Tpal012381.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:704782-709716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.069 2.2 8.6 0.3 2 23 564 586 563 586 0.96 2 15 0.001 0.033 14.3 0.4 1 23 592 615 592 615 0.97 3 15 0.00027 0.0086 16.2 0.7 3 23 625 645 624 645 0.97 4 15 0.00054 0.017 15.2 0.5 1 23 653 675 653 675 0.95 5 15 0.0044 0.14 12.4 2.0 1 23 683 705 683 705 0.97 6 15 3.3e-05 0.001 19.0 0.7 1 23 710 732 710 732 0.97 7 15 0.00063 0.02 15.0 8.1 1 23 740 762 740 762 0.98 8 15 1.5 47 4.4 1.3 1 23 768 791 768 791 0.93 9 15 3.3e-05 0.001 19.0 4.3 1 23 830 853 830 853 0.96 10 15 0.00087 0.028 14.6 4.0 1 23 860 882 860 882 0.98 11 15 0.00048 0.015 15.4 0.7 3 23 890 910 888 910 0.96 12 15 0.00014 0.0044 17.1 0.3 1 23 916 938 916 938 0.97 13 15 0.00082 0.026 14.6 3.2 2 21 949 968 948 970 0.92 14 15 3.2e-05 0.001 19.1 2.5 1 23 975 997 975 997 0.99 15 15 0.0028 0.088 13.0 3.3 1 23 1003 1026 1003 1026 0.98
Sequence Information
- Coding Sequence
- ATGGGGACTTCACACGTAATCGTGAACAAGTTCCTGGGATCCTTTGGGGACGTCATTAATATGATGATGGATTTGGGCCTCCTTTCGTCTCATGTGTTTTCGTATTCTGTGGCGCAAGACATGTCCAATATGCTTGTGGAAGAGAGACATTTACAAGCGTATGTTAAGTTCTTGGAAGAAGCCAAGAACATGCTTAATCACTTAAGCAATCAAATGCCCCACTGTAGGAATAAAGAGGGGTTCGGTGATTTGGTTCTTGGATTTGAAAACCGACAAAACATTGTATCTGATGGTATCAGTGTAAATGGCCCTTGTAACTCAAGTGTGAAGCCACATGAGAATTCTTTCTCTTCATCTTGTGGAACTACAACCTATTCCCAGATGAAAAATGCTCCCTCTCTTGAAGTACCATTCAACTCTGCTACACAGCAGCCATATGGGAATATTAATGAATCTAGATGCGAGATTCCATCAGGAAGATTTTCTCCACTGAATGAGGCCGAATATACTGCTGCTGATACACTGTCTCATAGCCGGCACTACAGTGTACCTGATAATAGCTCTTGTTTTGATATGTCTGCTTCATCAGTAGCCCATGAAAACTCTTTGTCATCTCATGGTGCCACATTCAATCTTCAAAGTCACATGGCAGTGAACAGCCACTTCCAACCAAGCTGTGAAACAGCTTTTGATGGGTCTGCAAATCAAATGATGCGCTTCCGTTCATGCAACGGTGACACATCTCTGAAACAATTTTCTTCATCAGCAGAATCTCAGAGTCATGAATCACAGTTTGTACCTCATGACAAGAGCGAAGATTTCACCTCAAAACCAAGTTGTGAATTTGCCCAACCTAATGATACCAGGGATTCACACCATTATACCTCTCCAAGAGGGCATTTTTCTCCAACCTCAGAATCAAACTGTGATACTATGTATGCCTCACGATGTGAAACAACTCAAGATGCTCATTTCAGCTGTGATACATCCTATGAAACTTCTAACCATTCAGGACATGGGATGCATACTACAAACGTACCTTTCCAAACATCAAGTGAGCAAGCTCTTAATCCTCATTACTCTCATCCTACTATCTCAACTGAAACAAGGTTTGAGGATCCTATTAAAAATCAACACAGTTCTGCATTTTCTATGGTAAATGTAATGAATACAAATCAATATCCGCCTTGCCAAAGCGGCTCCGAAAAAACCCAATTTATTACAAATGAGGATGCGCAGACTAAAATGCATTATCCATCACGCAATGACATGTGCGACTCGTCATTCACTCAGCTGAATGGCAATACAAGTTTTGTTGGGATGAATGATGTTTCTTGTAACACCCATATAACGCCAAGACCAGTGAATGAAAATCGATTCTCACATGTATGGAATGGATTAAGTGATACTGAGGAAAGCTTTGATCAAAGTTCTCCAGTGCCAGCCTCCAACCAGTCCCAGGAAAGCACAGAGTTTGGTGACTTGCAAATGGCTTTTGTGAATCAAGTTGACAAAGACATCTCAAGTGCCGGTTTCAGAAGGAGTTCTGGAGAGAAAGATGGTTTAGGCTCATCTGGAGAAAGCAGCTTTTCATTGCTGCTAGGAACAAAAGATGTAAACAGTTCCTCTGATGTAAACAAGAAAAAGCTATCAGTTTTAGAGGGAATCAAGCAGGATGGAAATAAATGGAAGTGCACCATATGTGCCAGATTCTTCATAGCTCGTGTGAACATTGAACGTCATTTTAGGGTCCAGCATTTAGGTGAAAAAGCCTTCCCTTGTAGTCTTTGTAACAAAGGATTTTCTAGCAAAATACGTTTGGATGCTCATCTTATGCGACAACACAACTTAAATTGTGAATCAGCTAATCCTTGTACTGTCTGCGGGAAACTGTTTAACACTAAAACAGCTCTGAAAACTCACAGCTTGACTCATGTGGATGAAAGTGAAAAACCGTTTGCTTGCAATATATGTAACAAGAGGTTTTCACAAAAAGTTGTTTTAGATACTCATCTTGTTCGTCATGAGGGGCCAGCATCTTACAAATTCCAGTGTAAAATATGCAACAACAGCTTTCCAACAAAGGCAAAACTGCAATTTCATTGGAAGAAGCACGAAAGCACACAATTCCCCTGCAAAGAATGCCCAAAGcaattttcaaatttatcTATGTTGCATGCTCACGAGGCAACCCATATTGACTATGACAAACGTCCGTACCGATGTACAAAATGCCCAAAGACATTTACAACCAAGCACAAATTGCATTTGCACAGTCAGACTCATTTAACAGACGGCAAATACCCTTGTTCTGAGTGCTCAGCTGTCTTTAAATGTAGAGCAACCATAGCTGCACATTTCAGAAAAAAGCATGACAAAACTGAAGGACAGGAGTGCTCTAATTCTGATGCTTCATCTACCTTTTCTATTACACAAGCTCCTCCTCAACTTGATTCCTCTGATAAAATTGTTTCAAGTTCTCCTCTATTTAAATGCACAGTTTGTCCAAAAGAGTTTAACCGCAAGTTTAACTTACGTGAACATATGACCAACTGTCATCAAGACATGCCACCTCGATTTTCCTGTGAACATTGCTTAAAGCGATTTAAATCAAAAAATAAACTAAGATTACATGTTGCAACTCACACAGAGGAACCAAACCTTGCTTGTCGAACCTGTGGTAAACGATTCTATCGCACAGACTTGCTTCGGACTCATGAGGCCACTCATACTGGAAATAAACCTTTTTCTTGTGAAGTGTGTGCTAGAAGATTTGCTACTCAGTCCATGTTAAGATCACACCAGGTCATTCATCAACCTCCTCCTGAGATAGCAGCCCAGTTGCCCTGCCCAACATGTGGTAAGAGattcaaaaacaaaaagactCTTTCCACGCATGCAAAATGTCACGCCGACCGCCAATTCAAATGTGGAACATGTGGCAAACAGTTTGCTCGGAAGGTTCATTATGATGGCCACATGCGCACCCATAGTGCAGACCGGCCTTATTCCTGCACTGTGTGTAACCGAACATATAGAGAACGTAAACACAGAGCTGATCATATGCGACGCGTGCATCCTAATGAAGTTCTTGGCGGTGGGGAATTGACTTTGCAGAAATTGATAGATTCCATTACTACGGACGATACTATGGATGGATCTACTGGTGGGGGAGACTTTGAGCCAGATGTAAACTCAGATGCTCTTGCATCTTTGACTGAGTTATCCAACTCTGGTGTGGGCCATCTGCTGGAAGACTCTTCTCAAAGAAATGCTGAATCTCAAGTTGATGAAACCAGCCAATCTCAGGGTAGCCAATTGAATTGTCATTTTGGCTCCCAATCTCAAAATGTAACTCTTGAATCCCAAGTGGACTGTGGTAATTCGAGTGCTCAGGTTAATCACATGAATCAATCTTATTCGTCTCAGACACATGAAGTAGACCTCGACAACCAAGTCAATCATATAGCAGATTCATTTACGACTCAGTCAGAAAGCCTTTCAATTCTGCAAAATCCATTTCATCATTTGAAGGCTCCAACAAATGACTCAAATCCGTTCAGGTGTTCTGGTAACGGAGGTTTGAGTCCTTTGCCGGAGCTTTCGGATCATCTTCAATCAATGGGCGCTCATACTTCTCTCCATCCAGTGCTCCACGACCATTTTTCTAATAATGAGGATAAAATTATAAAACAGTTGTGA
- Protein Sequence
- MGTSHVIVNKFLGSFGDVINMMMDLGLLSSHVFSYSVAQDMSNMLVEERHLQAYVKFLEEAKNMLNHLSNQMPHCRNKEGFGDLVLGFENRQNIVSDGISVNGPCNSSVKPHENSFSSSCGTTTYSQMKNAPSLEVPFNSATQQPYGNINESRCEIPSGRFSPLNEAEYTAADTLSHSRHYSVPDNSSCFDMSASSVAHENSLSSHGATFNLQSHMAVNSHFQPSCETAFDGSANQMMRFRSCNGDTSLKQFSSSAESQSHESQFVPHDKSEDFTSKPSCEFAQPNDTRDSHHYTSPRGHFSPTSESNCDTMYASRCETTQDAHFSCDTSYETSNHSGHGMHTTNVPFQTSSEQALNPHYSHPTISTETRFEDPIKNQHSSAFSMVNVMNTNQYPPCQSGSEKTQFITNEDAQTKMHYPSRNDMCDSSFTQLNGNTSFVGMNDVSCNTHITPRPVNENRFSHVWNGLSDTEESFDQSSPVPASNQSQESTEFGDLQMAFVNQVDKDISSAGFRRSSGEKDGLGSSGESSFSLLLGTKDVNSSSDVNKKKLSVLEGIKQDGNKWKCTICARFFIARVNIERHFRVQHLGEKAFPCSLCNKGFSSKIRLDAHLMRQHNLNCESANPCTVCGKLFNTKTALKTHSLTHVDESEKPFACNICNKRFSQKVVLDTHLVRHEGPASYKFQCKICNNSFPTKAKLQFHWKKHESTQFPCKECPKQFSNLSMLHAHEATHIDYDKRPYRCTKCPKTFTTKHKLHLHSQTHLTDGKYPCSECSAVFKCRATIAAHFRKKHDKTEGQECSNSDASSTFSITQAPPQLDSSDKIVSSSPLFKCTVCPKEFNRKFNLREHMTNCHQDMPPRFSCEHCLKRFKSKNKLRLHVATHTEEPNLACRTCGKRFYRTDLLRTHEATHTGNKPFSCEVCARRFATQSMLRSHQVIHQPPPEIAAQLPCPTCGKRFKNKKTLSTHAKCHADRQFKCGTCGKQFARKVHYDGHMRTHSADRPYSCTVCNRTYRERKHRADHMRRVHPNEVLGGGELTLQKLIDSITTDDTMDGSTGGGDFEPDVNSDALASLTELSNSGVGHLLEDSSQRNAESQVDETSQSQGSQLNCHFGSQSQNVTLESQVDCGNSSAQVNHMNQSYSSQTHEVDLDNQVNHIADSFTTQSESLSILQNPFHHLKAPTNDSNPFRCSGNGGLSPLPELSDHLQSMGAHTSLHPVLHDHFSNNEDKIIKQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -