Tpal000833.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- ZBTB40
- Assembly
- GCA_012932325.1
- Location
- NW:10630414-10634609[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.25 8.1 6.8 0.2 2 23 363 385 362 385 0.91 2 15 0.0022 0.07 13.3 1.2 1 23 403 425 403 425 0.97 3 15 0.00066 0.021 14.9 0.7 2 23 438 460 438 460 0.95 4 15 1.2e-05 0.00039 20.4 0.2 1 23 468 490 468 490 0.98 5 15 0.00036 0.012 15.8 5.7 1 23 496 518 496 518 0.96 6 15 0.00036 0.011 15.8 2.0 1 23 525 547 525 547 0.96 7 15 0.00053 0.017 15.2 4.2 1 23 553 575 553 575 0.97 8 15 2.6e-06 8.4e-05 22.5 0.4 1 23 581 603 581 603 0.98 9 15 0.00045 0.014 15.5 0.8 1 23 609 631 609 631 0.98 10 15 2.5e-05 0.00079 19.4 0.7 2 23 647 668 646 668 0.97 11 15 0.00043 0.014 15.5 1.3 1 23 673 696 673 696 0.98 12 15 0.0015 0.049 13.8 2.5 1 23 730 752 730 752 0.98 13 15 8.5e-05 0.0027 17.7 0.2 3 23 760 780 758 780 0.97 14 15 1.8e-05 0.00056 19.9 4.0 1 23 786 808 786 808 0.98 15 15 2.3e-05 0.00072 19.6 4.4 1 23 814 836 814 837 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCCAAGGATTCACTTCAATCGTTGATTATGGAGAACGATATCACCGAGTCTAATGCAGTGGTTGGCGTAACTCATAAACCCATCATGAAGGGTGGCCCAAGTTTGTCCCAGGAGCCAACAATTTTTAGCAGGGACTTAAAAAATGATAGCTGTTCTATTGTCGCCTTTGAAATGCAAAACTATGGCAACTCAAATATTGCAGAGGGCTCGTCATTAAAAGTTATTAATTTATCAGACTTCATACCAACTGTATGTGAGGATGGCTCTTATCAGACAGTGCTTGTGTCTCAATCAAATTCGAATCTCATTGAAACAAGTCAAACTGCACCTCAGCAGTCTCAAATATTGCTTCTGGCTTCTGAGCCTGTGCTAAGCAGTCCTGTTCAAGATGGTTTGCGCACTGAGACAATACAGGAAAAGATTTTAGAGAATCAGAAATATTTTGGCATTTGTAGAATATGTGCAAATGAAATACTGGAGGGCCTTCCACTGTTCCATAACCAGGGGTTGACTTTGGAAATTATCGAGAAAATTCATCGCTGTCTTCCTATAAAGGTTTCAGTCAATGATGGCTTTCCACAGCATGTTTGTGATGAGTGTGTCTCAAAACTTGATATAGCTGATGATCTGTTCAAACTGAGTATTGTAGGAAATGCTAAACTTCAAGCTATGAACAACAGTTGGACTCAGCATGTCAAGAAAGAAAACATCCCCAATGAAATGGGTGACAAAAACCCTGATGGAATAGTTTCAAGTGAAGAGATGGTAGTACAGGGAACAGAACAAACAAGCACTGAAATTGTACCACAAGAAAATGCAGAAATATCGAATGTGGAAATAATGCCACAGAGAGATACTGATATACCCCAAAGCATTGAAATGATCCAAGAAAGTTTAGTCTTGAgcaaaaatattaaaataatATCTCAAGGAAATTCTGAAGCATCACAAAGTTTTGAAATGGGTCCTCCGAAAGAAGAACAAATGGAAGAGCCTTTTGAGGCTGTAGTTGATGTTGATGATCAGAGTATGATTGATTCTCCTCAGTTGCCAAACACAAATCGTGAAAAAAGggagTGGCATTGTAATGATTGTGGCTTTGTAGCTTTGAGTCAGTCCTCACTAAAGCTACACATTGAAGCCCAACACAATGAATGCTCAAGTGAAGTAAAGCACAAGCATCCATCAGAAGAAAAGTTGTTTTCATGTGAATTTTGTGATAAAAACTTTCAGACTGAAGTAAAATGGAAGAGGCATGTTCTGTCTCATACCAAGTTACCAATGcaggagagagacagtggtGAAAAATGTACTAAGTGTGGTGAAGAATTTTTTAGTGTGAAAGAATTACAGAGACATTTAAAAGATGTCCATAATCTGAAACCAGATCGTAAATATGAATGTGACATATGTGGTAGATGCTATGGTAATGCAAGTGGCCTTAATATACATCGAGCAACTCATTCAAATGAAACTCCTTACCTATGTGATATTTGTGGGAAAAGTTTCAAGCATAGAGCAAATTTGCGATGCCACAAAAGATCTCATGGCAATGAAACACATCGCCATGCCTGTGATATCTGCCCCAAATTGTTCCCTTCTAAGTTTCATTTAAATGAGCATAGAAATGTACATTTAAATATTACTCCATATTCTTGTACAGTCTGTGATAAAAAGTTCCACCGTCGAATACAGTTAAGACAGCACAAAACCGTGCACAATAGCGGTAGTACATTCGAATGCCCCCAATGTGGAGCAGGCTTTAATCGCAGGGGTAACATGACACAACATATGAAGCGCCACTCAAATGAGCGAAAATTTTCTTGCAAGGTTTGTAAACAGTCATTTGAAACTTTAAGTGAGGTGGTGCAACACCGTCGCGAGCACACAGTTCAAGAAATCAAAGATAACTCTGAGGAGAAGAAACAGTTAACGTGCAGTCAGTGCCCCAAAATATTTTCAACCTCCAAGGGCCTAGAGGAGCATACAAAAACACATTCAAATATTAGCTTCGAATGTGAACTTTGCAACAAGCAATTATCAAACCGCAGGACTTTAGAATATCACATTCGCTCTTTTCATACTCAGGAGCGCCCATTCTCATGTCAATTTTGCTCTATGTCATTTCTATCCCGTGAGGCTTGTACCGTTCATGAACGGCTCCACACTGGAGAGAAGCCTTATACTTGTCGGGAGTGCAACATGAGCTTCCGCTGCTCTAGCAATTTAGCTCAACATTTGGGGACTCACAATGATGATCGTCCTTGGGCCTGTGATCAATGCCCCAAACGCTTCAAGAGAAATGGTATTTTACTAGTGCATATGCGCACTCACACTGGGGAAAAACCCTTCTGCTGTGACATTTGTGGTCGCAGGTTTACCCAAAAGAATGACATGCTAAAACACCAACAGACTCACACAACcaatcaaaattttgtatGTGGTGAATGTCATTGGCCTTTCTACACTCGCAAAGAATTAAATAAACATAGACGAACGCACCACGTAATATCTAGAGCTGTGAAAACTACAAATAGTGAACCAAAACTTCCATCCCAATCTCAGGCTCTTGTGATCTCTGATAATATGATCAATTTTCCAATCACAATCCTGGAAGGAAGTGATGTAGTTGTTCACCAGATTGAAGATTTAAGGCACGCTCAAATACTGGAAATTGATCCTCTGCTCCAAGGTGTTGTTCCAGATTCCCAGATTCTCACAATTCAGTCAGCAAGTAATTCAACAGACCCTCAATTAACTTCATTTGCCAGTGGGAGTGGGACCACTTTGTCTGTAATTCCCTCATGTTCTCAGCAGAACTGGTAG
- Protein Sequence
- MEPKDSLQSLIMENDITESNAVVGVTHKPIMKGGPSLSQEPTIFSRDLKNDSCSIVAFEMQNYGNSNIAEGSSLKVINLSDFIPTVCEDGSYQTVLVSQSNSNLIETSQTAPQQSQILLLASEPVLSSPVQDGLRTETIQEKILENQKYFGICRICANEILEGLPLFHNQGLTLEIIEKIHRCLPIKVSVNDGFPQHVCDECVSKLDIADDLFKLSIVGNAKLQAMNNSWTQHVKKENIPNEMGDKNPDGIVSSEEMVVQGTEQTSTEIVPQENAEISNVEIMPQRDTDIPQSIEMIQESLVLSKNIKIISQGNSEASQSFEMGPPKEEQMEEPFEAVVDVDDQSMIDSPQLPNTNREKREWHCNDCGFVALSQSSLKLHIEAQHNECSSEVKHKHPSEEKLFSCEFCDKNFQTEVKWKRHVLSHTKLPMQERDSGEKCTKCGEEFFSVKELQRHLKDVHNLKPDRKYECDICGRCYGNASGLNIHRATHSNETPYLCDICGKSFKHRANLRCHKRSHGNETHRHACDICPKLFPSKFHLNEHRNVHLNITPYSCTVCDKKFHRRIQLRQHKTVHNSGSTFECPQCGAGFNRRGNMTQHMKRHSNERKFSCKVCKQSFETLSEVVQHRREHTVQEIKDNSEEKKQLTCSQCPKIFSTSKGLEEHTKTHSNISFECELCNKQLSNRRTLEYHIRSFHTQERPFSCQFCSMSFLSREACTVHERLHTGEKPYTCRECNMSFRCSSNLAQHLGTHNDDRPWACDQCPKRFKRNGILLVHMRTHTGEKPFCCDICGRRFTQKNDMLKHQQTHTTNQNFVCGECHWPFYTRKELNKHRRTHHVISRAVKTTNSEPKLPSQSQALVISDNMINFPITILEGSDVVVHQIEDLRHAQILEIDPLLQGVVPDSQILTIQSASNSTDPQLTSFASGSGTTLSVIPSCSQQNW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -