Basic Information

Insect: Thrips palmi
Gene Symbol: ZFP42
Assembly: GCA_012932325.1
Location: NW:2159109-2164501[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.25 7.9 6.8 1.7 1 23 151 174 151 175 0.95

2 12 5.2e-05 0.0017 18.4 5.2 1 23 191 213 191 213 0.96

3 12 1.3e-05 0.0004 20.4 1.5 1 23 219 241 219 241 0.97

4 12 0.0002 0.0064 16.6 4.1 1 23 247 269 247 269 0.98

5 12 3.2e-06 0.0001 22.2 0.4 1 23 275 297 275 297 0.97

6 12 0.0014 0.045 13.9 0.2 1 23 303 325 303 325 0.97

7 12 2.3e-05 0.00074 19.5 3.5 1 22 335 356 335 356 0.96

8 12 0.031 1 9.7 3.6 1 23 362 385 362 385 0.96

9 12 0.00093 0.029 14.5 2.1 1 23 400 422 400 422 0.98

10 12 1.1e-05 0.00036 20.5 0.1 1 23 428 450 428 450 0.99

11 12 2.1e-09 6.6e-08 32.2 0.2 1 23 456 478 456 478 0.99

12 12 3.7e-06 0.00012 22.0 2.0 1 23 484 506 484 506 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.25	7.9	6.8	1.7	1	23	151	174	151	175	0.95
2	12	5.2e-05	0.0017	18.4	5.2	1	23	191	213	191	213	0.96
3	12	1.3e-05	0.0004	20.4	1.5	1	23	219	241	219	241	0.97
4	12	0.0002	0.0064	16.6	4.1	1	23	247	269	247	269	0.98
5	12	3.2e-06	0.0001	22.2	0.4	1	23	275	297	275	297	0.97
6	12	0.0014	0.045	13.9	0.2	1	23	303	325	303	325	0.97
7	12	2.3e-05	0.00074	19.5	3.5	1	22	335	356	335	356	0.96
8	12	0.031	1	9.7	3.6	1	23	362	385	362	385	0.96
9	12	0.00093	0.029	14.5	2.1	1	23	400	422	400	422	0.98
10	12	1.1e-05	0.00036	20.5	0.1	1	23	428	450	428	450	0.99
11	12	2.1e-09	6.6e-08	32.2	0.2	1	23	456	478	456	478	0.99
12	12	3.7e-06	0.00012	22.0	2.0	1	23	484	506	484	506	0.98

Sequence Information

Coding Sequence: ATGTCTGGGGAAGAAACATTGCAACCTGGAAAAGCCATGGAAACCTCCCAAAATCAGTTTATTCGCAGACCCACACGGTCGTCATTACGAATTTCTCAAGCCAACTCTAAACCAAAGGCAATAGATATAAGTTCTGAAGATGAAGCCAGCTTCCCCAACTACCCTGAAGACTGGAGTGATACAGAACAAGATGATGGTTCCGAGTTTGCTGGGATGTTTCTGGACATTGACGTCCATGAAGACCATGAAAGTAGCCTAGAGGCACCAGAAGAAGAGCCACCTCTGCATGCAGAACAATTGAAACCAAAAGGCATTATAGCCAAGCTATCTCAGAAACTTAACTCCAAGTTAAAGGCTGTGTACGCTCCACGCCCAACTGATTCCCTTCTAGCATGTCTAGAACCTGAGGTAACCGTGGCTACAGGTGGGACTATTACATCTGGAGGGGTTCATGTTTGCCCATGGTGTCCTCTTACTTCCTCATCATTAGAAATTCTTGAAAACCACATTACAACCTGCCATCATGTGTCAGCTGGTGAACAAACTGATGAAGGCACATCAGAACATCAACACATTTGTAACGAATGTGGTAAAGCTTTTGTCAAAAGTTGCCATCTGAAACGTCATTATATCATCCATACTGGAGAGCGACCATTTATTTGTGTCGACTGTGGGGAACGCTTTGCAACATCAAGCTGCCTAACAACTCATCGAAGAGAGCACACCAGTGAACGTCCCTTCAATTGTAAACATTGCTCGAAAACATTTTCTTCCATTTTCCTTCTCAGGCTCCATCTGAAAATTCATGAAGCTGAGAGACCATTTGAATGCTCTATTTGTGGAGAACGTTTTACCATGAAGAGCTACTTGAGGATCCATCTGAACGGTCATATTGGTGACAAAGCTTTCATGTGCTTCAACTGTGGGGATGGATTTGCTACAAAAGATGACCTAATGGAACATCGCCAAATTCATACTAGTAGCAGTGCAGAATGCCACAAATACTATTGTGAACATTGTGGACACTCATTCCAACAGAAACAGAACTTCAATAACCACATGAGAGTTCAGGAGGGTGACAATCACCCCTGTTATCTGTGTTTCAAGCAATTCCCACAGTTCAATAAAATGAAGGCACATATGCGTTATCAACACAAAGTTGAACCACCAGATTCCATGTGTAAAAATACAGGAGTCTTTGTATGTCTGCACTGTCAAAAAGAATTTGGCCATGTTGTGCCTTTGAAGCGTCACTTACGTGTTCATTCTGGAAATAAGCCATTCAAATGCGCGGATTGTGGAGAGAGCTTTCGTGGAGGGAATGACCTAAAAGTTCACATTCGAATCCATACGGGAGAGCGTCCGTTCACTTGCCCTGAATGTGGGGAGAGTTTTACTCAAAAAGGCAATTTGACAGTGCACATCAGGACCCACACAGGAGAAAGACCTTTTGAGTGTGACATTTGTGGTCGTTGTTTCCTGAAGAGCAGTAATTTAAAAGAACACATGAAAGTCCATCAAGATGGAAGAGGGAAGAGGACAGGTGTGGCTGCAGGGGGAAGACCACCTCGTTTCTTAATTGAGCAAGAGCAGCTTGAAAGAAGGGGATATGTTACAGTGACAGCTGATAGCAATGTTCCAACAGCTGAGGTCTCAGTTGTCAAGAGAGTTTCCGAAATGGCAAAGGAATCAAGCATTTTCAGAGCAGCCATAGCTGAGCGTTTGAAAAAAACAGGATTTGTGTCAATTAAGAAGAATGAAGTGAATTACCAAACCACCCATGGAGATAATTTTGGTGATAAAATTGCTGAGCGCTTGAAGGAAACTGGGGTACTTTCATTTGGGAATGGAAAAATATCTTTGAAACTTATAAATGTGAAGAATGATGCCCACAATAATTTAGCTTGA
Protein Sequence: MSGEETLQPGKAMETSQNQFIRRPTRSSLRISQANSKPKAIDISSEDEASFPNYPEDWSDTEQDDGSEFAGMFLDIDVHEDHESSLEAPEEEPPLHAEQLKPKGIIAKLSQKLNSKLKAVYAPRPTDSLLACLEPEVTVATGGTITSGGVHVCPWCPLTSSSLEILENHITTCHHVSAGEQTDEGTSEHQHICNECGKAFVKSCHLKRHYIIHTGERPFICVDCGERFATSSCLTTHRREHTSERPFNCKHCSKTFSSIFLLRLHLKIHEAERPFECSICGERFTMKSYLRIHLNGHIGDKAFMCFNCGDGFATKDDLMEHRQIHTSSSAECHKYYCEHCGHSFQQKQNFNNHMRVQEGDNHPCYLCFKQFPQFNKMKAHMRYQHKVEPPDSMCKNTGVFVCLHCQKEFGHVVPLKRHLRVHSGNKPFKCADCGESFRGGNDLKVHIRIHTGERPFTCPECGESFTQKGNLTVHIRTHTGERPFECDICGRCFLKSSNLKEHMKVHQDGRGKRTGVAAGGRPPRFLIEQEQLERRGYVTVTADSNVPTAEVSVVKRVSEMAKESSIFRAAIAERLKKTGFVSIKKNEVNYQTTHGDNFGDKIAERLKETGVLSFGNGKISLKLINVKNDAHNNLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -