Tpal004236.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:4058645-4064120[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7 2.2e+02 2.3 0.6 1 20 372 391 372 393 0.86 2 16 0.25 7.9 6.8 0.0 2 23 423 446 422 446 0.90 3 16 0.2 6.4 7.1 0.3 1 23 480 502 480 502 0.97 4 16 0.00028 0.0088 16.1 0.3 3 23 510 531 508 531 0.95 5 16 0.00052 0.017 15.3 0.5 1 20 536 555 536 559 0.91 6 16 0.47 15 6.0 3.2 4 23 565 587 563 587 0.86 7 16 0.042 1.3 9.3 0.0 2 23 626 650 625 650 0.90 8 16 4e-05 0.0013 18.8 0.1 3 23 657 677 655 677 0.97 9 16 6.6e-05 0.0021 18.1 0.1 1 23 683 706 683 706 0.96 10 16 1.1e-05 0.00035 20.5 0.5 1 23 712 735 712 735 0.97 11 16 0.14 4.5 7.6 2.7 3 23 744 765 742 765 0.94 12 16 0.0015 0.048 13.8 1.2 1 23 771 794 771 794 0.96 13 16 4.3e-05 0.0014 18.7 2.5 1 23 800 822 800 823 0.95 14 16 7.7e-05 0.0025 17.9 0.6 1 23 827 849 827 849 0.97 15 16 0.0014 0.045 13.9 2.0 1 22 855 876 855 876 0.95 16 16 3e-06 9.7e-05 22.3 2.4 1 23 883 906 883 906 0.98
Sequence Information
- Coding Sequence
- ATGATTTTAGTATCTTACATTGATATTTTAGATTTTGTTGGTGGCGATAGGCTTTGCCTCATCGAAGGAGAAGAAATCTTCAATGATAATAAAGTTGCGAACGTCGAAGTGCTGTGCAGATCTGCTGGAGAATGCTATGATGTTTCAGCAACCTGCCAAGACACTTCACATTCCAAAAATGTTACTGTTTGTATTAAAATTgacgaaaacaagaagaaaagtTTTCTATCGAATTGTACCTGTGTCCGTAGTGGATTAGGAAAATGCGGACATGTTGCTGCTATTCTCATTTATCTGCACAGAAACCCCCTTAGCTGCTCAAATGACAGTGATGCAGCCCAATTGCCTCCAAAGTCTCAATTTGAGTTGAAAAATtctgaaagaaaaattgaCAATAATTCATTGAAGGAAGATCATATTGGGAAAAGGCCAGAGGAGCAATATTGCAGAAAATTGAGGAATAAGCGTCCTATAGCTGCTGTTGGAACAACAAGTCGTGGTGAGACCAAATCTAAATCTGTGATTAACAAGACAACTAACCTTGACAATGTCAAGGCTATCGAAGATGTTGATGACCCTACCTGGGTCAAGGAAAGTGACGGAGAGGATGATGAGGCCATTGATTTTTCACCTTCATCTGATGACGATTGGAAGCCTTCGCCTGAGAAAAAACGTCAAAAAAGGAAGATTTCTTTATGTTCCTCAAAGgaTCCTAAAGGTGTCTCAAAAGCTCGGGAAAAGAAACATCACATGACTATACTAAAAGAAGACCAGGAAGCAAGAGAACTCTCATCTTCTGCATTTCAAGGATGCGAAGGAGAGGAGCAGAAAGAAGATGAAGACAAAGCGGATGATACTTCAACAAGAACAGAATCCCAGAAGAAAAGCCTGGCAGTTTCAGCACCATtcgaagaggaagaggaggaagacaGCAATCTGACAATGGAACCATTGCAGTGTCTTCTGTGTGAAGTGGCTACTGGCACTAGACAGGAAATGCATGGCCACTACATACTGGCACATCGCACCAAAAACAGAGACACAGTAGTTGTGTGTGATCGATGTGGGGATTTCCGACTGCCAAGGGACCACATCTGCCCGTCGCAGCAGTCGTTCCGGTGCCGCATGTGCCGAGTCTCGTTCCAGTCGGGCCGCTTCTACTGGAACCACCTGATCCGCGTCTCCAAGACGCACACTGCGCGCCTGGAGaggggcgagcagggcgcacagggcgcgcagggcgcgcagggcggactgcctcgctggcgctgcggctggTCGCGGTGTGCCGAGCGCTTCCCGACCGAGGAGGAGCTCATGATCCACGTCCGCCTGCACCTGCCCCAGCCCGTGGCCCACATGTGCACCGTCTGCAACCTGCTGCTGCCAAACGCGGACGCCAAGGTGCTCCACCTGGCCAAGCACGACTCGAGCGTGTACgagtgcgcggcctgcgcgcacgCGTGTGCCGACAAGGAGGCCTTGCGCCAGCACTGGCAAGTGCACGCCAACGAGCGGCCGCACCTCTGCGACCAGTGCGGGTGGCGCTTCGTCAGCGAAGACCTGCTGCAGGTCCACGCGCGCAAGGTGCACGAGGGCGGCCCCTTCTCGTGCAACAAGTGCCCCACGACCTTCAACGACCGCACGGACTTGCGCGTGCacttcggcgcggcgcacggcaagGTGCGCTGCTGGCAGTCGTCCTGCACGTTCCGGTGCACCAGGAAGgcgtcgctgcagcgccacgagAGGCAGGTGCACCGGGCGCACGCCAATGCagccgaggacgacgtcgacgtcgactTCAACGTGgacgacccgccgccgcccccggagaCGGTGTTGGCGGATGCCAGCGGCGACGACAGCTCGCTGACGTGCCCCGTTCcggcgtgcggggcgagcTTCGCCAAGCGCGGCAAGCTGCGCGaccacgtccgcgacgtccacgacggcgcccCTGTCATCTGCCCCGAGTGCAACAAGGCCttccggacgcggcgcgcgctcgacGAGCACGTGCGCGTGCACACGGGGGAGCGGCCCTTCGTCTGCGCCGAGTGCGGCATGTCCTTCAAACGCGTCCAGAACCTGGAGTACCACATCAAGGGCGCGCACAAGAACGAGCGCAACTTCTCGTGCCCCGAGTGCGACAAGCGGTACATCTCCAACGCCGACATGCAGCGACACCTGCGCTACAGCCACCAGGACAGCAGGAAGTGGCACCTGTGCACGGAATGCGGCCACAAGGCGCCCAGCCTGTTCAACCTCAAGCAGCACGTCCAGAGCAAGCACACGGGGGAGCGGCCGCACAAGTGCTACATCTGCCAGGCGGGCTTCGTCGCCAAATCGGACCTCACGAAGCACATCATGTACAAGCACGACAAGCAGCAGCCGTTCCCGTGCCCGGACTGCGATCGGCGGTaccagcggcgccgcgacctgcagctacaccagcagcgccaccacgccactggtCACACCTGCCCCGAGTGCGGCAAGGCCTTCGACTCGTACGCGTCCATGATGCAGCACGCGCGCTACCACACCAACGAGGAGGCGTTCcagtgcgccgcgtgcggccgcCGCTTCCCGCACCGCATGAACCTGAGCCGCCACCTGTGCACGCCCGACATCAAGAAGAACTTCCGCTGTAAGACGTGCGGGCTGACCTTCACCACCAGCGGCAGCCTCAAGTCGCACCGCCGGCGGCTGCACCCCACCGAGTACGCCGCTGACCTCGCCGAGCCCacagccaagcaggccaaaCAGGATCAACAGAACCAGGATCAAGAACACCAGGATCAAGAGCACCAGGATCAAGAACATCAGGATCGagaacagcaacagcagcaggagTCGCAGACGGTGGAGCAGCCCTCAGAAGaccagcagccgccgccgccaccctcagAAGAGCCACCCCCGGAGCAGCCACAGCCGGTGGCGCAGACGCCGCAGACCTCATCACCCCAgtacctgccgccgccggctgcccaGTCCCCCGTCATACATCACGCCTCGCTCAACCAACAGCCGCATCAGCAGccaccgcagcagccgcagacACCGCAGCCCGTGACGCAGTTGGCGGCGCACGAAGCGGCGCAGCAAAGCCGGCAACACGTGGTCGTACATCAACCGCGACATCACCAGGAGGAGCAACAGCACGCGgaccagcagccccagcagcacgccgcgctgggggAGGCGCACGGCGCGTGGGTGATGcagcccgccggggccgcgacggccacgacggccgcgctgACGCAGGACGACGCTATCCTCACGCTGACGACCTGCCCGACGTACCACGACCcggagagcgcgccgccgcccctcgtgctgcagccgctgcagcagagCAACGTGCTGCGGTACTCGGCGCTGCCGACGGACGTGCCGCTGGTCGtgaaggcgccgccgccgctcgtgTCGCTGCAGGTCAAGGCCGACCAGCAGCAGGTGATGTACGCGCAGCCCGCGGTGCCCACCGGGACTCTCGtgtccgccgcccccaccgtcAAGCTGGTCTCGGTGAGCCagagccagccgccgccactggcgTCGCTGTCCTCGTCGGGGCAGATCCTGGGCGCGCCCATCCAGAGCACGGCGGACGGCTCCATCCACCTCGTGTTCGTCCCGGCCCCGaccgtgccggccgtccccgccgtccccgcgcacACCAAGTAG
- Protein Sequence
- MILVSYIDILDFVGGDRLCLIEGEEIFNDNKVANVEVLCRSAGECYDVSATCQDTSHSKNVTVCIKIDENKKKSFLSNCTCVRSGLGKCGHVAAILIYLHRNPLSCSNDSDAAQLPPKSQFELKNSERKIDNNSLKEDHIGKRPEEQYCRKLRNKRPIAAVGTTSRGETKSKSVINKTTNLDNVKAIEDVDDPTWVKESDGEDDEAIDFSPSSDDDWKPSPEKKRQKRKISLCSSKDPKGVSKAREKKHHMTILKEDQEARELSSSAFQGCEGEEQKEDEDKADDTSTRTESQKKSLAVSAPFEEEEEEDSNLTMEPLQCLLCEVATGTRQEMHGHYILAHRTKNRDTVVVCDRCGDFRLPRDHICPSQQSFRCRMCRVSFQSGRFYWNHLIRVSKTHTARLERGEQGAQGAQGAQGGLPRWRCGWSRCAERFPTEEELMIHVRLHLPQPVAHMCTVCNLLLPNADAKVLHLAKHDSSVYECAACAHACADKEALRQHWQVHANERPHLCDQCGWRFVSEDLLQVHARKVHEGGPFSCNKCPTTFNDRTDLRVHFGAAHGKVRCWQSSCTFRCTRKASLQRHERQVHRAHANAAEDDVDVDFNVDDPPPPPETVLADASGDDSSLTCPVPACGASFAKRGKLRDHVRDVHDGAPVICPECNKAFRTRRALDEHVRVHTGERPFVCAECGMSFKRVQNLEYHIKGAHKNERNFSCPECDKRYISNADMQRHLRYSHQDSRKWHLCTECGHKAPSLFNLKQHVQSKHTGERPHKCYICQAGFVAKSDLTKHIMYKHDKQQPFPCPDCDRRYQRRRDLQLHQQRHHATGHTCPECGKAFDSYASMMQHARYHTNEEAFQCAACGRRFPHRMNLSRHLCTPDIKKNFRCKTCGLTFTTSGSLKSHRRRLHPTEYAADLAEPTAKQAKQDQQNQDQEHQDQEHQDQEHQDREQQQQQESQTVEQPSEDQQPPPPPSEEPPPEQPQPVAQTPQTSSPQYLPPPAAQSPVIHHASLNQQPHQQPPQQPQTPQPVTQLAAHEAAQQSRQHVVVHQPRHHQEEQQHADQQPQQHAALGEAHGAWVMQPAGAATATTAALTQDDAILTLTTCPTYHDPESAPPPLVLQPLQQSNVLRYSALPTDVPLVVKAPPPLVSLQVKADQQQVMYAQPAVPTGTLVSAAPTVKLVSVSQSQPPPLASLSSSGQILGAPIQSTADGSIHLVFVPAPTVPAVPAVPAHTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -