Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:6597484-6608710[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 1.4e-05 0.00044 20.2 1.0 1 23 282 304 282 304 0.98

2 27 0.00034 0.011 15.8 1.9 1 23 335 358 335 358 0.96

3 27 0.00075 0.024 14.8 1.6 2 23 365 387 364 387 0.97

4 27 0.42 13 6.1 0.1 2 23 483 504 482 504 0.96

5 27 0.092 2.9 8.2 4.3 1 23 529 552 529 552 0.94

6 27 0.11 3.6 7.9 1.3 1 23 594 617 594 617 0.93

7 27 0.2 6.5 7.1 0.3 3 23 625 646 623 646 0.96

8 27 0.078 2.5 8.4 0.2 1 23 746 769 746 769 0.94

9 27 2.6 82 3.6 0.8 1 22 788 809 788 811 0.85

10 27 0.15 4.8 7.5 0.5 2 23 818 841 817 841 0.91

11 27 0.23 7.2 7.0 0.1 2 23 850 872 850 872 0.94

12 27 0.012 0.38 11.0 0.1 1 23 878 901 878 901 0.97

13 27 0.00053 0.017 15.2 2.6 1 23 909 931 909 931 0.97

14 27 0.0061 0.19 11.9 0.8 1 23 972 996 972 996 0.95

15 27 0.00093 0.029 14.5 1.9 2 23 1000 1022 999 1022 0.96

16 27 0.00048 0.015 15.4 2.8 2 23 1029 1051 1028 1051 0.95

17 27 0.051 1.6 9.0 1.1 3 21 1085 1103 1084 1104 0.94

18 27 0.003 0.094 12.9 0.8 2 23 1133 1155 1132 1155 0.95

19 27 1.8 56 4.1 0.0 3 23 1248 1269 1247 1269 0.93

20 27 0.15 4.7 7.5 3.5 1 23 1277 1300 1277 1300 0.96

21 27 0.44 14 6.0 0.1 3 23 1307 1328 1306 1328 0.91

22 27 0.00039 0.012 15.7 0.9 1 23 1473 1496 1473 1496 0.97

23 27 0.28 9 6.7 0.5 1 12 1503 1514 1503 1523 0.87

24 27 0.087 2.8 8.3 0.9 2 23 1628 1650 1627 1650 0.94

25 27 0.00047 0.015 15.4 1.6 1 23 1697 1719 1697 1719 0.95

26 27 0.0082 0.26 11.5 0.0 1 21 1749 1769 1749 1770 0.96

27 27 3 96 3.4 1.0 1 21 1785 1806 1785 1807 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	1.4e-05	0.00044	20.2	1.0	1	23	282	304	282	304	0.98
2	27	0.00034	0.011	15.8	1.9	1	23	335	358	335	358	0.96
3	27	0.00075	0.024	14.8	1.6	2	23	365	387	364	387	0.97
4	27	0.42	13	6.1	0.1	2	23	483	504	482	504	0.96
5	27	0.092	2.9	8.2	4.3	1	23	529	552	529	552	0.94
6	27	0.11	3.6	7.9	1.3	1	23	594	617	594	617	0.93
7	27	0.2	6.5	7.1	0.3	3	23	625	646	623	646	0.96
8	27	0.078	2.5	8.4	0.2	1	23	746	769	746	769	0.94
9	27	2.6	82	3.6	0.8	1	22	788	809	788	811	0.85
10	27	0.15	4.8	7.5	0.5	2	23	818	841	817	841	0.91
11	27	0.23	7.2	7.0	0.1	2	23	850	872	850	872	0.94
12	27	0.012	0.38	11.0	0.1	1	23	878	901	878	901	0.97
13	27	0.00053	0.017	15.2	2.6	1	23	909	931	909	931	0.97
14	27	0.0061	0.19	11.9	0.8	1	23	972	996	972	996	0.95
15	27	0.00093	0.029	14.5	1.9	2	23	1000	1022	999	1022	0.96
16	27	0.00048	0.015	15.4	2.8	2	23	1029	1051	1028	1051	0.95
17	27	0.051	1.6	9.0	1.1	3	21	1085	1103	1084	1104	0.94
18	27	0.003	0.094	12.9	0.8	2	23	1133	1155	1132	1155	0.95
19	27	1.8	56	4.1	0.0	3	23	1248	1269	1247	1269	0.93
20	27	0.15	4.7	7.5	3.5	1	23	1277	1300	1277	1300	0.96
21	27	0.44	14	6.0	0.1	3	23	1307	1328	1306	1328	0.91
22	27	0.00039	0.012	15.7	0.9	1	23	1473	1496	1473	1496	0.97
23	27	0.28	9	6.7	0.5	1	12	1503	1514	1503	1523	0.87
24	27	0.087	2.8	8.3	0.9	2	23	1628	1650	1627	1650	0.94
25	27	0.00047	0.015	15.4	1.6	1	23	1697	1719	1697	1719	0.95
26	27	0.0082	0.26	11.5	0.0	1	21	1749	1769	1749	1770	0.96
27	27	3	96	3.4	1.0	1	21	1785	1806	1785	1807	0.92

Sequence Information

Coding Sequence: ATGAGTAGAATCGATAGCCGGGTGGACAGCTTTAACAGCTTGTGTCGTCTCTGTGCGACTTACGATGCTGTTAAATTGGAAATAttcggggaggaggggaaggagaggaGCTTGGTGGAGAAGATCGAGACCTGCCTACCATTCCAGATCTCCCAAGATGATTCCCTTCCCAAATCTCTGTGTTACCGATGCATGTACAATTTAGAAAACTTCTATGATTTTCGAATGGGGTGTGTTAATGCTGTGGCTCTCTTAGAGAGCTGCCTCCACCCAGATGGAGGGAAACATTTGGATAAAGCTTCAGCTGACAAGAGAGCAAAAATTATGAAACAAATGGGAAAGGATACCCGGAAAGATAAAGAAGCATCTATGCCACAGCTTGAGCCGGAGGTAAGCAGTACAACACTCTCATCTTTTGCTTTGGTCTGTGCCTGTTCTCTTTTAATTTGTTACATGTCATCTGTTTTTCAGATTCCATTATCAGCTTCAGTTAAACAGGAATCAAATGACATTCCAAGAGGGAAGAGTAGTGTACCTAATGAGAAGCAACCCTCAAAGTCTGACTCAGGTATGCCCAAACTTCCATCTGCAGTTGAAGAGGAGAGTGGCAATACTGATGATGATGTAGAAGAAGTTGAGGATGATGAGAATGTTGAGGAGGAGGATGATGaagatgacgatgatgatgaagacGAAAAAGTTATTGATATCGATCCTGCTGATTATCTGGAGTCCAATGTGGCTGTTGAAATTGAAGAGTCCCAGCAATCCGGCACCCTGTCAAAaaAAATCTCTTCTGCATCTCTAAGTTCTACTCAAAAGTCTTCTGAACCATGTGAACTATTTACATGCAAAGTTTGTGGAAAAGCTTTGTCCAGTAAGGGTCATCTGTCCTTGCATCTTCGTATTCATGGAGATGATCCTTCGGATAGTCATTGTCTCAACAGTAGCTCCACCACACCAAGAGGTAATTCCTCTCAAGGCTCTCAGTACTGTCGCCCATATCGGTGCGATCTGTGCAACAAGAGCTATTCTTCATCGAAACATCTGTGGGGACATGTTAGTTCAAATCACAGAGGTGATCCTGCTGTGACTTGTCCAGAGTGCCATCGGCTGTTTTCTTCAGTCAATAATCTAGAAGAACATAAGAGAACAAAGCATGGTGAAAACATTGGCGAGGGAGCTTCAGATGAGGGGGCTGAAATGGACTACATTGTTTCTCCAAAAACTCCAAGTGGCAGATCTAAACAAACCAGTGATGATGATGGTCTCTCTCCTAAAAAGAGGTCTTACAGTAAGAATGATTCAGATAGCGAGTTCAATCAGAATGGTAAGAGGCCTTCCTCAGATGATGCTGGAAACCGAAGAAAGCGTTCTAAGCCAAGGCGAATTGCCCGCTCTCATAGTTCTGAGTCCCTGGCAGaagaaggggataacgaACCACTCCAATGTGTTTTGTGCCCTGACAAGTTCCCAGATGTGGCCCAACTAATGGAACACACAAAGAAGCATGAGGAGGAACATGAGGCAGAGACTCAAGCCATCGCAGAGGCTCAGGGTCGTTCCATGATTAACTCTGATAGTCACTCTTGCTTCCTATGTGAGCAAAACTTCACCCTTAGGAGCTCTCTTCACCGCCACCTTCTAAATGAACATGGCATTGATTCTGAGTTAATTGATCAGAAAATGGAGGTTAACATCAAGACAGAGTATATTGATGGAGATGATGAGCATGATCATCACATGCTTGCTGAGAGCATGCTGGAGTCTGAAACGGTGTTCTGCTGTGAGGCCTGCATTCGTGAATTTACAGACCGCTCCAGTCTTTGGTTACATATGTTGTACACTCACAAAgacgcagcagcaacagcatgTGGCCTTTGTTTAAAGGTGTGTGGAGACTTGACAAGTTTGGCATCCCATATTCAGACCAGTCACTCCACAAGTCAGTTGCTTGTTGAAAAAAGAAGATACAGCTGCTCAATATGTATGAGGCAACACGATTCTCGCAAAAAACTGTTGGCGCATGTTCTGATCCATGAAATTGGATCCTCAAAACCAGAGGACCTCATAATTCTGAACTCTGATCTGTATCAGGCTGAGAATCAAGTTGATATTGATAACGAAGAACAGGATAGCCATGATACTTCATTTACTATTAATCCTGCTAACATCTCGGCAAGTTCAGGGAACAATGCTGCAACAGCAGCTGCATCTGTTGCAGCAAACTCTCCATTTGCTTGCCAGATTTGCTTAAAAATCTTTCCCAACGAGGAAAAAATGGTCAAGCACAAGCAAAACGCCCATCGACAAGAAGCTTCGGTGCATGCTGCTACTGGAGTTGGCACATACCATCTTTTCTTCCGATGCGAAATTTGTGGTGTGTCTCATCAAAGTAAATCTGATCGATGGAAACATGTTTATGAGGTACATGGTGGTGATCCCAGTGTAACATGCACTCGTAGTAGCTGTGGTAAAGTATTCCCCTCGGCTGAATTGAATCAGGAGCATGTCAACCACCACAAAGTTCAAGGAACAACTCCCAACACCTGCGAGATTTGTGGAAAGTTGTGGAATTCTCGTGTGGACTATTGGAAGCATATGATGGGTGTGCATGCTGAGGTAGTACCCTACACTTGTGGAGTTTGCCTCAAGGTGCTGCCTGACCTGTATCAACTTAAGGAGCATGTCAAAATTCGGCACTATCCTTTGACTGGAGGCGATTACTGCTGTGATATTTGTGGGCGGCCATACTCAAATAGGTCCAAAATGTCCCGGCATCGTACAATACATTTCTCTCTACCCGGTGAAGATGATGTTGAAACACCAGTTGAAGATGACACACCGACTAAAAAACCAGTGGCTGTCAAAAGCGAACCAGTGGAAACTTCAGTGAAGAGCAAAGGAGGAAACTATCACTGTGATGGGTGCCCAAATCGCACTTTCTCATCTCGAGAAGAATTGATTCAGCACCGAAGGGCTGATCATGGAATGCTCACATGTGATCTTTGTGACAAATTTTATGGTCGCACATCACATTTGTGGAAGCACGTAAATAAGATGCATAGGGGGCATCCTTCCGTCACATGTACGCACTGTGGGAAAATATCAGCATCTAAATCTCACCTGCGCAGTCACGTCCTTAAACTGCATCGTCCTGGTGTTCTTGGTCATGTGGACTATGCAGCTACGGCTCCACCAACTCCACCAACATCACAATCAAAGTCTGAGCGTGTATTAGGACCACAGGcctgcccacagtgtgccaaaGTGTTCTGCAACCGCTATAGGATGTTGCGTCACCTCAAAAGTTGCAGAACAACAGCCTCCACTAAGGCACATCATTTATCTGGTGGTGATTCACCAAACTGGGATATTGTACCAAAAGGACCTGTCTCTTGTCAGTCATGCTCTAAGATATTTACAACAAGGAAGGCCTTGAGAGAACATGAACGCAATATTCATGCAACTTATGACTGCGAGCTGTGTGGTTCTGTTGGCTTGCCAAGCAAGACAGCTATGCTTGAACATGTGATGATAGCTCATAGAGAACAATTAACATGTGCCTTTGAGGGATGTGGTGTTGTCCTGAGGTGTGGTGCAGATCGAGAAAAACATGAGAAGCAACATAAAGAAAACCGCACTCCTCCAACATGCCGGAAATGTGGAGAGATTCATGATAGTAGGGTCCGCTTGAGAAAGCATTTGCTGACACATCACAAGGTTGCTTCAAGTTCCATTTGCTGTGTTTGCATAGCATCCTTCCCAGTACCTGAAGACCTTCAAGCCCATGTTAACTCAGAACACCCCACTATTGTCAGCCGTGCTCACACATGTCAAGTGTGTGCCAAAACTTGTGGCACACGTTCTCGCCTTGTGAAACATGTCAAAAATGTTCATGATGGAGCTGACCGGCTGTGCACTGTCTGCTTGGGATATTTCAAGAGTCCAGAGGAACTGCAGAAGCATGTTGAAGAAAAGCACCTgaaggaagaagaagatgccGAAGAGGAGAGTGATGACTCATCTTCCGATGACGAAAATGAGAAAGAGGATAAAAATCACATTGAGgaagaagatgatgatgatgacgacgatgatgacgacgatgacgacgacgaagacAATGACGAGGGGGACAGTGATGGAGATGATGAGGATGAAGAAGAGGAGAATGATggtgaagatgaagaagaatcTCAAGAATCGCACTCAGAAGAAAAGTCTGTTGAAGAAAACTCAAAAGCTGATAGTGACATGAGTGAGCTTGCCATGAATGGAGTGGACTCAAAACCAGTGCATAAGCGGATTAATAATAGGAATGTGGACTCTCAAGCATCTGAAGTCTCATCGGGTTCAGATGAGGAAGTTGCCACCCAACTTTTTACAAATCCAGAAGGGAGACCAAGGAGGTCATACAAGTGCAATCTTTGTAAAGAAACATTCCGGTTGCCAGCACTTCTCATGCAACATCAAAATCAGAGGCATCGATCAAACTCCACCCCATTCCAGTGTGAATCGTGTGATAAGAAATTTTCCAATGAACTGATTTATTCAAAGCATGTTAATTTATGCAAACAAGGCAGGAGTTCGATATTGCAAAAGACCCTAGAATCAGGTAAAATGGCTTTCAGAGAAGAGTCTAAAGAAGTGGCACAGTTTGCTGATATGGCAGGGTTCAATGGTCACTTCCTTGAAGGCGGTGATGATGGTGGCAAAGATGCTGCTGGGAGTTCGTCATCGCGGCCTAACAGGGTTCAGCGCAAAGTATATGGTGAAAATGAAGGACCTATTCACTGCGAGCTTTGCAACAAGGTGTGGCCTTCATTAAGGCAGCAGTGGCAACATCTCATACGAACACATCGAGAAGCTGCTGCTACAACATGTGGAGTGTGTCTTGAGATATGCACAGATTATTCATCCCTGAAGACCCACCTAAATGAAATGCATCCTGATACATGGGAAGGCGAAGGCAAAAATTTTACGTGTAGAGTTTGTGGTCGCTACCACAATGCCCGATCCAAGCTTGAGCTACATAACAGTATTCATCTTGGACTTGAAAATGAATTAGCTCAATCCTCTACTTTGCACAGTTGTCCAACTTGTTTCAAAGCATTCTCAACAGAAGATGAACTTAAACAGCACAGTGTTACTCACCAGCAATCTCGCAGACCCAAACCAGAAGCAGAAGAGAGTGATAGCGAGTCATCAGATGATTCTGACGATGGTGACGATATGGAATTATTTGTATGTCCCAAGTGCTCAATGGTGTTCCAAGCCAAAGATGCTCTTGCTAAACACATCAAAGCAAATTGTGAACATTCTTTAGGTCAATCCTCTAAACAGGAGACATTCTCATGTGAGCGATGCAACACGGCCACCTTCTCTTCGTACTTAGATTTGACAAAACATTACAAACAGTGTTCAGAAAGGAATGAAACAGAAACTAAACCTGTTGGCAAGGCAAAGGAAGAATCTGACCAATCAAATGGGGTTGATGCAAATGAAGATAGTTCTGATAGTAGTTCCAGCAGCAGATCAGATGGAAGTAGTAGCAGTAGTAGTTCCAGTAGTTCGAGTAGCAGCTCGAGCAGTTCCGATGACGACGACTCAGATGAGGCAGAAGAAGGCCAGGCTGGTGGTGGGGACGATGACTCAGATGATGAGAAAGCTGAAGGTTCTCTCTCATCATAG
Protein Sequence: MSRIDSRVDSFNSLCRLCATYDAVKLEIFGEEGKERSLVEKIETCLPFQISQDDSLPKSLCYRCMYNLENFYDFRMGCVNAVALLESCLHPDGGKHLDKASADKRAKIMKQMGKDTRKDKEASMPQLEPEVSSTTLSSFALVCACSLLICYMSSVFQIPLSASVKQESNDIPRGKSSVPNEKQPSKSDSGMPKLPSAVEEESGNTDDDVEEVEDDENVEEEDDEDDDDDEDEKVIDIDPADYLESNVAVEIEESQQSGTLSKKISSASLSSTQKSSEPCELFTCKVCGKALSSKGHLSLHLRIHGDDPSDSHCLNSSSTTPRGNSSQGSQYCRPYRCDLCNKSYSSSKHLWGHVSSNHRGDPAVTCPECHRLFSSVNNLEEHKRTKHGENIGEGASDEGAEMDYIVSPKTPSGRSKQTSDDDGLSPKKRSYSKNDSDSEFNQNGKRPSSDDAGNRRKRSKPRRIARSHSSESLAEEGDNEPLQCVLCPDKFPDVAQLMEHTKKHEEEHEAETQAIAEAQGRSMINSDSHSCFLCEQNFTLRSSLHRHLLNEHGIDSELIDQKMEVNIKTEYIDGDDEHDHHMLAESMLESETVFCCEACIREFTDRSSLWLHMLYTHKDAAATACGLCLKVCGDLTSLASHIQTSHSTSQLLVEKRRYSCSICMRQHDSRKKLLAHVLIHEIGSSKPEDLIILNSDLYQAENQVDIDNEEQDSHDTSFTINPANISASSGNNAATAAASVAANSPFACQICLKIFPNEEKMVKHKQNAHRQEASVHAATGVGTYHLFFRCEICGVSHQSKSDRWKHVYEVHGGDPSVTCTRSSCGKVFPSAELNQEHVNHHKVQGTTPNTCEICGKLWNSRVDYWKHMMGVHAEVVPYTCGVCLKVLPDLYQLKEHVKIRHYPLTGGDYCCDICGRPYSNRSKMSRHRTIHFSLPGEDDVETPVEDDTPTKKPVAVKSEPVETSVKSKGGNYHCDGCPNRTFSSREELIQHRRADHGMLTCDLCDKFYGRTSHLWKHVNKMHRGHPSVTCTHCGKISASKSHLRSHVLKLHRPGVLGHVDYAATAPPTPPTSQSKSERVLGPQACPQCAKVFCNRYRMLRHLKSCRTTASTKAHHLSGGDSPNWDIVPKGPVSCQSCSKIFTTRKALREHERNIHATYDCELCGSVGLPSKTAMLEHVMIAHREQLTCAFEGCGVVLRCGADREKHEKQHKENRTPPTCRKCGEIHDSRVRLRKHLLTHHKVASSSICCVCIASFPVPEDLQAHVNSEHPTIVSRAHTCQVCAKTCGTRSRLVKHVKNVHDGADRLCTVCLGYFKSPEELQKHVEEKHLKEEEDAEEESDDSSSDDENEKEDKNHIEEEDDDDDDDDDDDDDDEDNDEGDSDGDDEDEEEENDGEDEEESQESHSEEKSVEENSKADSDMSELAMNGVDSKPVHKRINNRNVDSQASEVSSGSDEEVATQLFTNPEGRPRRSYKCNLCKETFRLPALLMQHQNQRHRSNSTPFQCESCDKKFSNELIYSKHVNLCKQGRSSILQKTLESGKMAFREESKEVAQFADMAGFNGHFLEGGDDGGKDAAGSSSSRPNRVQRKVYGENEGPIHCELCNKVWPSLRQQWQHLIRTHREAAATTCGVCLEICTDYSSLKTHLNEMHPDTWEGEGKNFTCRVCGRYHNARSKLELHNSIHLGLENELAQSSTLHSCPTCFKAFSTEDELKQHSVTHQQSRRPKPEAEESDSESSDDSDDGDDMELFVCPKCSMVFQAKDALAKHIKANCEHSLGQSSKQETFSCERCNTATFSSYLDLTKHYKQCSERNETETKPVGKAKEESDQSNGVDANEDSSDSSSSSRSDGSSSSSSSSSSSSSSSSSDDDDSDEAEEGQAGGGDDDSDDEKAEGSLSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -