Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:22012263-22017993[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.3e-05 0.001 19.0 0.4 1 23 358 380 358 380 0.96

2 10 9.4e-05 0.003 17.6 0.5 1 23 386 408 386 408 0.96

3 10 3e-07 9.6e-06 25.5 0.6 1 23 412 434 412 434 0.99

4 10 9.9e-06 0.00032 20.7 1.8 1 23 440 462 440 462 0.94

5 10 2.8e-06 9e-05 22.4 2.0 1 23 468 490 468 490 0.99

6 10 1.3e-05 0.0004 20.3 2.1 1 23 496 518 496 518 0.98

7 10 1.9e-06 5.9e-05 23.0 0.5 2 23 524 545 523 545 0.98

8 10 3.9e-05 0.0012 18.8 1.0 1 23 551 573 551 573 0.97

9 10 0.00028 0.0087 16.1 3.2 1 23 579 601 579 601 0.98

10 10 3.3e-05 0.0011 19.0 1.8 1 23 607 629 607 629 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.3e-05	0.001	19.0	0.4	1	23	358	380	358	380	0.96
2	10	9.4e-05	0.003	17.6	0.5	1	23	386	408	386	408	0.96
3	10	3e-07	9.6e-06	25.5	0.6	1	23	412	434	412	434	0.99
4	10	9.9e-06	0.00032	20.7	1.8	1	23	440	462	440	462	0.94
5	10	2.8e-06	9e-05	22.4	2.0	1	23	468	490	468	490	0.99
6	10	1.3e-05	0.0004	20.3	2.1	1	23	496	518	496	518	0.98
7	10	1.9e-06	5.9e-05	23.0	0.5	2	23	524	545	523	545	0.98
8	10	3.9e-05	0.0012	18.8	1.0	1	23	551	573	551	573	0.97
9	10	0.00028	0.0087	16.1	3.2	1	23	579	601	579	601	0.98
10	10	3.3e-05	0.0011	19.0	1.8	1	23	607	629	607	629	0.99

Sequence Information

Coding Sequence: ATGGAGCAGCCACCTGATTGTAAGGACGAGTTACAGGCTACTGATGATCATGGCCCTATTTCAATAGTGATGGTGACTGCCGATCAGGCTCAGGAAATGTCTAACCAAATTCAGTCATCCGAAAACAATGTAGAAGTGGAAGTTTCACAAGCAGATGAGATTCAACATGTGCTTCAGCGAAATCTAACCTGGGCAACAGTTGATGATGCTTCACGTTTGGATGGCGCTAGTGTAGTGTCCTTGGCTGGACATGAAGGTAGTGTCATTGTTTTagggaaaatggaaaatggTCAGATTGTTACACATCGAGATGATGGCCAAGACATTCTTCTCATGGTGGAATTGAAGTACAAAGATGTTCTGCTGCAGGACTTACAAAATCAAGCTCAAAATCAGATCCAGCCGCAAGCTGATTCAGCTCACCTAAAGCAACATGCCATCACATATGCTGCTCCTACTAAGTCGCGGGTCATTAATTATGTTTCCGAACCTCAATCTAACGGTCTCATTAAGGCAGCTCCTCAATTGGCTTTTACAACTGAGGCGCAAGGAATTGCTTCAAATGCCCATACTGTCGCGTACACTGAAGATGAGACTCCCATCACTCTTGGCAAAACTCATGTCCTAGCATATGATGCGCAAGGGAATGCTCAAACCATTGCTTACCCTGGTCTTCAACCACTGACTCTAGCTAAAGGCCAGACCATCAGTTACATTACCGATGGAACAACTTTACCCTCAACGTCACAATTTGCTGACAGTTCCACTGTCCTTGCTAAAGATCAGACCTTAACATTTTCCACTGGAGGAGCTTCTCTTGGATCCAATACTCATGTAATATCTTTTGTACCAGAGGGTGCTTTGGGCCGTTCTCAGATAATAGAGTATACCACTGATGATATTGTTGATGGAAAGGTAACATTTAGCCACATAGAAAACTCTGCCTCTCCTAAAATAGAAAGTATAGTGTTTGAGGACAGTTTATCAGAGAGTATGGGTGAGACAATCACAGGAGATATCAATGATGGTGACCCTGCAAAAAAGGGAGCTTCTGAAAAAGGCTTGAAACCATTTCCATGCAGTGCGTGTCCCAAGAGGTTCATGCGACGGACGAACTTGCGGGCCCACATGGCGCAGCACAGCGACGCCCGGCCACACATCTGCGACACCTGTGGGAAAAGTTTTGCCATGAGGTGGGACCTTACTCTGCATGCCCGTTTACACACGAGCCTTTATCAATGTGATatTTGTGGTAAATCCTTCTCTGGGAAAGGTAAACTGGATAGACACCGGAGAGTCCATTCTGGAGAGCGCCCATTTTCATGCATCACTTGCAACAAGGCATTCTCGGACAAACACAACCTAGAAGCCCATATTAAAACACATTCAGATCAACGGCCGTACACCTGtgctgtgtgcgcgcgctcatTTCGATCCAGGTCACATCTCCGTGCTCACCGAAGAGTTCATAGTCAGGACACTCCCTTTACCTGTCATCTGTGTGGAAAGTCTTTTAAATGGAAAGCAAATTTAAATTTACATCTTAAGGTGCACAATGGAGAACGGGTGAAATGTGATAAGTGTGGAAGGGAGTTTGCCCGAAGAGGAGATTTAGTGCGACATCGGCGCTCCCATGAGGGCCTTCGTCCGCATTCTTGCACTCTCTGCCCTCGAACATACGCCGACAGAGCTGCTCTCAACAAACACTTAAAAAGTCATCAAGAGCATAGACCATTCACCTGCGATATTTGTAACAAGAGTTTCCACTTTTTGTGGTACTTAAATGCCCACAAGAAGATGCATTTGGAAGAGAAGCGGTACAAATGCCATTTGTGTGAAAAGGAGTTTATGAAAAAGGGAGGTCTTACTGCACATCAAAAAATACACAACTCTTATATTTTAGAAGAGGAGAAGCCTGATGGTGTTGTTGGTGTATCTGGAACTGAAAGCAATTCTTTAGAAGGGGTGGAAATCATCCACACTGCACCTCTAGAGCCAGTCGTAAGAATGAAGGTTGAAGATGGAATGGCTGATATAAAGATGGATTTGAGCCACGTTTCTGCACTGAACTCCAACTCAGATTCTGTTGGAGTAGTAATGAGTACCTTAGAAGTAGTGAATCCAGACACAGTTGTTGATTCCTCACTGTTAAATGATGCCAATTTGTGA
Protein Sequence: MEQPPDCKDELQATDDHGPISIVMVTADQAQEMSNQIQSSENNVEVEVSQADEIQHVLQRNLTWATVDDASRLDGASVVSLAGHEGSVIVLGKMENGQIVTHRDDGQDILLMVELKYKDVLLQDLQNQAQNQIQPQADSAHLKQHAITYAAPTKSRVINYVSEPQSNGLIKAAPQLAFTTEAQGIASNAHTVAYTEDETPITLGKTHVLAYDAQGNAQTIAYPGLQPLTLAKGQTISYITDGTTLPSTSQFADSSTVLAKDQTLTFSTGGASLGSNTHVISFVPEGALGRSQIIEYTTDDIVDGKVTFSHIENSASPKIESIVFEDSLSESMGETITGDINDGDPAKKGASEKGLKPFPCSACPKRFMRRTNLRAHMAQHSDARPHICDTCGKSFAMRWDLTLHARLHTSLYQCDICGKSFSGKGKLDRHRRVHSGERPFSCITCNKAFSDKHNLEAHIKTHSDQRPYTCAVCARSFRSRSHLRAHRRVHSQDTPFTCHLCGKSFKWKANLNLHLKVHNGERVKCDKCGREFARRGDLVRHRRSHEGLRPHSCTLCPRTYADRAALNKHLKSHQEHRPFTCDICNKSFHFLWYLNAHKKMHLEEKRYKCHLCEKEFMKKGGLTAHQKIHNSYILEEEKPDGVVGVSGTESNSLEGVEIIHTAPLEPVVRMKVEDGMADIKMDLSHVSALNSNSDSVGVVMSTLEVVNPDTVVDSSLLNDANL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -