Tpal010007.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
lola
Assembly
GCA_012932325.1
Location
NW:13054882-13158563[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.00033 0.01 15.9 0.8 1 23 449 471 449 471 0.98
2 30 0.0013 0.041 14.0 2.0 1 23 477 499 477 499 0.94
3 30 0.0045 0.14 12.3 0.3 2 23 510 532 509 533 0.94
4 30 0.02 0.64 10.3 0.2 2 23 539 561 538 561 0.92
5 30 0.0017 0.056 13.6 0.1 2 23 585 606 584 606 0.95
6 30 0.00016 0.005 16.9 4.3 1 23 612 634 612 634 0.98
7 30 0.00038 0.012 15.7 0.7 2 23 648 669 647 669 0.97
8 30 0.0047 0.15 12.3 2.9 1 23 682 704 682 704 0.99
9 30 0.72 23 5.4 0.2 1 21 735 755 735 756 0.93
10 30 0.00032 0.01 15.9 1.2 1 23 772 794 772 794 0.97
11 30 0.0013 0.042 14.0 0.6 1 23 828 850 828 850 0.98
12 30 0.016 0.52 10.6 0.5 2 23 895 917 894 917 0.95
13 30 0.026 0.84 9.9 1.1 1 23 959 982 959 982 0.95
14 30 0.058 1.8 8.8 2.4 1 23 1001 1023 1001 1023 0.95
15 30 1 33 4.9 0.1 2 23 1043 1064 1042 1064 0.95
16 30 0.068 2.1 8.6 1.6 1 23 1131 1153 1131 1153 0.98
17 30 0.36 11 6.3 0.1 1 23 1172 1194 1172 1194 0.97
18 30 0.32 10 6.5 0.8 1 23 1218 1240 1218 1240 0.96
19 30 1.7 55 4.2 0.5 2 23 1301 1322 1300 1322 0.96
20 30 0.0029 0.091 12.9 0.4 2 23 1376 1397 1375 1397 0.97
21 30 0.69 22 5.4 0.1 1 23 1415 1437 1415 1437 0.91
22 30 0.3 9.5 6.6 1.3 1 23 1512 1535 1512 1535 0.92
23 30 1.6 52 4.3 6.6 1 23 1562 1585 1562 1585 0.94
24 30 0.033 1 9.6 0.4 1 23 1603 1625 1603 1625 0.97
25 30 0.13 4 7.8 2.2 1 23 1732 1754 1732 1754 0.97
26 30 0.021 0.68 10.2 0.9 2 23 1832 1853 1831 1853 0.96
27 30 6.1e-05 0.0019 18.2 3.1 1 23 1862 1884 1862 1884 0.99
28 30 0.0025 0.08 13.1 1.7 1 23 1922 1945 1922 1945 0.98
29 30 5.3e-05 0.0017 18.4 0.1 1 23 1977 1999 1977 1999 0.98
30 30 0.00023 0.0074 16.4 1.8 1 23 2005 2027 2005 2027 0.98

Sequence Information

Coding Sequence
ATGGCAGACCAACAGTTCTGTCTAAGATGGAACAACCACCAAAGCACACTGATCTCGGTGTTCGACTCTCTTCTGGAGAGGGGTGCTATGGTGGATTGCACTCTAGCAGCAGAGGGCCAATGTCTTCAAGCCCACAAAGTTGTCCTCTCAGCATGCAGTCCATATTTAGAGACGCTGCTGAGTCAGCATTACGACAAGCATCCTATTCTCCTACTCAAGGATGTGAAATTCTACGAGCTTCAAGCCATGATGGACTACATGTACCGTGGGGAAGTGAATGTGGCTCAAGACAAATTAGGAATGTTTTTGAAAGCAGCTGAATCTCTTCAAATTAAGGGATTGTCAGACAGTGGAGGCAATGAACCACCTGACACGGGAGGGGGGACAAGTAGTAAACGGACTAGTAAAGCTGTACCAGTGACAAATATTCCACGTTCTGGTGGTGGATTAACTGTGGAAAGGCGAAGGCCACAACCTCAAGTTTCGCAAGTGGTAGACATTCCTTCAGATAGTGGTTCCCGTGATGGTAGTGAATCCCCTTCCTTAAGAAGAAAACGACGGCGAAGAACATCTGGTGATGAAAATACTGCTGAGGGCGACTCTTCTAACACTGGGGACGTGTCACGCACCCAGCCCTCTTCAGCCCCCCTTAGTTCAGACCAAGTGCCAATGAATGGTTCTGCTGATAGTAATGCCTTAGGAATTCTTTCATCCCTTATGGATGGAACTGTTGAGACTGATAATAGTGTACAAGAACCCGGACCGTCATTAGGAAGTTCAAGTCAGACCCAGCCTTCACAACGGATACGAGAAAAAACGGAACCCACCACTGGCCAAATGATTCAGCCTAAATCTGAGTACCTTGAAACTGAAGAAAATATTGAGGATCTTACTCTTGATGACGATGGCATGGACAGTAACCAGGACATGGATGCAGGACCTTCTCAACGGCAAGgATATCAATGGCATATGGGTGACCAAGGAGCGGATGAAGTTTTCATGGCAGCACAAGAAGCAGTTGGTGCTAACAGAGATGCACAAGCTCTCATCATCGACTCGGTGGTGTCGCTGTCCATCAAGCAGGACCTGATCGACGACTACGAGATCGAGTACGACGAGTGGGACGACGACTGGGCCGCCATGCACCCCGCCGACGAGCCGGACCCGGAAGTGCGGCAGCCCGTCGTGGTGCTGGAGAAGATGCGcctggacgacgcggcgcgccgcagaggCCCCGACCGGCTGACGTGCGTGGAGCGCctcgagggcgcggcgccctacGACGAGGTGCAgtgccgcccgggccgtgcgggccgccccctcaACGAGGACCCCGCGCGGCCCTACAGCTGCGACAGGTGCCCCGCGCGCTTCAAGACGAAGCAGACCCTGGTGGTGCACTACCGCGTTCACACCGGCGAGAAGCCCTTCGCCTGCTCGCACTGCCCGCTGCGCTTCCGACACAGCAGCTCGCTGGCCAGCCACGAGCTGGGCCACAAGGCGGGCCACAAGGTGGGCCTGCCGCTGGTCTGCGagcgctgcgggggccgctTCCGCCTGCAgaaggccctggcggcgcacaTGCGCGAGGTGCACCACGTGGAGCGTATGCTGAAGTGCGGCGTGTGCAAGATCCTCTTCGCCACGCGctccgccctgcagcagcacactGCTcagcagcacgccccgccgccgcagcccgcaccgacgcccgcgcagcagcagcaggccgaggaAGCCAACAAGTCAGTGCCTTGCTACGTCTGTGATAAGGAGTTCTCCTCCAACGCCGCCATGTGGGCGCACACGCGCTTCCACGGCTCCGGGGACCGCTTCAGCTGCCGGTCGTGCCAGAAGCACTTCACGTCGTGGATGGCGCTGCGCAAGCACCTGCGGACCCACAAccaggccggcaaggcgggcaaggcctcGTCGCTTCTCAAGTGCAAGATGTGCCCGATGCGCTTCGCCGCTCGCAGCCAGCTGCTGACCCACCTCAAGACGCACGACCGCATGGCTGCCATGGCAGGCGACAAGCTGTACTACCGCTGCAGCAAGTGCCTGGAGCGGTTCGTGGGCCGGAAGAGCCTGCACGCCCACCTCAAGACTCACCGCGAGGAGGAAGATCCGCCACCtcccgccctgcagcctgaaGTCCcattggccgcgccggccgcgccggccgcgccctcaGCCAAGGTGTACCCGTGCGAGACGTGCCCTCTAGTGTTCGAGAAGTACAAGTCCAAGTGGAACCACCGCAAGGTGtgtcccggcgccgcgcccaagGTGGCTCGCCTTTACGGCAAGGCCTTCGCCTGCGGCACGTGCGGCCTGCGCTTCAAGACGAGGAAGTTGCTGTACTGGCACCGGCAGACGCACGGCGTCAAGGCcgagctgcaggccgtggacgacgacgagtccacgcagggcccgcagcaggccacgcagcaggccccgcaggccagcccgcagaAGGTGTTCCGCTGCGGCAAGTGCTCCCAGCCTTTCCCCGACCGCCGAGCCCTGTTCGCGCACTCCAAGACGCACTCGGGGGCCATGGTGGTGATGAAcccggacgacgccgccatgcccgaGGCTCCGGTGGCCCCGAATGAAACTGGAGACGTCGCGGACCAGATGACGCCTCAGTTAGACGACAAGTTCTTGAAGAACTCCATGCGGTGCAGCCGGTGCAGCAAGCGCTTCGCTGGCAGGAAGGCCCTGTACGCGCACCTCAAGGAGGCGCACGGTCGGCGGTTCGGGGGCTCTGGCTCCACCACCCCTGCGACCACTCCCGCCACTCAGACGACCCCGGCGACCACCCCCCAGGCTACCTCCCAGGACGACTCAGCAGCCGCCGACGCCAAGGCCTATCGCTGTCGCAAGTGCCCCGAGGTGTTTCCGGACAAGAAGAGCCAGATGCTTCACCACGAGATGGTGCACACCGCCGCCATGGACATTGCCGTCAAGGTGGAGGCCGATGTCAAGGCCAAGAAGTACCGCTGCACCAAGTGCCCTGAGGTCTTTGTCAGCAAGAAGCAGCACTGGGAGCACTACAAGGAGCACGCACCCGAGGCCGCCGAACAGATGAGGAGGGTGGCGAGCGTCGCCCAGCGGAGCTTGAAGTGTGGTGCCTGCGCCCAAGAGTTCGAGGACAGGATGAGCCTCTGGTGGCACTTCAGGGAGCACATGGAGGGCGAAGAGAAGGTGGAGGACACGTGTGTGGAGGTGCGCGGCGATCTCGGCAAGAACGATGTGGACCCCTTGGCCACTTACGTGAGGTGCAGCCTGTGCCCGGCCGAGTTCCCGGGCGAGACGGAGCACTGGCAGCACTACAAGGAGGTGCATCTTGCGGACAGGGGCCCCGAGTGGCGCCCCACGCACCGCTACCGCTGCACCCAGTGCTCGGAAACATTCCCCGACGAAGGCAGCCACTGGCGCCACTTCAGGGTCCACGCCGACGAGCCGCTCCACAAGAAGTACGCCATGCAGAAGACGAACCAGGATCAGTACCGGTGTGCAAGCTGCTCCGAAGTGTTCGACGACCTGGAGAGTCAGTGGTGGCACTACAAGGCCCACGCCGAcccggagcacgccgacgacggcgagcaccTCGAGGACCCCGAGGACCCCCTGGCCGTCGGGACGTTCCCCTGCGCCAGCTGCTCCGAGTGCTTCCCCGACAAGCGCAGTCGCTGGTGGCACGAGCGGGACCACGCCCCCGGCGTGAGCCTCAGcttcgtggtggtggcgcgccAGCCCGGGTACCGCTGCCTGCTGTGCTCGGACCGAGGCTCGGACGTGttcgccgacgaggacgcccaCTGGGACCATTACCGACGCCATTACCAGTCCTTGGACGAGTCCTACCAGTTGGTGCAAGGCGAGCTGCAGCTGCAATGCGACGAGTGCTGCGGCCGGTTCGAGGACGAGGACAGCTACTGGGAGCACTACCGCGTCCACTGCGATGAAGAGCTGTGCCACCCAGAGGACGCCAAGCGAGACGCAGTGGAGTACCGCTGCCTCAAGTGCGACCAGCTGTCGCACAGCCTGGAGACGCACTGGTGGCACTACCGCAGCCACACGGTGCACGCCGACGTGGAGGATGACGCCGCGGAGCAACGCTGCAGTCGGTGCGAGGAGCGCTTCAACACTCCGGCCGAGCTGTGGTGGCACTTCCGCCAGCACGTGGAGGAGGACAACGGCCCCGTGTGCGAGGAGGTACGGTCCAAGCAGTCGTTTCCGTGCGCCAAGTGCGAGGAAGTGTTCCCGGACCGCCGCAGCCGCTTCCTGCACAGCGCCATCCACGTGActccgcgtgccgccgccgcggcccccgcccctagcctgcccagcctgcccagcgGCGAGTGGGGCTACCAGTGCACGCCCTGCAAGGAGATCTTCCTGGACACGCAGAGCCACTGGTGGCACTACAAGAcggtgcacggcgcggacgccggACCCGGCTCGTACGAAGTGGTGGAGCTGACGGACGACCCTGGCGAGGACCCCACGACGGCGAAGCGCTACCAGTGCAGCAAGTGCGGCGACTCGTTCCCGGACCTCAAGGCGCACCGCCGTCACTGGAAGCAGGTGCACGAAGTGGCtctcccggccgccgcgaccaaGCCGCCGCCCAAggccaaagcggccaaagcgcCGTCCAAGGCCAAGGGCTTTCACTGCAGCAAGTGCCCCGAAGTGTTCCGCGACCGCAAGAGCCACTTCCACCACTACAGGGCAGCACACACCGGCACCGCTCTCGACATGGACATGGAGGATGTGTACGAGCCCAAGAACTTTAACTGCAGCCAGTGCCCTGAGGTGTTCCCCGACCGGGAGAGTCACTGGTGGCACTACCGCGTGCACTGCAGTGAGACTGAGGCCGCCGCGGTTGAGGTGACCGCAGAAGAAACACCCGGCGAACGGGCGACTGCTGAGGCAAGCTTGGAAGCAGCCTCCGAGGCAGCCCCAGAGACAAGTGAAGCAATAGAGTCGACTGGAGCAACTGAAGCTGCAGTGGATGGCGAGGCCACTGTGGCGAGTGAGGCTACTGAGGCCAGTGTGACTGATAAAGCTACTGAGGCCACTGTGGCTGGTGGGGCAAAGGCGGAGATTACTTTAGCGGCAGACGGATCCACGACAGCGGCTCTGGAGTCATCACCACAGTTTCCACGGGCGAAGGAGTATCGCTGCAGCAAGTGCCCGGAAGTGTTCCACGACCTGGAGAGTCACTGGTGGCACTATCGCATTCACGTGGATCCAGAGTTCAGCGCCTCCATCAACGGAGACGCGGCCCACGAGAAGGGCGAGACGTCGGGCAGGTTTCACTGCACCAGGTGCCCCGGGTCCAGCTTCCCAGACCGGCGCGCGCACTGGGCACACGTCAAAGACATGCACCGCTCGAGCTCAGCGTCGGAGCAAGGCAGCGACAcgtcctccacgacgccgtccaACCCACCGGCTGCCACCCCGACTGCCTTCCTGACTTGCGGCAGCTGCCCGCTGACCTTCACCAGCGTCAAGAAGCTTCAAACACACGAGAAGCGGCACGCTGACGATGGTGTACCCAAGCCGTTCAAGTGCCACCTGTGCCCACAGTCGTTCCGGTTTAACATCAACCTCTTCAACCACATCAAGATCCACGGCCAGAGGGCGGCTGGTTCCGAGGCCTCTCCTTCGGCGGCCACGGGGCTGAGCACGGAACTAGCtgtcgccgcccagcccgcagccacgccggTCGCGCCTGCGCGCTGCTTCAAGTGCCCCAAGTGCCCGGCGCGCTTCAAGGCGCGCCACATGCTGTGGGCGCACTCCAAAACCAGGCACGCCTCCGCCaagaccgggccggccgccaagaccgccgccaagaccgccgccaagcccgcgcCTCCCAAGAAGGCCAGGCTGGACATCGAGGACTACCCCTGCGACAAGTGCGAGGCCGTGTTTGCGACGTCGAGCGGGCTGAGCTCGCACCAGCGCGTGCACGCCGACGTGAAGCCTTTCTCGTGCCAACAGTGCCGCGCACGATTCACCCTGTCCAGCAACCTGCTGCGCCACATGAAGCTGCACAACAAGGTGAGCCTCAAGGCGAGCCTCAAGGCACTCGTCTGCTGTCGCCAGCAGTTCAGCTCGCTGGCCGCCAAGAAGGAACACGTCCGCACGGCGCAccccccgcgcaccgccgagTGCTGA
Protein Sequence
MADQQFCLRWNNHQSTLISVFDSLLERGAMVDCTLAAEGQCLQAHKVVLSACSPYLETLLSQHYDKHPILLLKDVKFYELQAMMDYMYRGEVNVAQDKLGMFLKAAESLQIKGLSDSGGNEPPDTGGGTSSKRTSKAVPVTNIPRSGGGLTVERRRPQPQVSQVVDIPSDSGSRDGSESPSLRRKRRRRTSGDENTAEGDSSNTGDVSRTQPSSAPLSSDQVPMNGSADSNALGILSSLMDGTVETDNSVQEPGPSLGSSSQTQPSQRIREKTEPTTGQMIQPKSEYLETEENIEDLTLDDDGMDSNQDMDAGPSQRQGYQWHMGDQGADEVFMAAQEAVGANRDAQALIIDSVVSLSIKQDLIDDYEIEYDEWDDDWAAMHPADEPDPEVRQPVVVLEKMRLDDAARRRGPDRLTCVERLEGAAPYDEVQCRPGRAGRPLNEDPARPYSCDRCPARFKTKQTLVVHYRVHTGEKPFACSHCPLRFRHSSSLASHELGHKAGHKVGLPLVCERCGGRFRLQKALAAHMREVHHVERMLKCGVCKILFATRSALQQHTAQQHAPPPQPAPTPAQQQQAEEANKSVPCYVCDKEFSSNAAMWAHTRFHGSGDRFSCRSCQKHFTSWMALRKHLRTHNQAGKAGKASSLLKCKMCPMRFAARSQLLTHLKTHDRMAAMAGDKLYYRCSKCLERFVGRKSLHAHLKTHREEEDPPPPALQPEVPLAAPAAPAAPSAKVYPCETCPLVFEKYKSKWNHRKVCPGAAPKVARLYGKAFACGTCGLRFKTRKLLYWHRQTHGVKAELQAVDDDESTQGPQQATQQAPQASPQKVFRCGKCSQPFPDRRALFAHSKTHSGAMVVMNPDDAAMPEAPVAPNETGDVADQMTPQLDDKFLKNSMRCSRCSKRFAGRKALYAHLKEAHGRRFGGSGSTTPATTPATQTTPATTPQATSQDDSAAADAKAYRCRKCPEVFPDKKSQMLHHEMVHTAAMDIAVKVEADVKAKKYRCTKCPEVFVSKKQHWEHYKEHAPEAAEQMRRVASVAQRSLKCGACAQEFEDRMSLWWHFREHMEGEEKVEDTCVEVRGDLGKNDVDPLATYVRCSLCPAEFPGETEHWQHYKEVHLADRGPEWRPTHRYRCTQCSETFPDEGSHWRHFRVHADEPLHKKYAMQKTNQDQYRCASCSEVFDDLESQWWHYKAHADPEHADDGEHLEDPEDPLAVGTFPCASCSECFPDKRSRWWHERDHAPGVSLSFVVVARQPGYRCLLCSDRGSDVFADEDAHWDHYRRHYQSLDESYQLVQGELQLQCDECCGRFEDEDSYWEHYRVHCDEELCHPEDAKRDAVEYRCLKCDQLSHSLETHWWHYRSHTVHADVEDDAAEQRCSRCEERFNTPAELWWHFRQHVEEDNGPVCEEVRSKQSFPCAKCEEVFPDRRSRFLHSAIHVTPRAAAAAPAPSLPSLPSGEWGYQCTPCKEIFLDTQSHWWHYKTVHGADAGPGSYEVVELTDDPGEDPTTAKRYQCSKCGDSFPDLKAHRRHWKQVHEVALPAAATKPPPKAKAAKAPSKAKGFHCSKCPEVFRDRKSHFHHYRAAHTGTALDMDMEDVYEPKNFNCSQCPEVFPDRESHWWHYRVHCSETEAAAVEVTAEETPGERATAEASLEAASEAAPETSEAIESTGATEAAVDGEATVASEATEASVTDKATEATVAGGAKAEITLAADGSTTAALESSPQFPRAKEYRCSKCPEVFHDLESHWWHYRIHVDPEFSASINGDAAHEKGETSGRFHCTRCPGSSFPDRRAHWAHVKDMHRSSSASEQGSDTSSTTPSNPPAATPTAFLTCGSCPLTFTSVKKLQTHEKRHADDGVPKPFKCHLCPQSFRFNINLFNHIKIHGQRAAGSEASPSAATGLSTELAVAAQPAATPVAPARCFKCPKCPARFKARHMLWAHSKTRHASAKTGPAAKTAAKTAAKPAPPKKARLDIEDYPCDKCEAVFATSSGLSSHQRVHADVKPFSCQQCRARFTLSSNLLRHMKLHNKVSLKASLKALVCCRQQFSSLAAKKEHVRTAHPPRTAEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01435126;
90% Identity
iTF_01435126;
80% Identity
iTF_01435126;