Tpal000887.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:9486002-9489510[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.13 4.2 7.7 0.5 2 19 371 388 370 393 0.94
2 13 0.00047 0.015 15.4 2.3 1 23 412 434 412 434 0.98
3 13 0.0031 0.099 12.8 0.3 1 23 439 462 439 462 0.93
4 13 0.00014 0.0046 17.0 1.6 2 23 479 500 478 500 0.96
5 13 3.1e-05 0.00099 19.1 0.5 3 23 508 528 507 528 0.99
6 13 9.9e-07 3.1e-05 23.8 0.4 1 23 534 556 534 556 0.98
7 13 0.00017 0.0054 16.8 3.0 1 23 562 584 562 584 0.97
8 13 3.1e-05 0.00097 19.1 1.8 1 23 590 612 590 612 0.99
9 13 0.00088 0.028 14.6 0.6 1 23 624 646 624 646 0.98
10 13 0.00012 0.0039 17.2 0.1 1 23 653 675 653 675 0.97
11 13 2.6e-06 8.3e-05 22.5 0.7 1 23 681 704 681 704 0.96
12 13 2.4e-05 0.00078 19.4 2.1 1 23 710 732 710 732 0.97
13 13 4.7e-05 0.0015 18.5 0.5 3 23 740 760 739 760 0.99

Sequence Information

Coding Sequence
ATGCCACATTCACGAATATTTTGCATCGCGAAATCCTGTTATAATTATCAACCGTCACCCTGCTCACCAGCATTCTTCAACCTACCTAGTGACTCAGAGAGTCGTTTAAAATGGATTGAGAATGCTGGGCGCCTggatttgaaagataaaaacaGCTCCATTCTGTCAGGAAAATATTATATTTGTGCAGATCACTTTGAGCCGCATTGTTTTGACGATCCAGTGAAGAAAGTGGCTCTAAAGAGAGGAGTCAACATAGTTCCTACCATTTTCAAAAATAACCTCGTATCACTAGTCAATATGGATGGCGATAAAACCTTTCGAGACAGTCAAAATACTTTGGCTGGAACTGTGCTTGCTGAAGTTGAATCAGCTCAAGAAATTCTTAATTCTGCTGTTGTTACCGACGATGTATTGGACACAGCAGAATGGACCAACATAGTGGCCGTCAGTTTAGGTGACGATGGAAATCTCATGTGTGACACATTAAATTCTCCCTCTCAGACTTTGTCGGAAAACACAGTGTGTTTTGCTACAGAAGAGACCCCTGAATCAAATGAGATGGTCATGGAATGCCTGATGCTTTGTCGTCTTTGTGCTGCTCTTGTCCAGCTCAGTATGCTGGTTCCAGTCTTTGGCGATGATTCTGACATCAGTTTGAGAAATATGCTTAATCGGATAATTCCTGGCCAAGTGCTAATGGATGATGGCCTACCTCAGCGTGTTTGTACCAGTTGTGTTGAGCGAGTACAGAGCTGCTCTCAAATTATTGATTCATTCAAAGCAGCTGACACTCGTCTACGTCAAATGGTGGAGTTGTGTAATTTTGGTGAAACAACTGTTGTGAGGGATGGAACAATTACTCTGCAAGGCGAGAGTGGTCTCCCAATCATTTTACAAACAGTGACTGAGAATCCACAAGAAGAACTGGAGGATATAGGCAACAGTATCAGTACAAATTACTCTGGTGAGGGAGCATCTTTCAGATTAGGTATGAAGGAAGTTCCAATTTCCAACTTGGATTCTACTGAGCATATTTCTATTGATGCAGTGAACTTCAATATTCATGTTGAAGAGGAAAGTTTAGGCTTTAATGAAACTCATCAAATTAAATGTGGTGTATGCCAGCAGGTGTTTAATGAACAAGCTGAACTTGTTTCTCATTGTGTTAACTACCATTCTATAAAGCTTGAGGATGGTTCTGTCTTTGTACCAGATGATGTTACTAGTGCTTATCAGTGTACAATTTGTGACGACGTATTTACTAGTGGAAGCTGCCTGAAAAATCACATGTTCTCTCATGTTCTAGGAACTTTTGAATGTGGTCTATGCAAATTAACTTTTAATGATAAAAATGATCTTGATACGCATTTAAGTGATGAGCATAGTGACACCCTAGTTTTTAAGGAGAACTGTGATGATTCAAAAAGCTGCAAATGTGAGCTATGTGGCAAAGAATTTAGGAATGTTATTGCTTTAAGGAAGCATAAAGCCACTCACACAGGAGAAAAAACAGTTCTTTGTTCACTATGCGGAAAAACTCTTGCAAATCTCAATAGTTTACGCGTGCATATGCGCACCCACTCTGATGACAGACCTTTTACTTGCTCAGAATGTGGGAAATCTTTTAAGGGACCCTCTGAACTCCGTTCTCATTCTATTACTCATTCTAGAGAAAAAGTTCACAACTGTCCAGAGTGTGGTAGAAAATTCCATTCAAAAGGATTAGTGAGACAACATATGTTAAGTCATACAAATGACAAACCCTATAAGTGTGATATGTGTACTGCTTCCTTCAATCGACTAGGTAATTTAAATCAACACAAGAAGAAGCATATTGATAAACCAGCTGCACCTGTTGTAACACCTTATGAATGTGGTGCTTGTGGGAAAAGATTTCAATCAAAATTGACCTTGAAGTACCACATTGCAAAGCATACAGGTGATAAATATCCATTTGACTGTGAAATATGTGGGAAAAAGTTTATTGCTCTAGATCCCTACAGAGTTCATATGAGGGTCCACACTGGAGAGCGCCCATTTGAATGTGAAATGTGCAAAAAATCTTTCCGTAGCTCAGGGACACTGAAGCAGCATATTGCATCTCTTCATCGAGATGATTTTCCTTTTGCTTGTTCCTATTGTCAACGTAGTTTCAAGAGACTACAGTCCTTAATAGTTCACAAAAAAACACATACCGGAGAAAAACCATGGCTTTGTTCACAGTGTGGCCGAGCCTTTGCTCAGAAAGGCGACATGATCAAACACACTAAAACACATCGCACCCACGTTGAAGAAGAGGAGATAATTATGGAGGGAGATACTATGGATGATTTGGCTCTAGATaatgaaatttcaaaaatgaTATTTGGTTAG
Protein Sequence
MPHSRIFCIAKSCYNYQPSPCSPAFFNLPSDSESRLKWIENAGRLDLKDKNSSILSGKYYICADHFEPHCFDDPVKKVALKRGVNIVPTIFKNNLVSLVNMDGDKTFRDSQNTLAGTVLAEVESAQEILNSAVVTDDVLDTAEWTNIVAVSLGDDGNLMCDTLNSPSQTLSENTVCFATEETPESNEMVMECLMLCRLCAALVQLSMLVPVFGDDSDISLRNMLNRIIPGQVLMDDGLPQRVCTSCVERVQSCSQIIDSFKAADTRLRQMVELCNFGETTVVRDGTITLQGESGLPIILQTVTENPQEELEDIGNSISTNYSGEGASFRLGMKEVPISNLDSTEHISIDAVNFNIHVEEESLGFNETHQIKCGVCQQVFNEQAELVSHCVNYHSIKLEDGSVFVPDDVTSAYQCTICDDVFTSGSCLKNHMFSHVLGTFECGLCKLTFNDKNDLDTHLSDEHSDTLVFKENCDDSKSCKCELCGKEFRNVIALRKHKATHTGEKTVLCSLCGKTLANLNSLRVHMRTHSDDRPFTCSECGKSFKGPSELRSHSITHSREKVHNCPECGRKFHSKGLVRQHMLSHTNDKPYKCDMCTASFNRLGNLNQHKKKHIDKPAAPVVTPYECGACGKRFQSKLTLKYHIAKHTGDKYPFDCEICGKKFIALDPYRVHMRVHTGERPFECEMCKKSFRSSGTLKQHIASLHRDDFPFACSYCQRSFKRLQSLIVHKKTHTGEKPWLCSQCGRAFAQKGDMIKHTKTHRTHVEEEEIIMEGDTMDDLALDNEISKMIFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01435029;
90% Identity
iTF_01435029;
80% Identity
iTF_01435029;