Basic Information

Insect: Thrips palmi
Gene Symbol: znf423_1
Assembly: GCA_012932325.1
Location: NW:12215254-12245109[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 8e-06 0.00025 21.0 1.0 1 23 85 107 85 107 0.98

2 24 0.47 15 6.0 5.9 1 23 113 135 113 135 0.98

3 24 1.8e-06 5.6e-05 23.0 2.3 1 23 141 163 141 163 0.99

4 24 4e-05 0.0013 18.8 0.2 1 23 169 191 169 191 0.98

5 24 0.0019 0.061 13.5 2.9 1 23 223 246 223 247 0.96

6 24 0.016 0.5 10.6 0.3 2 23 357 379 356 379 0.95

7 24 1.6 51 4.3 0.1 3 23 395 416 394 416 0.90

8 24 0.28 9 6.7 0.0 3 23 475 495 474 495 0.97

9 24 1.5 46 4.4 0.0 2 11 568 577 567 580 0.86

10 24 0.0018 0.057 13.6 0.1 3 23 610 631 608 631 0.94

11 24 1.5 47 4.4 0.1 1 23 636 659 636 659 0.92

12 24 4.6 1.5e+02 2.8 0.6 1 19 762 780 762 784 0.84

13 24 0.0088 0.28 11.4 0.5 1 23 788 813 788 813 0.96

14 24 5.6 1.8e+02 2.6 0.1 3 23 853 875 852 876 0.84

15 24 0.00017 0.0054 16.8 1.7 3 23 896 916 895 916 0.98

16 24 0.12 4 7.8 0.5 1 23 930 952 930 952 0.97

17 24 0.049 1.6 9.1 0.1 3 23 961 981 960 981 0.97

18 24 0.031 1 9.7 0.0 2 23 1129 1151 1129 1151 0.96

19 24 0.4 13 6.2 0.3 1 23 1155 1177 1155 1177 0.95

20 24 0.69 22 5.4 0.3 2 23 1187 1208 1187 1208 0.95

21 24 0.0029 0.093 12.9 0.0 1 23 1216 1238 1216 1238 0.97

22 24 0.039 1.3 9.4 3.0 1 23 1245 1267 1245 1268 0.94

23 24 0.0065 0.21 11.8 0.0 2 23 1332 1354 1332 1354 0.97

24 24 0.53 17 5.8 0.0 2 23 1370 1392 1369 1392 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	8e-06	0.00025	21.0	1.0	1	23	85	107	85	107	0.98
2	24	0.47	15	6.0	5.9	1	23	113	135	113	135	0.98
3	24	1.8e-06	5.6e-05	23.0	2.3	1	23	141	163	141	163	0.99
4	24	4e-05	0.0013	18.8	0.2	1	23	169	191	169	191	0.98
5	24	0.0019	0.061	13.5	2.9	1	23	223	246	223	247	0.96
6	24	0.016	0.5	10.6	0.3	2	23	357	379	356	379	0.95
7	24	1.6	51	4.3	0.1	3	23	395	416	394	416	0.90
8	24	0.28	9	6.7	0.0	3	23	475	495	474	495	0.97
9	24	1.5	46	4.4	0.0	2	11	568	577	567	580	0.86
10	24	0.0018	0.057	13.6	0.1	3	23	610	631	608	631	0.94
11	24	1.5	47	4.4	0.1	1	23	636	659	636	659	0.92
12	24	4.6	1.5e+02	2.8	0.6	1	19	762	780	762	784	0.84
13	24	0.0088	0.28	11.4	0.5	1	23	788	813	788	813	0.96
14	24	5.6	1.8e+02	2.6	0.1	3	23	853	875	852	876	0.84
15	24	0.00017	0.0054	16.8	1.7	3	23	896	916	895	916	0.98
16	24	0.12	4	7.8	0.5	1	23	930	952	930	952	0.97
17	24	0.049	1.6	9.1	0.1	3	23	961	981	960	981	0.97
18	24	0.031	1	9.7	0.0	2	23	1129	1151	1129	1151	0.96
19	24	0.4	13	6.2	0.3	1	23	1155	1177	1155	1177	0.95
20	24	0.69	22	5.4	0.3	2	23	1187	1208	1187	1208	0.95
21	24	0.0029	0.093	12.9	0.0	1	23	1216	1238	1216	1238	0.97
22	24	0.039	1.3	9.4	3.0	1	23	1245	1267	1245	1268	0.94
23	24	0.0065	0.21	11.8	0.0	2	23	1332	1354	1332	1354	0.97
24	24	0.53	17	5.8	0.0	2	23	1370	1392	1369	1392	0.94

Sequence Information

Coding Sequence: ATGCTGTTCAAGGGCAACAGCAGCCGGCTGGAGCTGCTCATCGAGAAGATCCAGGCCAACAAGGAGAACCACCACGTCAGCGAGCAGGACATCAAAGATGCCCTCGGCACGGACCCCGGCTCCTCGTGGCGCTCCGAGACGCCCGAGGacgccacgtcgccgtcgcccagcAGCTGCGCGACCCCCAACTCGGCGACGGACGTGGCCGACTCGGAGCTCGCCTTCACCGTCGGCGTCACCGAGGGCACGCCCTACGCCTGCTCCTTCTGCGACAAGGCCTTCCCGCGCCTGTCCTACCTCAAGAAGCACGAGCAGACGCACAGCGACCAGATGCCGTTTCGGTGCGAGTTCTGCAGCAGGCTGTTCAAGCACAAGCGCAGCCGCGACCGCCACATCAAGCTGCACACCGGCGACAAGAAGTACCGCTGCACCCAGTGCGAGGCCGCCTTTAGCCGCAGTGACCACCTCAAGATCCACATGAAGACGCACGACAACCAGAAGCCGTTCCAGTGCACGGTGTGCAACCGCGGCTAcaacacggcggccgcgctcacCTCGCACATGCAGAACCACAAGAAGGCGGCCGACTCGGCGTCCAACGGCGGCGCCTCCAACGGCCGCTCGTCGTCCCGGGCGTCGTCCGACAACACGCCGTCGCCGGGCACCTTCCGCTGCCTGCAGTGTGGGGACTGCTTCCGCAAGCCGGAGGACCTGCAGTCGCACATGGCGAGCCAGCACCACGTGGACatggggtcgccgccgtcgcgcagtGCCAGCagagggctgctgctggactcGCCGCTGTCGCGGTCGCCCTTCCCGCCGCACAGCCTGGCCTGCATCTACTGCACCAAGGACTCGTTCCCCAACAtggaggccctgcagctgcacgtgcaggccatgcacggcgcgctgctcaaCGGCGAGCTCCGCGacctggcggcgcaggcggcgcaagccgcgcgggggcggcccccggTGGAGGACCCCCCTCGCGGCTCGCCGACCACGCCCaacccgcccacgcccaccacgcccaacgcgggcggcagcggcggcgggctcaTCCCTTGCGAGCTGTGCACCATGAGGTTCAACTCGATTGGCGGGCTGCACAAGCACCAGCGCGCCGTCCACGGGCTGAGCGGACCCAAGTTCCTGGGCGACCCTTCCCCCATCCTGTGCGTGCACTGCTCGCTGCCCTTCCCGTCgtccgccgccttcgccgagcACTACGTCCTGGTGCACGGCGGTGCCCTCAcgcggtcgccgtcgccGAAGACGTCCGGCAGGCGTGGCGATCGGGGCGACGACAAGGCCATGGGCATGCCGCCGTCCAAGCGGTCCAAGGCCAACCACGacctgccgccactgcccctcGACGGCCTTATGggccgcgagTACGAGGCAGGCCCTCTGCTGTGCAaccagtgcggcgcggcggtgcccgACTTCGAGTCGTTCCGCGTGCACCTCAAGGCCCACCTGGAGGAGTctggcgccgggctgcgctcgctgctggGGGCGgacctgctcggcctgctgccccccgggcccggcacgccgctcgGCACGCCACTCGGCTccctggggccgctggggccgttGGGTAATctgccgctggggccgccccccgccgcggacgaACCTCCCTCCCGCAGccaccgccgcagcccgtCCAGTGGGTCCCCGTCCGGGCTGAGCTGCCCGCACTGCGGCATGCAGttcacggccagcgccgccagctcggAGGAGCGGCTCAGCGTGGGCGGCCAGCTGGAGCGACACGTCGCCGAGCACTtcctggccacggccaccgagtTCGGCTGCCCGACATGCAGCAAGCTCTTTGCCAAGCCGGACGAGCTGCAGAAGCACCTCATGGACATCCACGCGCACCACCTGTACCGCTGCGCCCTCTGCCAGGAGCTGTTTGACTCCAAGGTGGCCATCCAGGTGCACTTCGCCGTCAAGCActcgtcggcctgcccgctgtaccggtgcacggcgtgcccggcctcctcggcgccgtcggtGTTCCGCTCGGACAGGGAGTTCGGGCACCACgtccgcacggcgcacgcctcgcaccccctgttggcggcgacgcacgcgctgctgctgcaaTACCAGCAGAAGCTACAGCAACGTGACCAGCAGCGGGAGCAGCGGGACCGCGATCGAGagcaccgcgaccgcgagcgTGAGCGcgaccgcgagcaccgcgaccgcgagcgagagagggagcgcgAGGCTAGTGCGGAGCAGCAGCAAGGCGGGCCGTACCGCTGCCTGTTCTGCCGCGCGTCCTTCTCCTCCGAGCTGGAGCTGCAGTTCCACCTGCCCACGCACACGCGCCAGTTCCACTGCCCCATGCCGCTCTGCGGGGAGACCTTCCAGGTCGAGTTCCTGCTGGACAAGCACATGCAGACGCAGCACTCCGGCAGCGTCCAGGCGATGCTCAACGGCGTGGCCCGGGAAGgggaccgcgacgcgACcaacggcgacgcgacgctggcGGACCCTCTGCTCAACAACAACCAGGCCGGCGCGTCGTGCGACATCTGCGATCGCGGCGACTTcgccagcgaggcggagctggccgcgcaccgcaaGCTAGCCCACCACAAGGCCAGCCCCGGAGGCAACGGCGCCTCCGCCAAGAACGGCGCCGTCAGCCTGCTGTGCGCGTACTGCAACGAGAGCTGCAAGTCGCGCGCCGAGCTCGAGAACCACATGAAGACGCACTCGCACCAGgggacggccggcctgggcggcacGGGCAAGCACAAGTGCAACATCTGCGACGAGCTGTGCCCTTcagccgccgtcctcgccgagcACAAGCTGACCCACTGCAAGGTGGTGCAGGGCTCGGCGTGCAcggtgtgccgcgccgccgtcaccaccgAGGAGCAGTTCCGTGCGCACCTGCGTCAGCacgcgcagcccagcggccagggtggccagggcggcaaccccaccgccgccaacgcgcccCTCTGCCTACCCGTGCAGTGCGTCATCTGCCGCCAGACCCTGGTCTCCGACGTGGAGGTGCGGCTGCACGCGCGCTTccacctgcagggcggccaggccgaacAGCCCTCCAGCTCGCCCGACGCCAACACCGCCACCTGCTGCATCTGCCTGCAAAGCGCCGAGGCGACCACCATGGTGCCCACCAGCTCCACGCCTATCCCGGGGCAGCCCATGTCGTACGTGTGCACGGACTGCTACCGCCGCCACTCGAAGCTGTCCTCGCGGTCCCCTAGCGCGGGCCAGGTGTCGCCCAGCCAACCCCAGGATGACACCAAGGAGTCCCGGAAGGAGTCCCGGACCCCCGCGTCCGAGAGGaccggccaggacgcggccacgccgccgcgctgcgcagagTGCGGCGTCAAGACGGAGTCAGCCGCCGCCCTGGAAGCGCACATGGCCTCCGTGCACAAGAACACGTACCAGTGCATCAAGTGTCAGGCGAGCTTCGAGACGGAGCGCGACATCCGGCGGCACGTGTCGGCGCACTTGCTGGCGGAGGGCTCCGCGGCCAACGagtgccgcctctgccgccgccagctgtccacgccactgcagctgcagctgcacctCATCGAGCACACGTTCGCCGGCTGCGCGTCCTTCACCTGCTACATCTGCAGCGCCGTGTTCACCGCCGCTCGCGGCCTCCAGGCGCACAtgctggagcacggcctggcggcgcggccctacgACTGCTCGCACTGCGGCCTGCGCTTCTTCTTCCGCGCGGAGCTGGACAACCACACGCTCGGCCACCACGCGCACGCCCTGGcgcagccgcgCGCGCTAGGCTCCAACGGGCTGGACCTGCACTACTACAccgtgcccggcggcgcgctggccgctgaCGCGTCCAAGTCTCCGCGGAAGTCCCCGGGCCGCAGCAACGGCCGGGACCGCGAGGCCagcggcggtcgcggcagcacgtcggcggcgtccccgaggccgcggtgcCTCATCTGTGGCAAGGACctgccgtcggcgcgcgcgctcgccgcccacCTGCGATCTAGTCACGGCATGCAGGAcaacggcggcgtggcgctggacgGCGACATGCAGGTGTGCCTGCTCTGCAAGGAGGTGCTGCCggaccgcgacgcgctgctcgtgCACCTGGCCGTGCAGCACCCCGCGCCCATGCCCCTCGACATGGCGCTGCTCAGCCAGGCgcacgcgctgcagcagcaacagcagggCGTCAAGCAGGagccgtcgtccgtcCAAAAGATGCACTCAATAATGTTAAACCACATTGATTGTACAGAAATATTTCTGAATAGTGAAAAGGTGGGTTGTCATTGTGATAGAAGTTTTATATTTTATATTCCAGTAGTATACCCTACTTATGATCACATCAAATGTTATATGCATGCATAG
Protein Sequence: MLFKGNSSRLELLIEKIQANKENHHVSEQDIKDALGTDPGSSWRSETPEDATSPSPSSCATPNSATDVADSELAFTVGVTEGTPYACSFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTQCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKAADSASNGGASNGRSSSRASSDNTPSPGTFRCLQCGDCFRKPEDLQSHMASQHHVDMGSPPSRSASRGLLLDSPLSRSPFPPHSLACIYCTKDSFPNMEALQLHVQAMHGALLNGELRDLAAQAAQAARGRPPVEDPPRGSPTTPNPPTPTTPNAGGSGGGLIPCELCTMRFNSIGGLHKHQRAVHGLSGPKFLGDPSPILCVHCSLPFPSSAAFAEHYVLVHGGALTRSPSPKTSGRRGDRGDDKAMGMPPSKRSKANHDLPPLPLDGLMGREYEAGPLLCNQCGAAVPDFESFRVHLKAHLEESGAGLRSLLGADLLGLLPPGPGTPLGTPLGSLGPLGPLGNLPLGPPPAADEPPSRSHRRSPSSGSPSGLSCPHCGMQFTASAASSEERLSVGGQLERHVAEHFLATATEFGCPTCSKLFAKPDELQKHLMDIHAHHLYRCALCQELFDSKVAIQVHFAVKHSSACPLYRCTACPASSAPSVFRSDREFGHHVRTAHASHPLLAATHALLLQYQQKLQQRDQQREQRDRDREHRDRERERDREHRDREREREREASAEQQQGGPYRCLFCRASFSSELELQFHLPTHTRQFHCPMPLCGETFQVEFLLDKHMQTQHSGSVQAMLNGVAREGDRDATNGDATLADPLLNNNQAGASCDICDRGDFASEAELAAHRKLAHHKASPGGNGASAKNGAVSLLCAYCNESCKSRAELENHMKTHSHQGTAGLGGTGKHKCNICDELCPSAAVLAEHKLTHCKVVQGSACTVCRAAVTTEEQFRAHLRQHAQPSGQGGQGGNPTAANAPLCLPVQCVICRQTLVSDVEVRLHARFHLQGGQAEQPSSSPDANTATCCICLQSAEATTMVPTSSTPIPGQPMSYVCTDCYRRHSKLSSRSPSAGQVSPSQPQDDTKESRKESRTPASERTGQDAATPPRCAECGVKTESAAALEAHMASVHKNTYQCIKCQASFETERDIRRHVSAHLLAEGSAANECRLCRRQLSTPLQLQLHLIEHTFAGCASFTCYICSAVFTAARGLQAHMLEHGLAARPYDCSHCGLRFFFRAELDNHTLGHHAHALAQPRALGSNGLDLHYYTVPGGALAADASKSPRKSPGRSNGRDREASGGRGSTSAASPRPRCLICGKDLPSARALAAHLRSSHGMQDNGGVALDGDMQVCLLCKEVLPDRDALLVHLAVQHPAPMPLDMALLSQAHALQQQQQGVKQEPSSVQKMHSIMLNHIDCTEIFLNSEKVGCHCDRSFIFYIPVVYPTYDHIKCYMHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -