Tpal001320.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:9906295-9912735[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.17 5.5 7.3 1.1 1 23 171 194 171 194 0.97
2 16 3.6 1.1e+02 3.2 2.2 2 20 303 321 302 325 0.87
3 16 0.36 12 6.3 1.3 2 21 340 359 339 360 0.93
4 16 0.003 0.097 12.8 0.2 2 23 375 396 374 396 0.96
5 16 0.0023 0.074 13.2 3.7 2 23 401 422 400 422 0.97
6 16 2.4e-05 0.00076 19.5 1.2 2 23 429 450 428 450 0.97
7 16 0.00019 0.0059 16.7 0.4 1 23 456 478 456 478 0.96
8 16 2.1e-06 6.8e-05 22.8 0.2 1 20 484 503 484 505 0.94
9 16 0.48 15 5.9 4.0 2 23 512 533 511 533 0.91
10 16 0.00089 0.028 14.5 0.5 1 23 554 577 554 577 0.95
11 16 4.9e-05 0.0016 18.5 0.4 1 23 596 618 596 618 0.98
12 16 0.00077 0.024 14.7 1.3 1 23 624 646 624 646 0.99
13 16 0.0024 0.076 13.2 1.0 1 23 652 674 652 674 0.98
14 16 0.00035 0.011 15.8 0.1 1 23 680 702 680 702 0.98
15 16 3.6e-06 0.00011 22.1 1.2 1 23 708 730 708 730 0.98
16 16 0.023 0.74 10.1 6.9 1 23 736 758 736 758 0.98

Sequence Information

Coding Sequence
ATGGACCACAATACCACTTATGCCTGTGTGGAATATGATCTAGGAGAAGAACAACGCTTGGAAGGAATGTGTCGAGTGTGTGCCTCATCGAGCTGTGAATTAACACCTGTATTTGATTCTTCTGGTCAAAGCGAAGGGATTGTCGACCTGATTAACAATCATCTACCTATTTTGGTTACTCCGACTGACCTCTTACCAATTACAATTTGTGCTGCATGCATTGAGACTCTATCCTCAATCCACAACCTTGTAGAAGTATGTGTGAAAGCGAATGAAAAGATGCAGCAAATGCTTCAGGATGTTGAAGTAGACTTCACTGAACTGGAAAGTTATGGAGTCCCAAATGAAGAAGTCTGTGAATCCTCTTTTAAGCTTGTACCTTCAGTTGAAAGggATGAGGAAAAGGAATTGGAAGTGAACACATTGATTGAAGACCAATTAGTTAATGTGGAGACAAGTGAAGCTTCTCAGGATCCACCAAATGAATCTTTaaacagagaaaaaaaattatatcgCTGTCTCCATTGTGACATGACTGATAGTAATGCATATTTGTTATTGCTTCATCAAATTAAGTCTCATCCTGgAAAATTGTTAAAATGCAGTGACTGTGACTTTGTGTACAGTGCAGATCAGAGAAACAAGTATAATGAACACTTAAAACAACATGTCAAAGACCACTCTACATCAGTAAGACAGCATGTGTCAGATAGTTCAGTGCCTATGCAGAATTTGGACCTAGAGGACGTTTCGTGTGGACTCAATGTGGATGTACAAAACTCTTCAAAACCTAAAGGTAGCACTAAAGTGGTTTCTAAATCATACGGCCGCAAGAAGAATTCCAATGATAAATTGACTTCACCCAATGGCGTAGTAAGAAACACTGTAAATGCTGAGGTTCATTGGCGTTGTGGCTTTTGTGGAATGAAGGCCAAATCAAAAATGGGTTTGAATAATCATTGCAAGCAAAGACACAAAGAACGTGTTGGAATGGCATTTTCTAGTTCTGACACACTGGAATGCTCCAGATGTAAACTGACTTTTGGAAGTGAAGTTTGGCTTAAAGACCATCTCTGTCACTCCGTCTTTTTGCCAAAAACAGTTCCTTCTCCAAAGCAACTGACTTGCCTCACATGCCCTGAAGTGTTTACTGATGTTAAAGACTTCCGTGAGCACCTCTTGTCGCATACCAATTCCGTCAAGTGCCATATTTGTGGGGCTCATTTCCGATCGCAAGTGCATCTTCAGCCTCATCTTCTAAAGcatgagagaaaaaaataccTGCAGTGCCCATATTGTCCAAGAAGTTTTAAATTAAGGTCCCGGATGAAAATACATCTAAGAACACATACAGGAGAAAGGCCATTTATGTGTGTCAAATGTGGAAAACAATTTTCAACAGATAGTGGTTTCCGCTTACATATGGCTGCACATGAAGGAAAGAAACGATATGTGTGTTCACTGTGTGGTCAAACATTCAACCGTCCATCAAACTTAAGAAGACATGAGACTTCTTGTGGTGGAACTAAATTGCAATGCAGCATATGCAAGGAAAAATTCTCATCCAGAGAAGAAATGCATTGCCACAGAGCCATGCACagtaaagaagaaaaagatgcAGAGCAGACCCAGTTAATCGCTGATGGTACCTCAAAACAGTTTTCTTGCAAAGTTTGTGGGATGAAGTTTGATCGTGTTGTTGAACTGTCACAGCATAGAAAAGAGTCTCACACTGCAGTAGAAGTTGAAGAAGCTAAGAAAGCTGGTCACGTAGATGGTGGAGCTTATGTGTGTCCAAACTGTGGTAAAGAGGTGTACAACAAGAAAAATTATGATAGGCACATGCTTCTCCATACTGGCAACACCCAGTATCAATGTCAGGAATGTTCCAACATCTACTCCACAAAATTTGCTCTCGAGTACCATATGTATACTCACACAGGTGAACGCCCATTTAAGTGCGATTTATGTCCTGAAGGTTTTAAGACCAGGATAAGCCAGAAGATCCACCGAATGAAGCACACTGGTGAAAAGCCTTACAAATGCCGCATCTGTTCAATGGGCTTTATCACAGCAGCAAGTTTGCGTCTCCATCTTGTAACCCATTCAGACTCTCGAATGTTTTCATGCAGTTACTGCCCAGCGACATTCAAGAGAAAAAAAACCCTTGTCACTCACATTCGCATCCACACTGGAGAAAAACCTTATACCTGTAAATTTTGTAATAAACGTTTTACGCAGAAAGGATCATGTTCGCAACACGAGAAGACTCACACAGATATGAAAAATTCAAGAGCAGTAGATAGCGATATGCATGTGACTGTTATTAAAAACTGGAGGAGTGATGATGTTGAATCTTTTGCCCAAGATGAATCAAACAGAATAGACATTCTAGTTGCTCAAGATGGAGGCAATGCTGCCAATAGTGCCCAGTGCGAGGAGGTGCAGCACATGGTTCTCATTCAGCAAGATGTGGACTGTGTCATTGGTGAACCAGATCTGATGGAAATCAGTGAAGATATGGTACTTGTTGGCAAAAAACATGCAATAATTATTGAACAAGATGGCATTTTGGCAGAGACCCCGGTGACAGGATTAAAAGATGCCAATTCAGACCCTCAAATGCCTGTACCTGATGAATAA
Protein Sequence
MDHNTTYACVEYDLGEEQRLEGMCRVCASSSCELTPVFDSSGQSEGIVDLINNHLPILVTPTDLLPITICAACIETLSSIHNLVEVCVKANEKMQQMLQDVEVDFTELESYGVPNEEVCESSFKLVPSVERDEEKELEVNTLIEDQLVNVETSEASQDPPNESLNREKKLYRCLHCDMTDSNAYLLLLHQIKSHPGKLLKCSDCDFVYSADQRNKYNEHLKQHVKDHSTSVRQHVSDSSVPMQNLDLEDVSCGLNVDVQNSSKPKGSTKVVSKSYGRKKNSNDKLTSPNGVVRNTVNAEVHWRCGFCGMKAKSKMGLNNHCKQRHKERVGMAFSSSDTLECSRCKLTFGSEVWLKDHLCHSVFLPKTVPSPKQLTCLTCPEVFTDVKDFREHLLSHTNSVKCHICGAHFRSQVHLQPHLLKHERKKYLQCPYCPRSFKLRSRMKIHLRTHTGERPFMCVKCGKQFSTDSGFRLHMAAHEGKKRYVCSLCGQTFNRPSNLRRHETSCGGTKLQCSICKEKFSSREEMHCHRAMHSKEEKDAEQTQLIADGTSKQFSCKVCGMKFDRVVELSQHRKESHTAVEVEEAKKAGHVDGGAYVCPNCGKEVYNKKNYDRHMLLHTGNTQYQCQECSNIYSTKFALEYHMYTHTGERPFKCDLCPEGFKTRISQKIHRMKHTGEKPYKCRICSMGFITAASLRLHLVTHSDSRMFSCSYCPATFKRKKTLVTHIRIHTGEKPYTCKFCNKRFTQKGSCSQHEKTHTDMKNSRAVDSDMHVTVIKNWRSDDVESFAQDESNRIDILVAQDGGNAANSAQCEEVQHMVLIQQDVDCVIGEPDLMEISEDMVLVGKKHAIIIEQDGILAETPVTGLKDANSDPQMPVPDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-