCEYCDQIFHSYTKYTLHELTHTGEKKYNCSDCSRSFTHKHSLIGHIREQHTGEVNFTCDVCGRGFVHRSTFNIHKKTHSTEKTLKCPDCDKCFTQMKNLRVHRQIHTASRSHTCQVCGKSFNFLKTLKVHLVLHSGEKPFVCTYCGKAFAQSAPLKTHTRIHTGERPYECKLCPSSYSTSNALKAHVLKHSGEAPYSCNVCNKGFNRKKDMIAHQEENHEVHVAMSDDMNPDPNNVASIPQNSQNTVHNSSMGLQQNCLQLQQPPPLVPIPMMVGPNLTTDTMTSHQSPPSLMPHSISSLNHSQMILHTSQQLHTMTHHPGPHLATPANCMPLPHSSTHYNTPPDCSGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -