Tpal008752.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:4988066-4991771[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.002 0.064 13.4 2.7 2 23 182 203 181 203 0.97
2 16 0.4 13 6.2 0.3 3 23 215 235 213 235 0.97
3 16 0.00014 0.0044 17.1 1.1 1 23 241 263 241 263 0.98
4 16 0.0082 0.26 11.5 0.0 1 21 266 286 266 287 0.96
5 16 0.17 5.4 7.4 0.2 1 23 487 509 487 509 0.97
6 16 0.0011 0.036 14.2 1.3 2 23 516 537 515 537 0.97
7 16 0.004 0.13 12.5 0.3 3 23 548 569 547 569 0.94
8 16 0.28 9 6.7 3.1 1 23 573 595 573 595 0.93
9 16 3e-05 0.00094 19.2 0.9 2 23 602 624 601 624 0.92
10 16 0.0045 0.14 12.3 4.1 2 23 628 649 627 649 0.97
11 16 0.0002 0.0064 16.6 0.5 1 23 656 678 656 678 0.97
12 16 0.055 1.8 8.9 0.4 1 23 684 706 684 706 0.94
13 16 1e-05 0.00033 20.6 0.8 1 23 712 734 712 734 0.98
14 16 4.9e-05 0.0016 18.5 4.8 1 23 740 763 740 763 0.98
15 16 0.00092 0.029 14.5 1.7 1 23 769 791 769 791 0.95
16 16 0.027 0.85 9.9 0.4 1 23 797 820 797 820 0.93

Sequence Information

Coding Sequence
aTGGCTGATGTATTAATGAAGAGCAGTCAGTGCTTTGTGTGCGACAAAGACTTGTCCCTATCTAGAGATCGCAATGCTCTTTTGCTATCCAACCTCACAGAATACTCCGGCACTGGCCTTCCAACAAAGATAGGACAGTTAATGGGTGATGGATTTATGGTTGTCGTAACTGCTTGTGATGAGGCTTGCAGTCGCTGCCACGATCTTCTCAATTTATTGGACAAATTAGAAGTAGACCTTGACAAAGTTCGCCGTCTACTAACCAGTTACCTCCGCAAAAAATATGGCCTTCTTGAAATTATCAAGGAGGAGCCGTCTGAATCTGCTGAGAATCGCGCTCCGATCTTTGATGAAAGAGCTAAACGAAATTTGGAAGAAGATGTCAATCAGATCATGTATGGTAAAGGTGGCCATTTGGATATAGACTTCAAGTCTTCTATTTTAGATGAAAACTCAAAAATAATTGATTTACTCAAGGCCAATACCAACACAAAGCAAATACCAATGATGGTGCCTTTCAAGCCAATGCCCACCAAGGTATGGAAGTGTAAAAGTTGTGGAATGAAGTGCCGGTCATGGAAAGAGTTAAGAATCCATGAGAAAAGTCATGTGCTAGTCTCTCCCAAAAGATTTCTGTTCGGTTGTAGCATGTGTGATTTCACAGCTTCCGCAAAGTCTGAACTTGATGAACATTCTCGCAAACATGTATTTCCAAAGTCTTTTGAATGTGAGATATGCAGTAAGTGCTTCAACTCTCAAGTTTCACTAGACGAACATGCAAGTACCCACAAGATATACCAGTGTGCAGACTGTGGAGCTGCATATGAACAAATTGAAAGTCTCACTGTTCACCAATGTGGGCCTCAAGATGCAAATGATCAGTCACCTGTCATATGCGTGATCAACGTTGAGCCAGCAGATGTCGTTGAGTCTTCTGAAAATGTAGCTGATCAACTTCAATCAGAAGAAAATTCACAGTCAACTGACTTTGATTCCCTCTGCCGAGATACTTTGAGAGAGGAATTTGAAGCTTCAGATAATACTGAAACTGATAATATCAAAGAAGAAGAACACAATTTTGCTCAAAAATCCGATGCTACTTCTATAAATGTGGCTTTCCAAAATCAACTGGAGACACTTGATGAAGAAATGTCTTCTCCAATAAGTTTGTTCAGTGGTGATGATCAATTCGACATGGGTGCAGAGAATGAGGAAGGGGAAGATGGTATTGAAGAAATCAATGAAGATGCAGAAGATGATTTCTTAAATGATGGTGAAAACTTTCACAGTGACAAAGATTCTGGTAAGACTGTTAACAAAATATTTGTTAATGGAGTCGAAGTTTCCTTTGACGATATTGTCGGTCAGGAAGGAGACAGTGTCTTAGCTGTTGATTTAGTGTCAGCAGAACTTGATGAGCAGACTGGAGAACTCAAGGATGATACTGAGGGTAAGGTATTTGTATGTTCCATTTGCGAGTTTCGCACTGAAGATCAAATTGAAATATCAAAGCATTTAGAGTCCCACAGCATTGCTTTTTCATTAGAATGTGAAATTTGTCAGATGAAACTGAAAAACCAGCGCACCTATGAAAAACACATGCAGAGGCACTTAAGTCTGAAGAGCCCTGTTCCTGTAGCTTGTACAGTGTGTAAAGAAATTACCTCTGACAAATTTGCATTGCGTAAGCATATGCTTGACAACCACCCAGAAGTATTCAAATGTCAGTTCTGCCATGAATCTTTTGAATCAATCCGAGCTCGTCGTAAGCATGAATCGGAGCATGATGCTGACTCTGATAAAACTTGTGATGAGTGTGGTAAATCATTTCGCAAGTTATCACAACTTACTTTACACAAAGAATATGCTCATCGAGAACTCAAATGTCAGCATTGTGAAAAACAATTTGATACTATCAAGAAATTAAAAGATCATGAAAGACGCCATGTTCGTGACAAGGAAGGCTTCCCTTGCTCTCAGTGTGATAGAGTTCTAAAAACATCTTCTGGCTTGAAGTTGCATAGAGCGAAACATACTGGTCAATATAAATTTTGTTGTGATGTCTGTGGCAGAGGTTTTATGTCAAAAGCCATTCTGGATGAGCACATGGGTCGTCACACACAAGAAAAACGGTACACTTGTGATGTATGTGGCAAAATGTTTGTATTTAATAGCACTATGAGAATACATAGAAGATGGCATGATAATCCTCTTCCATACAAATGCAAAACATGTGGACAGAGATTTAGACATACTTCTTTATTGTCAGTTCATCGAAGAAGAATGCACACAGGAGAAAGACCGTATAAGTGCCCATATTGCGCACTGACTTTTACGGTCAGCAATTGTCTTAAGAGGCATGTTGTTCTCCACACAGGAGCATATCCATACTTCTGTGAGCCATGCAACAAAGGTTTTACCACTAAACAAAAAATGGCTGTGCACCTTGCAAAAGTTCACAATAACAAAGAAATGTTAAATACCAAAGCTCCTCCTTGTGAGTACAAAATGGTCATTCCAAACACTCCAATTCAAGCACCTGCGGAATTGGATGATGAAAAAGACTTTGTTACTGGTATGGAGGGTGTAGAGCATGTAGGTGAAGTTCAGCATGTAATTATACAGGGTGATCAACAACAGTTAGAAGCTGAGGGGAATATACAGTTGCAAATTATAACAATGGATCCAGACCACGGATTTTCTGTGTTTGAATAG
Protein Sequence
MADVLMKSSQCFVCDKDLSLSRDRNALLLSNLTEYSGTGLPTKIGQLMGDGFMVVVTACDEACSRCHDLLNLLDKLEVDLDKVRRLLTSYLRKKYGLLEIIKEEPSESAENRAPIFDERAKRNLEEDVNQIMYGKGGHLDIDFKSSILDENSKIIDLLKANTNTKQIPMMVPFKPMPTKVWKCKSCGMKCRSWKELRIHEKSHVLVSPKRFLFGCSMCDFTASAKSELDEHSRKHVFPKSFECEICSKCFNSQVSLDEHASTHKIYQCADCGAAYEQIESLTVHQCGPQDANDQSPVICVINVEPADVVESSENVADQLQSEENSQSTDFDSLCRDTLREEFEASDNTETDNIKEEEHNFAQKSDATSINVAFQNQLETLDEEMSSPISLFSGDDQFDMGAENEEGEDGIEEINEDAEDDFLNDGENFHSDKDSGKTVNKIFVNGVEVSFDDIVGQEGDSVLAVDLVSAELDEQTGELKDDTEGKVFVCSICEFRTEDQIEISKHLESHSIAFSLECEICQMKLKNQRTYEKHMQRHLSLKSPVPVACTVCKEITSDKFALRKHMLDNHPEVFKCQFCHESFESIRARRKHESEHDADSDKTCDECGKSFRKLSQLTLHKEYAHRELKCQHCEKQFDTIKKLKDHERRHVRDKEGFPCSQCDRVLKTSSGLKLHRAKHTGQYKFCCDVCGRGFMSKAILDEHMGRHTQEKRYTCDVCGKMFVFNSTMRIHRRWHDNPLPYKCKTCGQRFRHTSLLSVHRRRMHTGERPYKCPYCALTFTVSNCLKRHVVLHTGAYPYFCEPCNKGFTTKQKMAVHLAKVHNNKEMLNTKAPPCEYKMVIPNTPIQAPAELDDEKDFVTGMEGVEHVGEVQHVIIQGDQQQLEAEGNIQLQIITMDPDHGFSVFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-