Tpal001028.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:9898542-9908718[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.65 21 5.5 0.8 2 23 1697 1718 1696 1718 0.95 2 17 9e-05 0.0029 17.7 0.5 2 23 1726 1748 1725 1748 0.96 3 17 0.18 5.9 7.2 4.4 1 23 1789 1811 1789 1811 0.98 4 17 0.008 0.25 11.5 5.6 1 23 1824 1846 1824 1846 0.98 5 17 0.071 2.2 8.6 0.3 1 23 1855 1877 1855 1877 0.98 6 17 6.2e-05 0.002 18.2 5.6 1 23 1883 1906 1883 1906 0.98 7 17 0.01 0.32 11.2 3.5 1 23 1911 1933 1911 1933 0.98 8 17 7.2e-06 0.00023 21.1 0.4 1 23 1939 1961 1939 1961 0.97 9 17 1.4e-05 0.00045 20.2 1.4 1 23 1967 1989 1967 1989 0.99 10 17 0.36 11 6.3 2.1 1 23 1997 2019 1997 2019 0.97 11 17 0.25 7.9 6.8 0.0 1 20 2041 2060 2041 2063 0.92 12 17 0.00097 0.031 14.4 0.4 2 23 2080 2101 2079 2101 0.96 13 17 0.00015 0.0046 17.0 0.3 1 23 2107 2129 2107 2129 0.98 14 17 1.8e-05 0.00058 19.8 1.5 1 23 2135 2157 2135 2157 0.98 15 17 9.3e-06 0.00029 20.8 1.1 1 23 2163 2185 2163 2185 0.95 16 17 0.0086 0.27 11.4 5.4 1 23 2191 2213 2191 2213 0.98 17 17 0.09 2.9 8.2 1.9 1 23 2219 2241 2219 2241 0.93
Sequence Information
- Coding Sequence
- atgtcCTCAGGGGAGCACTTGCTGATGAGCAAAGAAGCAGGCGAAAGTAAGGACAATGTCAGTGAAGAACATATGGACTATGAAGACACATCATTTTCTGAGGGAACCTCACAGGGTCAAGATGACTCACAAGAAAGTCAAGAGACATCTCTAATGATACCTCAAGGTAACCTGATAATTAATGATGGCCAAGAAGAGAATGAGGACCAGGACATCCCAGAAGACGAACAGATGGGATATGAGGACACTTCCTATGTGGAAGGTGCCCCTGTTCCAGCCTGTGCCGACAATGAAAATTCAGAAGCTGGCCGTGCTACTTGCATTACAGAAATGCCACGAAATGATGGTATTTCTGTAATTGCAAACACAGCAGAAGCAGAGGCTTATTTGTCCGGGGCTGTAATTCGTGAGGCAGGTACCATAGGGTCCACCACTGAACTCTCTTTAAATTCAGAGGATGTTCAGGCCTTAAATGAAGTTTCAGAAAATGAGGAACATCATTCCTTGGTTCCCTACTCCTCAGAAGATAGTGCAGGCATGGATACAGCTGATGATGAAACAAATGCTGAGACTGAGGTTAATCTTGAAGCTGATGTAAATGCTGAGCATGAGTTAGGTGCTGAAGTTAACTTGATTTCGCAAGGTGATGTGAATGTTGAATATGAAACACAAATAAATACTGAAGATGAGGCAAATATTCAGTCTGAAGAAAACATTGAATATGAAAATGAGGCCGAAACTATAGCCGAGGAGAACATTTCATATGAGGCAAGTGCCGAACAAGATGTTAGCACAGAAACTGAAGAGAATTCTCTAAATCAGCACCTAGTGGAACAAGAGATGGAAGCCGAACCAGCAGCCGAAGAATCTGAAACTGATTTTGCTCCTGAAGGAATGGTTGAAAATGCAGAGAGTGTAAGTGAAGCAGAAGCTTTTGAGACTTATGACGAAGAAGGAAATAATGCTTCAAATGTGTATGATGTTCAGGAACCACAGTTAATCAAAAGCACCGAAGGGGAGACAAGCATTATTCTAGAGGGTGTTGCTAAAGAAGGTGACTTGGAATTGTGCAGTGTACCTGACGGTCAAGTTTTAGCTCTTGAAAATGAGGATTCTGGTATGCCAGAAGAACAAGAGTTACCTCAAGAAAATGAGGATTCTACTGTACATGCCATTCAAGAAATAATCCATGAAACTGATTCTATTGAAGGTCAAGGACCCCTAAGTGAAGACACTGCCTTACTAGATAGTCAACATCTATCTCAAGAAAATGATGATTCTGTTCCACACGATGGTCAAGAACTACCCCAAGAAAGTGATGATTCTGCCCTACCAGGAGGTCATGAATTACCCCAGGAAATTGATTCTGTCCTACCAGAAGGTCAAGAATCACCCCAGGAAAACGATGATTCTATCCTCTCAGAAGGTCAAGAATTACCCCAGGAAGATTATGAACCTGTCATGCTAGAAGATCAAGAATCAACTCAGGAAACTGAAGATCCTTGTGATGAAGAATTGCCTCTGGAGAATGAAGATTCCAGTACATTATCAACAGCAGAAGCAGGAGAGGAAGCAGTTGACCAGTCCAATGAGGATGCAGTACAAAATGCAGTAGATGACAATGCGGAACTAGTGGAGGATATGCAGGATGCGGAGGATGATGGTGAAGGGGAGGAATACGTAGGCGAAGAAGAGGAGTTTGAAGACGGTGATGAAATGGCAGAGGAAGTTGAAGTGGAAATAGAAGATTGCTCAGATCCTGAAATGGAATCTGAGGGTGGAGTCACATACATCATCAGTGAAGGCATGATTGTTGTGGAAGAGAATGAAAGTTCAGAAGCTTACCAAACCGCTGATAATGGTGCTGCCAttgaagaagaggaagacTCAGTTGTGCCAAAGACAACTCGAATTGTGATTAAAGTTCCATCTTCTAAAAGTGTAAATGACACCATTTTATGTAGTGAAGAAATGGGAACTGAAGTTGTGAAACAAGAAGGTCAGTCGTTGATATTGCAGGAACTAGGAGATGTATCTAATGCTAGTCATTCTGAACAACCGACTATTAATGAGGTTGAACCAATTAATATGAAAGAAACTGAATCTATGGGAGATTCGAATGAAGTTCTAGCTGAAGAGGATTTGCCTCTTGAACCAACTGGAGAAATTGATGGTACAACCAATGAAGGTGATCTTGGAACACCTGCACCCTCTTCACTCCAAGAGGTAGATCCAGAAAATCCGGCAGGAAAGGAAGACACTCAGCCTGCTGAGTTCGATTGTGGTGTGGATACTGCAGTACAACAAGAGACTGAATTAGTGGCAACTGATGAGTCTATTTCACCAAATATGTTAGAAGAAAGTCAGTGCGAAAAAGCTGTAACAAATGAAGAGGTCGCTGCTCAAAGTAATGAAAGTCTAGACGTAATTGCCACTTCTTCAGTGTCAAGTAAAACTAATGCAAAGAATCAATATGAAAAGATTGATGATATTGAAGAAGCGGCACCCAAGAATTCAAAACCTAAAGGAATCTCAACAAAGTCAGAACAAAAACAAGTTAATTCAGCTCATTTAAAATCTGCTGAGAAGACAATTGGAAAGACTCCAAGTAAACCATTATCTGCCCATGCACCCTCTAAAAGTGAATCCAAAGGTTCTAAACCTTCCAGTAATAATAAGAGTCATTTACCTCATGAAAAGGAGCCTAGCGAATCTGTAAAAAAGAGACAACCGGATAGTGGTGATTCAGTGAAGCGTTCTTCTAAGCACACTCATGGTTCAGCTCATAAACACAAGAGTCAGAATGAAACCAAAACCTCTACCTCTGTAAAGACCATCAGTAACACTGAAACTGCGGCTAAAGAAGAACATTCATCTAAAGGGGACTCTGCAAAGAAGCATGTTGAAGGAAAGGATCGTTCCTTACACAATGAGAGTACCCACAGTTCTAAAAACGTAAAGCAGCCTCTGACTTCATCCCACCGGACACGTTCTAGCTCAAGCACTCCCAAAGAGTCTTCTAGTAGGGACAAACGAAGTGCTCACAAAGAAGAAGGAGCAGCAAAGAAATCAAATAATGCAGTATCTCGTTCAGATGATTCTTTGAGTTCCAGTAAATCGAATTCAGACTCTAAAGTATCTCTTCGTAGTAGTAGATCTCGCAAATCACACTCTGATGCTGCTAATGAAGTGCAAGATCCACCCACTGTCAAAAAGGAGAAAGCCAAAACCTCCACTGAGACACCTCAAAAACCACGCCAGAGTGAACGAGTGTCAAAGGCTACAGAAAAAGCACTTGCTTCAGGCCTGATATCAAGGCGCTCAAGAACAACAGCAGGAGATAGTGCAACAAACAACAGCGAAAGGCCTTCTGACTCATTATCTGAAGATCAGGCTCCATCCCAACGGCGTGGAAAGAGGAAAGCTGattcctctcctccccctgcaCAGGAGGAGACTCCTTCTTCTAAGAGAAGAGTTACCAGAAGTGGGGAAGGTTCACAGTCCAGCGACAGTCCAGCTCAGAGTTTGAGATCGGTCAGAAAGAATAAAACACTAAAGAGGAAAGGGTCTACTGGTGATTCACCTCCTTCAAAACATGCTCACAAAGAAGATCCTAAAGACAAAGCTACAGATGAATTCATTGCTAATATTCCAAATATGTGTCGCATTTGTGGATCAAAGAACGATAATCTGATCAATGTCTTTGGACCAGAGGGACAAACCATGAAGCTGTCAGAAAAAGTTCATAACATTTTGCCAATCAAGATGCGCCAAGAAGAACCTCTTCCTTCTGGGGTATGCCATTCTTGTGTTGTTACACTCATTGCTTGTGAAAAACTTGTTGAGAAATGTACCAGCATTGACAAGAGGCTTCGTTCTCACTATAACTGCCATGAAGAAAAACCAGTTAAAGAAAACATCCAACCTGTCAAAGAGATTCAGCCTGAGACACTCCCAAAGAGTTCTGTTGAATTGTCGAAGGCAGAAAAGTCTGTGAAAAGTGATGTGGCCCCAACATCTAAATCAGCTGAGCTGTCCTCCTCCAAAAAGGATGAGGCGCCTTCCACAACACATTCCTCAAAGGTCAACAATGCCACTAGATCTTCCTCTCGAGTTTCTGCTAAGAAGCAGTTGGAAAGTTCTCAGAAGCCAATTGTTAACCCTCCAGAACCTGAAACAAAGACAACTACTGCACAAGAAGTAAGTAAACCACCTGTGGTTAGCAAAGCAAATGTTGCCTCTAGTCCAGAAACCGAAGATGCCCCTCCTGTCTTAGAGGCTGAGCCACCTCAATCACATTTGCCTCCTACCAACCAAGAACCAGCTGCCCAACCACCAGTTCTTGTTCCACAGCCAGGCAAGCCATTGCCTGAGTTAGTGCCTATTCCTGCTGACGATTCCGGAAGCATGAAACGGTTTGGTAATACTTATCGAGCCCGCATGAAGCCTGGTCAGTgggaaaaaattgaaagagGTCTGGAGGCCATTCATGGTGAATCAcatgatgaagatgaagaaaaTACTGAAACAAAATCATCGCAAGCAGAAGAATTCCACATTGTTGATCTTGATATGAATGTAGAAGAAGTTCAAGAGACCCCAGCCACACCGCAGAAAAATGCCAGTTCCCAACCAGAATTTCATGTGGAGATACCATCAGAGGCAATTGAAGAAGAGACTACTGCACAACAATCTAGTCCAAAGAGTGTCATAGACAGCATCCTTGTTGATTGGAGTGGTGATGAAGATGATGTAGTTCCAGAAAAATCTGCCCAAAATGCCTCTGCAGTTAGTTCAGGACAACGGGCTGTAAGTGCTGGAAAAGATAAGGACAGTGTGAATGGATCTTCTCGACAAAAGCCTATTCAACGCGTTTCAAAAGCGCCATGCCTCTTTGGTGAAGATGAGGAAGGAGATGCTGCATCTACTATCAAGTTAAAACCTGAACCAGCACCATcacctgcccccgcccccacccctgtTCCTGATACAGTGGTCATCAAGCAAGAGTCATTTTGGCCTGAACCAGCACCTGGAACTTCCACAACCTCAACTAGTGAGAAACCCTCTAGTGATGTTCCATGGAAGTGTTTTGTTTGTGGTAAACGAGGAAAGTCTTTGCCGAAATTCCTTGAACATAAAAAGCTGCATTTGAATGACCGCAAACTTGTGAGCTGTCCTAAATGCAGTGAAAGTTTTAGTAATATGGCTCTCTTGAAATCTCACATGAAATCATCCCATGGAGATGATGAGGAAGATGATGTTGTTGCAGAACAACAACAGAGACAGACACGTCGCAGGTCCAACAAACAACAAAGTCATATTGTGGATGTGGACCTCGCGCCTGCCACTGATGGACTGTACCATTGCAGCTTATGCCAGAGTGCATTCACAAACATTGAAAGTCTGTGCCAACACAAGTTAACTCACCAGAAAGGTGTAGAACCTGAAGTACGTTCTGACAAGTACAAGTGCACTTACTGCCGAAAGACTTTCTATGAGCACAAAGAGTTCCAAACCCACTTGGCTTCTCATCAAACTGGACCAAATTTGGGCATGTTCCAATGTGGTAAATGTGATATGAAAATGGTTAATCAAAAGGAGTTCATTGAGCATATTGAGTCTCATAATTCTGAGGATAGTTTTCAATGTGACCATTGCGATAAAGTTTTTGATACAAAGCATAAACTCAGAAGTCATCGCAGCACTGTTCATAAATCAACAGCATATGCCTGTCATTTATGTgacaaagtttgtcaaaagaGGATAACACTTATTGAGCATTTGCGGAAACACACAGGTGATAATCCATTTGCTTGCCCTGTGTGTAATAAAAGATTCAATCGACTCGCAAACTACAAGGCTCATATGACCATTCATGAAAACGCTCGCCGATATGAATGTCCTTACTGTGGGAAACGTTTCAATCGACAAAGTATCCAGCAGCGGCATATTAAAACCCACACTAGTGAGCAATCACGAAAGCATAGATGCAGAGTATGCAACCTTACATTTGGATTGGCTACAGAAATGTTCACTCATCGAAGACTGCATACTCGAGATGAAGTTGAGCGTGCCACATGGGAAGACGAGAAGCTAAGATTGGCCCTGACATCATTTCCATGTAAAGTCTGTCAGCTTCCTTTTAATACAGTTGAGGAAGTCTTAGCGCACATGCCGTCACATACTGATGATGAACGAGACATTGCTGCAAAATTAAAGAATCCACGTcttgaatgtgacatttgtGGTAAAGTTCTTAACAGTAAAAGAACATTCAATGCTCACCGGTCATCTCATATTGATGGGAAACCATATGTTTGTAAGATCTGTTCAAAGGGATACGCCACATCAACAGGTCTCAATTACCACATGCTTTCTCATACCGGAGAAAGACCTTTCCCCTGTACATTCTGCAATAAGGGGTATAAAAATAGCACTGATTTGAAGGTTCACATGCGTCAGCATACTGGTGAATTCCCGTACAAGTGTAATCTATGTAACAAAGCCTTCCGTTCAGCATCCAGTCTTCAGAAGCATGGTTTCGTACATACGGAGAATAGACCTTTCAAGTGTCAATACTGCAACATGTCATTCAAGCGAGAAAGCACGAAGCACAACCATGAGCGCATTCACACCAATGATCGCCGCTTTAAATGCAAAGTGTGTTCACGTACTTTCATTCAAAAAGGAGCTTGTGATGCCCATGAAAGGTTGCACTTCCGCGGTGGCACGCAGGTATTCATGACTGTGGAAGAAGGAGCAGCTGCACAGAGGCTAGACTCCAGAAATGTGGAAGGGGCATCTGGTTCAAAAACAGACAAACATGATCTCTTTGATGATTTTGAAGAAGAAGATTTTGATGAAGAcgatgaagatgatgaagatgagTACATCATTTATGAAGATGATAGTGTTGAAGATGGGGATAATGATGACAGGGATGAGGAAGAAATGGCTGAATCAGAGAAGAACGTTCTCGTTGATCCTTTGAGAAACGATGAAGGCATTTCAAAGAGTCCTTACGATGAGTCTAAATCTAGCAATGGTGTAGATCTCCCTGTGACGAGCATTACTCCAGTACCAGTCACTTTATCAGGCGACTCTATTCCGAACATTGGTGACAATTCTGTTCATATTACTATACTTTAA
- Protein Sequence
- MSSGEHLLMSKEAGESKDNVSEEHMDYEDTSFSEGTSQGQDDSQESQETSLMIPQGNLIINDGQEENEDQDIPEDEQMGYEDTSYVEGAPVPACADNENSEAGRATCITEMPRNDGISVIANTAEAEAYLSGAVIREAGTIGSTTELSLNSEDVQALNEVSENEEHHSLVPYSSEDSAGMDTADDETNAETEVNLEADVNAEHELGAEVNLISQGDVNVEYETQINTEDEANIQSEENIEYENEAETIAEENISYEASAEQDVSTETEENSLNQHLVEQEMEAEPAAEESETDFAPEGMVENAESVSEAEAFETYDEEGNNASNVYDVQEPQLIKSTEGETSIILEGVAKEGDLELCSVPDGQVLALENEDSGMPEEQELPQENEDSTVHAIQEIIHETDSIEGQGPLSEDTALLDSQHLSQENDDSVPHDGQELPQESDDSALPGGHELPQEIDSVLPEGQESPQENDDSILSEGQELPQEDYEPVMLEDQESTQETEDPCDEELPLENEDSSTLSTAEAGEEAVDQSNEDAVQNAVDDNAELVEDMQDAEDDGEGEEYVGEEEEFEDGDEMAEEVEVEIEDCSDPEMESEGGVTYIISEGMIVVEENESSEAYQTADNGAAIEEEEDSVVPKTTRIVIKVPSSKSVNDTILCSEEMGTEVVKQEGQSLILQELGDVSNASHSEQPTINEVEPINMKETESMGDSNEVLAEEDLPLEPTGEIDGTTNEGDLGTPAPSSLQEVDPENPAGKEDTQPAEFDCGVDTAVQQETELVATDESISPNMLEESQCEKAVTNEEVAAQSNESLDVIATSSVSSKTNAKNQYEKIDDIEEAAPKNSKPKGISTKSEQKQVNSAHLKSAEKTIGKTPSKPLSAHAPSKSESKGSKPSSNNKSHLPHEKEPSESVKKRQPDSGDSVKRSSKHTHGSAHKHKSQNETKTSTSVKTISNTETAAKEEHSSKGDSAKKHVEGKDRSLHNESTHSSKNVKQPLTSSHRTRSSSSTPKESSSRDKRSAHKEEGAAKKSNNAVSRSDDSLSSSKSNSDSKVSLRSSRSRKSHSDAANEVQDPPTVKKEKAKTSTETPQKPRQSERVSKATEKALASGLISRRSRTTAGDSATNNSERPSDSLSEDQAPSQRRGKRKADSSPPPAQEETPSSKRRVTRSGEGSQSSDSPAQSLRSVRKNKTLKRKGSTGDSPPSKHAHKEDPKDKATDEFIANIPNMCRICGSKNDNLINVFGPEGQTMKLSEKVHNILPIKMRQEEPLPSGVCHSCVVTLIACEKLVEKCTSIDKRLRSHYNCHEEKPVKENIQPVKEIQPETLPKSSVELSKAEKSVKSDVAPTSKSAELSSSKKDEAPSTTHSSKVNNATRSSSRVSAKKQLESSQKPIVNPPEPETKTTTAQEVSKPPVVSKANVASSPETEDAPPVLEAEPPQSHLPPTNQEPAAQPPVLVPQPGKPLPELVPIPADDSGSMKRFGNTYRARMKPGQWEKIERGLEAIHGESHDEDEENTETKSSQAEEFHIVDLDMNVEEVQETPATPQKNASSQPEFHVEIPSEAIEEETTAQQSSPKSVIDSILVDWSGDEDDVVPEKSAQNASAVSSGQRAVSAGKDKDSVNGSSRQKPIQRVSKAPCLFGEDEEGDAASTIKLKPEPAPSPAPAPTPVPDTVVIKQESFWPEPAPGTSTTSTSEKPSSDVPWKCFVCGKRGKSLPKFLEHKKLHLNDRKLVSCPKCSESFSNMALLKSHMKSSHGDDEEDDVVAEQQQRQTRRRSNKQQSHIVDVDLAPATDGLYHCSLCQSAFTNIESLCQHKLTHQKGVEPEVRSDKYKCTYCRKTFYEHKEFQTHLASHQTGPNLGMFQCGKCDMKMVNQKEFIEHIESHNSEDSFQCDHCDKVFDTKHKLRSHRSTVHKSTAYACHLCDKVCQKRITLIEHLRKHTGDNPFACPVCNKRFNRLANYKAHMTIHENARRYECPYCGKRFNRQSIQQRHIKTHTSEQSRKHRCRVCNLTFGLATEMFTHRRLHTRDEVERATWEDEKLRLALTSFPCKVCQLPFNTVEEVLAHMPSHTDDERDIAAKLKNPRLECDICGKVLNSKRTFNAHRSSHIDGKPYVCKICSKGYATSTGLNYHMLSHTGERPFPCTFCNKGYKNSTDLKVHMRQHTGEFPYKCNLCNKAFRSASSLQKHGFVHTENRPFKCQYCNMSFKRESTKHNHERIHTNDRRFKCKVCSRTFIQKGACDAHERLHFRGGTQVFMTVEEGAAAQRLDSRNVEGASGSKTDKHDLFDDFEEEDFDEDDEDDEDEYIIYEDDSVEDGDNDDRDEEEMAESEKNVLVDPLRNDEGISKSPYDESKSSNGVDLPVTSITPVPVTLSGDSIPNIGDNSVHITIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -