Tpal000741.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:3607014-3610023[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 5e-05 0.0016 18.5 4.3 3 23 231 251 230 251 0.99
2 11 5.6e-07 1.8e-05 24.6 0.9 1 23 257 279 257 279 0.99
3 11 1.3e-06 4.3e-05 23.4 0.9 1 23 285 307 285 307 0.98
4 11 4e-05 0.0013 18.8 4.4 1 23 313 335 313 335 0.99
5 11 1.2e-05 0.00038 20.4 1.3 1 23 341 364 341 364 0.98
6 11 0.00042 0.014 15.5 1.6 1 21 370 390 370 391 0.95
7 11 0.00039 0.012 15.7 0.5 2 23 414 436 413 436 0.92
8 11 0.071 2.3 8.5 1.2 1 23 442 464 442 464 0.99
9 11 4.6e-08 1.5e-06 28.0 1.8 1 23 470 492 470 492 0.99
10 11 1.3e-06 4.3e-05 23.4 1.2 1 23 498 520 498 520 0.98
11 11 5.1e-07 1.6e-05 24.7 0.6 1 23 526 548 526 548 0.98

Sequence Information

Coding Sequence
ATGAAGTCGCCAACCCCAATGCCAGTTTcgccctcgtcctcctccgctGCAGTCAATATGCAGGCCATGGGCACCCGGAGGTCCTCTACACAGAGCATTAACGTTGTCATCGAGAAGCTGAAGAGGGAGCCGAATAATGAAATCCTCTCTGACCCTGATAATCCTGACAGTGACAGCGACTGTGACGTTGCTCCTCCTGTGTCACCCTTATCTAGTCCCACAAACGTCAGCAAGGATATTTTGACACAGGATGAAAAATCCACTGAATTTTTGCGTCTCTGTGCTCTAGCAGAGAGTCTAGTTTCACAATGTGGGTCCAGGCAGTTCCTTCAACGGTGCAAGATTATGGAAGATATAATAAGTAATTGGCAGAAGAATGTAGAAGTTGTAGTTGTCCCTCACTCTAAAGATGGAGAATGTGTTTCTACTGACATCAACAAAGATGTTCTCTCTATTTGCCTTGATGGTCCTCTTGTCCAGGAAGGTTCCAAACAAGATGCCAATAATGACTCTGATAATCAAAAGAACTCCATTGATTTAACAACAAGTGATGATGATTTGTATTTGCCATCTCATGAGGATGATTCTTCAAATTCTGAGAGTTCTTCACTTGACCCTGATGATTTCTGGGATGAAAATGACAAACAGGAACCGTCAAAAACAGAAACTAACAATGACAAGTCGGTTTTATGCCACATCTGCAGCAAGATGTTTGTTAACCGACAAAGACTGAAAAGGCACCTAAGAACTCATACAGGAGAGAAGTCTTATGAGTGCCAAGTTTGCAATAGGAAATATAGGCAAAGTGGTTCTCTTAGTGCTCATATGAGAACCCATACGGGAGACAGGCCCTATGAATGCACGATATGTGACAAAAGGTTTACTAGAGGCACTGATCTACGTGCTCATCTTCGGTTCCATTCAGGTGAAAAGCCTTATGAATGCACTATTTGCTTGCAGAAATTCAAACATAAAAATGATCTCAAAAAACATACAAGAATTCATACCGGAGAAAAACCTTATGAGTGCACGTTATGTGATATGAGTTTTATTCAAAAACATAATCTTGAAGGTCATGTTAGAAGTCGGCACACAGGAGAAAAACCCTTTGAATGTGCACAATGTGGTAAGAAGTACTGTCGAAAGGATCAGGTTAGAATTCATCTTAAAAATTGTGGGACAGGGGAAAAGAAAGATGGGAAAAAAAGGGTAAGAGGACCTGGAACTGGGCGCCCTCAGGTGTGCTACATTTGCAATTTGAAGTTCAGTAGCAACTACAGTCTCGAGAAACATTTTGCAGTATCCCACACTGGTGAAAAGCCATACCAGTGCTCAGTTTGCCTAAAGAAAATTGCTTGTCCTTCTGGTTTCCGAATCCATCTCAGAACCCATACTGGGGAGAGAAGTTTTGAATGCTCAGTTTGTGATAAAAAGTTCACCACCAACGTTAATCTCAAGACTCATCTTCGAACTCATACAGGAGAAAAGCCCTTCGAGTGCCCAGTTTGCAACAAGAGGTTTAACCAATCATGTGAACTAAAAGCTCATGCCAGAGTTCATACCggagagaagccttttgagtgcGAAGTTTGTGGTAAGAAGTTTGCTCAAGGAAGTACACTAAGAAAACATCTTCAAACTCATGAAGCGAAGTAG
Protein Sequence
MKSPTPMPVSPSSSSAAVNMQAMGTRRSSTQSINVVIEKLKREPNNEILSDPDNPDSDSDCDVAPPVSPLSSPTNVSKDILTQDEKSTEFLRLCALAESLVSQCGSRQFLQRCKIMEDIISNWQKNVEVVVVPHSKDGECVSTDINKDVLSICLDGPLVQEGSKQDANNDSDNQKNSIDLTTSDDDLYLPSHEDDSSNSESSSLDPDDFWDENDKQEPSKTETNNDKSVLCHICSKMFVNRQRLKRHLRTHTGEKSYECQVCNRKYRQSGSLSAHMRTHTGDRPYECTICDKRFTRGTDLRAHLRFHSGEKPYECTICLQKFKHKNDLKKHTRIHTGEKPYECTLCDMSFIQKHNLEGHVRSRHTGEKPFECAQCGKKYCRKDQVRIHLKNCGTGEKKDGKKRVRGPGTGRPQVCYICNLKFSSNYSLEKHFAVSHTGEKPYQCSVCLKKIACPSGFRIHLRTHTGERSFECSVCDKKFTTNVNLKTHLRTHTGEKPFECPVCNKRFNQSCELKAHARVHTGEKPFECEVCGKKFAQGSTLRKHLQTHEAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-