Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:5481005-5487343[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00086 0.027 14.6 4.1 1 23 225 247 225 247 0.97

2 12 2.6e-05 0.00084 19.3 1.5 1 23 253 275 253 275 0.98

3 12 0.001 0.033 14.3 5.6 1 23 281 304 281 304 0.96

4 12 0.02 0.65 10.3 4.7 1 21 310 330 310 332 0.95

5 12 0.21 6.7 7.1 3.3 1 21 367 387 367 389 0.95

6 12 0.00027 0.0084 16.2 1.9 1 23 395 417 395 417 0.99

7 12 2.6e-05 0.00084 19.3 0.6 1 23 423 445 423 445 0.98

8 12 0.00072 0.023 14.8 1.5 1 23 462 485 462 485 0.97

9 12 6.5e-05 0.0021 18.1 2.5 2 23 492 513 491 513 0.97

10 12 0.00026 0.0084 16.2 0.3 1 23 519 541 519 541 0.99

11 12 2e-06 6.3e-05 22.9 2.3 1 23 547 570 547 570 0.97

12 12 2.9e-08 9.1e-07 28.7 1.4 1 23 584 606 584 606 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00086	0.027	14.6	4.1	1	23	225	247	225	247	0.97
2	12	2.6e-05	0.00084	19.3	1.5	1	23	253	275	253	275	0.98
3	12	0.001	0.033	14.3	5.6	1	23	281	304	281	304	0.96
4	12	0.02	0.65	10.3	4.7	1	21	310	330	310	332	0.95
5	12	0.21	6.7	7.1	3.3	1	21	367	387	367	389	0.95
6	12	0.00027	0.0084	16.2	1.9	1	23	395	417	395	417	0.99
7	12	2.6e-05	0.00084	19.3	0.6	1	23	423	445	423	445	0.98
8	12	0.00072	0.023	14.8	1.5	1	23	462	485	462	485	0.97
9	12	6.5e-05	0.0021	18.1	2.5	2	23	492	513	491	513	0.97
10	12	0.00026	0.0084	16.2	0.3	1	23	519	541	519	541	0.99
11	12	2e-06	6.3e-05	22.9	2.3	1	23	547	570	547	570	0.97
12	12	2.9e-08	9.1e-07	28.7	1.4	1	23	584	606	584	606	0.97

Sequence Information

Coding Sequence: ATGAGTGCCCTCAAGGACAAGAAAACAACGCAAATAAAGCTTGAAGCAACTTCAAGTGAGACCATCACTGACATTCAGAACTACCTAGACAATTTTAACAAAGAAATTCAAACTGGTGATGGCACTACCACTATTCAGCCTCTTTCAGATGTTCAGCAATTGATCACTGACTCTGACAGTGCCAATGAAGGTACCTACTTTATGGACGAAAATGGACAATATTACTTTCAGTCAAATCCAAGTGAGACTCCAGTCCTTGTTTCAAATATTCCAAatgctgctcctgctgcaaCTAATAATCAGACAACTTATGTTGCAATGCAATCCCAAGGAAATCAAAACCAAGCAAGCACAGTTCAAACTATCCAAACAGTTCAAGATGGGCAACGCATGATAATAAACCCCGGTGATTCATATCAAACAGTCACCATTGTCCCATCTGATACAAATCCTGGCGAAGTGAGCTATGTACTTATAGTGCAACAGCCTGAAGATGACAAGGATGGAGAAGAAGATGAGGACGAAGAGAAAAATGATGATCAAGACCTCACTGTTTATGACTTTGATGAAGGGGAGGATGGTGGACCTGGACCTTTGgAATCTGGAGATGAAGACGACAAAACCAAAATTGTGAAAATACTGCCAAAGAAATCTCAGACTGTAACCCAAGCTCACATGTGCAATTACTGCAATTATACAAGTCCTAAGAGGTACCTCCTGTCACGCCATATGAAGTCCCATTCTGAGGAACGGCCTCATAAATGCAGTGTGTGTGAAAGAGGTTTTAAAACCTTAGCATCTCTTCAAAACCATGTGAATACTCACACGGGTACCAAACCACACCGGTGTAAATTTTGTGACAGCTGCTTCACAACATCAGGTGAACTTGTAAGACATGTTCGGTATAGACACACACTCGAGAAACCGCATAGATGTAACGACTGTGATTACACTAGTGTGGAATTGAGTAAATTGAAGCGGCACTTGCGATGTCACACTGGCGAGCGCCCTTATCAGGTGAGGCCCTTTATGTTTGCATTGATTTTCACAGGTGAACTTGTTAGGCATGTTCGGTACAAACATACCCATGAGAAACCCCACAAATGTAGTGTTTGTGATTACGCCAGCGTGGAACTTAGTAAAATGAGGAACCACATGAGATGCCATACAGGTGAAAGACCGTATCAGTGTCCTCATTGCACATATGCAAGCCCTGATACATTCAAGCTGAAGCGCCACCTTCGAATTCACACCGGCGAGAAGCCATATGAATGTGATTTTTGCCGTGCAAGATTCACTCAGTCGAACAGTTTGAAAGCACACATGTTGATACATAGAGGTGATCCAAATTTCTCTTCTGAAGAAGTGGGAGATAAACCCATCTACAGATGTGAGCTTTGCCCAACTACGTGTGGACGGAAAACTGATTTACGCATCCATGTTCAAAAACTTCACACTTCTGACAAACCTTTGAAATGTAAGCGCTGTGGCAAAACGTTCCCTGACCGATACACTTATAAGGTTCACAATAAAACTCATGAGGGAGAAAAGTGTTACAAGTGTGACTTGTGCCCTTATGCATCAATATCAGCAAGACATTTGGAATCTCATATGTTAATACACACAGACCAAAAGCCTTATCAGTGTGAAATGTGTGATCAGTCTTTCCGGCAAAAGCAGTTACTTAAGAGACATCAGAATCTTTACCACAACCCACAGTATGTACCACCATGCCCACGAGAGAAGACACACGAATGTCCTGAGTGTGGACGGACATTCCGCCACAAGGGCAATTTGATCCGTCACATGGCTGTTCATGACCCTGATGCAACCACACAAGAAAAGGCCATGGCTCTGAAACTTGGACGACAGAAAAAGATTCAAATTATTGATGGCCAGCAGGTGGAAGTGATGCCCGAAGATGAAATggaagatgaagaagatgaTGAGGATGAAGACAGTGGTGGTCAAGGAATGATGGCTGTCCAAGGCTCCGATGGGCAACAGTATGTGGTTTTAGAAGTTATTCAACTACAAGATGGTGATGGTCAGGAGCAGGCTTTGGCTGTCGTCACCGACAATATGACTGGTGTTCACAATTCTGTTGGACATGACAGAGATGATGACAGTGACAGTGGAGAGCTCATTACAGGACATCATCCCTCATTGACGAACGAACAAATTCTTCAAGTTCAAAAGATGGAAGAAACTAAAGATGGGATAACTCTGAAGAGAGTTGTAGATCCCAAGAGTGACATGCAAAATTGCTTCGGGTTTGATgaggatgatgatgatgccgATATGGAAATAGAAGGTAGTAAAATTCATATATTGCAATCAATTACTTAA
Protein Sequence: MSALKDKKTTQIKLEATSSETITDIQNYLDNFNKEIQTGDGTTTIQPLSDVQQLITDSDSANEGTYFMDENGQYYFQSNPSETPVLVSNIPNAAPAATNNQTTYVAMQSQGNQNQASTVQTIQTVQDGQRMIINPGDSYQTVTIVPSDTNPGEVSYVLIVQQPEDDKDGEEDEDEEKNDDQDLTVYDFDEGEDGGPGPLESGDEDDKTKIVKILPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSCFTTSGELVRHVRYRHTLEKPHRCNDCDYTSVELSKLKRHLRCHTGERPYQVRPFMFALIFTGELVRHVRYKHTHEKPHKCSVCDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCRARFTQSNSLKAHMLIHRGDPNFSSEEVGDKPIYRCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYTYKVHNKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCEMCDQSFRQKQLLKRHQNLYHNPQYVPPCPREKTHECPECGRTFRHKGNLIRHMAVHDPDATTQEKAMALKLGRQKKIQIIDGQQVEVMPEDEMEDEEDDEDEDSGGQGMMAVQGSDGQQYVVLEVIQLQDGDGQEQALAVVTDNMTGVHNSVGHDRDDDSDSGELITGHHPSLTNEQILQVQKMEETKDGITLKRVVDPKSDMQNCFGFDEDDDDADMEIEGSKIHILQSIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -