Tpal001444.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:9490468-9496311[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.2 1e+02 3.4 1.9 1 19 473 491 473 493 0.94 2 15 0.00013 0.0041 17.2 0.1 1 20 501 520 501 522 0.95 3 15 0.39 12 6.2 0.1 1 12 532 543 532 545 0.89 4 15 3.9e-05 0.0012 18.8 0.1 2 23 564 586 563 586 0.95 5 15 8.8e-05 0.0028 17.7 0.4 1 23 592 614 592 614 0.98 6 15 0.00043 0.014 15.5 0.1 1 23 620 642 620 642 0.94 7 15 9.7e-08 3.1e-06 27.0 4.3 1 23 648 670 648 670 0.99 8 15 5.2 1.6e+02 2.7 0.2 1 23 678 702 678 702 0.78 9 15 0.00027 0.0085 16.2 2.7 1 23 717 739 717 739 0.97 10 15 4.1e-05 0.0013 18.7 2.6 1 23 745 767 745 767 0.97 11 15 1.4e-06 4.5e-05 23.3 1.0 1 23 773 795 773 795 0.98 12 15 0.0095 0.3 11.3 0.4 1 23 801 823 801 823 0.97 13 15 0.00028 0.009 16.1 4.3 1 20 829 848 829 851 0.94 14 15 5.1e-08 1.6e-06 27.9 0.3 1 23 857 879 857 879 0.98 15 15 6.9e-05 0.0022 18.0 2.2 1 23 885 907 885 907 0.97
Sequence Information
- Coding Sequence
- ATGTCTCAAATGAAAATTATTCTGAACACCACAGATGGCAATACTGTCTCTGTTGATGTGCGTCCTGAAGAAACATATCGCATGCTTAGAGAGCGCATACATGTTGAATCAGGCATCGAACTTGAAATTTCTCAGATGTTCTTTGATGGCAAACAAGTTGTGGAGGATCAGAATGTCTACGAATCTTTTCTTGGAGTTCAATCAGAAGATGATGTTCAACAAAAGCCAAACATTGTGTGTGTTGTAGAAGGGTGTTCTACTTCTAAACTAACTGatccaaaaaaagaaatttttaaatttcctcTAGAAAGTGATAGGTATTCCACTTGGCTTCTGGCTTGTAATAGACATGATCTACTGGGGCGCATTCCAGTTTCATTAAATCTggagtgtggtgtgtgtgctgATCACTTCCCAGACTCATCCTTCATTAATGGAAGCTCTAGGAAACGTCTACGGAAAAATGCAGTTCCTGTCATAGAAGATCATCACAACAATTTCAGTATCTTAGCTCAGGAAATGATGTTGCCTGAAGTCAAATTGGAAAATGTTACTCTGAACAATTGCAATGAATCAAATGGAACAACAGGGTATGAGATTCAAGATACAGAGGACTCCTTACCTTTAGCATCATGTGCAGCAGATCTTGAAGAAGAGCATGTCTTGAGAAAAGATGAAACAACATCAGAAAACGCTTCCACTCAAGATGAGGTTGATGAAGAAGATTTACAAGAGGATGAACTAGAGGAGCTTGAAGAAGAGGATGATGAGGACGAAGAAGCTGATGTTGAAGAGGATGGCACTGACATATTAAGTAAGACAATTTCACTTGAAGAGCACCCTGGTCTCATGTGCAGACTTTGTGCTCAGCCTGTGGATACTGCTCATTTCATTTTCTCAGAGGAAGGTAAAGGAGAGAAGCTTCCTGATAAAATCAATTCTACCCTGCCAATTAGTATACATTGTAATGATCTTCTACCCAAGCAAATATGTGCTGAATGTCTTTCAACCTTAAACATTTGCTATGCTTTTGCCATGGCATCAGTTAAAGCAGAAGAAATTTTATTAAAAATGGTACCGAGGTTCAGGTGCAAGGAAGATTTTCCAAGTGGGGTAGCAAATATATTAGATTCAAAAAGTAGTTCTGAAAACTTACAAGTTAATGTGGACAAGGAAGAAGGTCATGAATCTCAGTGCTACAACTGCCCTCTTTGCTGTGGAGGCAACATGGAATCTCGAGATGATGTCAACATTGAAGAAATTGAAGGGAGGCAAGCCAAAGACGATGAGGACATAGTGCAAGATTTCCTGGCTGACAGTGTGCTGTGGGAAGAAGATGAAGACTTCCTGGTGTCTGATCAAAATTACACAGAAGAGGCTGAAGACTTGAATGAAAGTGAGATCAGTGATGAATGCTATTCCTGTTTTCTCTGTGGTGCAAACTTTATTTGTCAAGCTCATTTATTTCAACATAGTGAATGCCATCAAGTAAGTGAGTGCTTCCCTTGTGGTCATTGTGGCCTTGTCTTTAACTCAAAAGATACCCTTACTATTCATTTAGATTTGATTTTAAACTCAAATAGTGAAGAACAATACAGATGTGGTGATTGTGGAAAATTGTTCGCCTCAGAGCCAAGAGCagaatttcatcatgaaattgcccataataTCAATGGGTTTTCATCTCTTTCTTGTTCGGAATGTGGACAAATCTTTAGGCAAGAAACTAATTTATGGGATCACATTCAAATTGTCCACAAAGGTCAGAAACCATTTTCGTGTCCCAAATGTGAAAAAGTTTTCCAAATAAGATCCCAAGTTGTGACTCACATGCGTGTCCATGATGTTAAAGGCTCATTTCAATGTGAAACTTGTTCTGAGACTTTTCCTGACAGATCTAGTTTGTCTATTCATGAAGCTGCTCATGCAGATCTAAAGATGTTCCAGTGTGAACAATGTGGCCGTTGCTTTACAAGAAAGTTCCTTCTTACAGCCCATATGAGGACTCATGTTGACAAAAAGCCTCGGGTGTACACATGTCGAGTATGTGGGGAGGATGGATTTGATTCTTTACCGAAGCTCTTGGTTCACCGCCGCAACAACCACCAAGATGTCATGTTGCCACTTGGATCAAAGAAAGACAAAGTTCACAAATGTGAACAGTGTAATAAAGCATTCACTGGTCGTGTTGCTCTCAAGCACCATGCAATGAGCCATGCAGGTGAACTGCCTCATGTTTGTGAATTTTGCAACAAAGGCTTTACTCAAAAGCGATCGCTTATTCTTCATCGCCGCATTCACACTGGGGAAAAACCATATGAATGTGGGGAGTGTGGCAAACGCTTTGTTCAAAGTGCTCACCTTTATTCTCATCTCCGTCTCCATACTGGGGAAAAACCTTACCCATGCTCTGAGTGTGGTGCCACTTTCCGATTGAAAGATGTCAGAGACTCTCATCAAAGAAAACATACGGGAGAAAGACCATTCAAATGCAAAGATTGTGACAAATCTTTCCGGACTTCACATTCTTACTATCAACATACATGGATACATACTGGTCGTAAACCATATCCATGCAATTATTGTGGGAAAGCTTTCAGGCGTTCTAATGGTCTTAAAGTTCATATCCGAATTCATACTGGTGAGAAGCCACATAAATGTGATATTTGCGGAAGGGGCTTTGCACAAAAGCAGGATATGAAGAAACATAAAAATCTTCATACTTTAGGAAGGCTGTAG
- Protein Sequence
- MSQMKIILNTTDGNTVSVDVRPEETYRMLRERIHVESGIELEISQMFFDGKQVVEDQNVYESFLGVQSEDDVQQKPNIVCVVEGCSTSKLTDPKKEIFKFPLESDRYSTWLLACNRHDLLGRIPVSLNLECGVCADHFPDSSFINGSSRKRLRKNAVPVIEDHHNNFSILAQEMMLPEVKLENVTLNNCNESNGTTGYEIQDTEDSLPLASCAADLEEEHVLRKDETTSENASTQDEVDEEDLQEDELEELEEEDDEDEEADVEEDGTDILSKTISLEEHPGLMCRLCAQPVDTAHFIFSEEGKGEKLPDKINSTLPISIHCNDLLPKQICAECLSTLNICYAFAMASVKAEEILLKMVPRFRCKEDFPSGVANILDSKSSSENLQVNVDKEEGHESQCYNCPLCCGGNMESRDDVNIEEIEGRQAKDDEDIVQDFLADSVLWEEDEDFLVSDQNYTEEAEDLNESEISDECYSCFLCGANFICQAHLFQHSECHQVSECFPCGHCGLVFNSKDTLTIHLDLILNSNSEEQYRCGDCGKLFASEPRAEFHHEIAHNINGFSSLSCSECGQIFRQETNLWDHIQIVHKGQKPFSCPKCEKVFQIRSQVVTHMRVHDVKGSFQCETCSETFPDRSSLSIHEAAHADLKMFQCEQCGRCFTRKFLLTAHMRTHVDKKPRVYTCRVCGEDGFDSLPKLLVHRRNNHQDVMLPLGSKKDKVHKCEQCNKAFTGRVALKHHAMSHAGELPHVCEFCNKGFTQKRSLILHRRIHTGEKPYECGECGKRFVQSAHLYSHLRLHTGEKPYPCSECGATFRLKDVRDSHQRKHTGERPFKCKDCDKSFRTSHSYYQHTWIHTGRKPYPCNYCGKAFRRSNGLKVHIRIHTGEKPHKCDICGRGFAQKQDMKKHKNLHTLGRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435022;
- 90% Identity
- iTF_01435022;
- 80% Identity
- iTF_01435022;