Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:10625616-10630513[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.24 7.7 6.9 1.0 2 23 478 499 477 499 0.96

2 17 0.081 2.6 8.4 3.7 3 23 550 570 548 570 0.95

3 17 0.0021 0.068 13.3 1.9 1 20 579 598 579 601 0.93

4 17 9.6e-06 0.00031 20.7 1.3 1 23 610 632 610 632 0.98

5 17 0.00031 0.0099 16.0 0.2 1 23 641 663 641 663 0.98

6 17 2.6e-05 0.00083 19.4 5.2 1 23 672 694 672 694 0.98

7 17 5.9e-06 0.00019 21.4 5.6 1 23 700 722 700 722 0.98

8 17 5.7e-05 0.0018 18.3 0.6 1 23 731 753 731 753 0.98

9 17 0.09 2.9 8.2 6.6 1 23 759 781 759 781 0.94

10 17 0.00011 0.0037 17.3 0.7 1 23 787 809 787 809 0.96

11 17 1.6e-05 0.0005 20.0 1.4 2 23 851 873 850 873 0.94

12 17 3.7e-05 0.0012 18.9 0.1 3 23 886 907 884 907 0.96

13 17 0.00086 0.027 14.6 0.8 1 23 913 935 913 935 0.98

14 17 1.8e-06 5.6e-05 23.0 2.3 1 23 941 963 941 963 0.98

15 17 0.00016 0.005 16.9 5.5 1 23 969 991 969 991 0.98

16 17 3.5e-05 0.0011 18.9 1.6 1 23 997 1019 997 1019 0.98

17 17 0.027 0.87 9.9 3.6 5 23 1028 1046 1027 1047 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.24	7.7	6.9	1.0	2	23	478	499	477	499	0.96
2	17	0.081	2.6	8.4	3.7	3	23	550	570	548	570	0.95
3	17	0.0021	0.068	13.3	1.9	1	20	579	598	579	601	0.93
4	17	9.6e-06	0.00031	20.7	1.3	1	23	610	632	610	632	0.98
5	17	0.00031	0.0099	16.0	0.2	1	23	641	663	641	663	0.98
6	17	2.6e-05	0.00083	19.4	5.2	1	23	672	694	672	694	0.98
7	17	5.9e-06	0.00019	21.4	5.6	1	23	700	722	700	722	0.98
8	17	5.7e-05	0.0018	18.3	0.6	1	23	731	753	731	753	0.98
9	17	0.09	2.9	8.2	6.6	1	23	759	781	759	781	0.94
10	17	0.00011	0.0037	17.3	0.7	1	23	787	809	787	809	0.96
11	17	1.6e-05	0.0005	20.0	1.4	2	23	851	873	850	873	0.94
12	17	3.7e-05	0.0012	18.9	0.1	3	23	886	907	884	907	0.96
13	17	0.00086	0.027	14.6	0.8	1	23	913	935	913	935	0.98
14	17	1.8e-06	5.6e-05	23.0	2.3	1	23	941	963	941	963	0.98
15	17	0.00016	0.005	16.9	5.5	1	23	969	991	969	991	0.98
16	17	3.5e-05	0.0011	18.9	1.6	1	23	997	1019	997	1019	0.98
17	17	0.027	0.87	9.9	3.6	5	23	1028	1046	1027	1047	0.94

Sequence Information

Coding Sequence: ATGGAACCTGTGGATTCTAGAGTCCCTACGACTTATCGGTATGAAGAGGAACGAAATAGCTGGACTGATGACTACATTAACTTGGGACAGCTGTGCAGGATCTGTGGAGCCCCCAGTGATTTTCTGATGCCTATATTTGATGGTGAAAGCCACGATCGTCTTGACCTCAAGATTCACATGCATCTTCCCATACAGGTTGATAGGAATGATATTTTGCCGGTGCAATCCTGTTTCAACTGTGTCACAACAATTCAGTCATGGCACAACCTATTTCTGGCATGCCAAGAGGCAGATCTCAAATTTCAGACCATGCTTGGCACTAAAAATCAGGTACCAAACAGGCACAGCTCAGTCCTCATCTCACCAAACTCTGCTCACGCACATTCCTTACCCAGCCATCATGCTACTTTGACTTTCCCAAAAATTTCACAAAACCCACCGTACTTGGAGGTCACTACTACTATACCTCATGCTCATTTAGATCAATCAACTTCAACTTCGTGCATTCAGGAACTGCAGCCATCAACAGAACTGTTGAATGGGATGCGTCACTACTCTTTGCCTCAAGAGGAGACATTTGAACAAACATTTAATAGTTCGATCAGTTCAGGCTTAGCATCTAGTGTTCCAACAGAATTCACCAATAATGTGATTTCTCACATTGTACATGAGAAATTTTCATCTTCCCCCATACATACACACAGTGAACAGCATGTTGCGCATGTGAGCACACAGACAGAGAATGATGGTGATGACAAGTCCTCCCAGGATGAGACAAAGTTCAACAGCAAGAAGAGTGTCATTGGTAAAAAGATATTCAGACAAGGTTCTACTCTCAAAGGAAAGAAAGATGCATCATTTGACATGGATTCAGGAAGGCCTCCGCCTTTACCAGCTGAGAGAGAAAACTCCATCTCAGAAGCTCCACACCGAGTATCTGCCATTCAATCAGTTGGTAGCAGAAATGACACCACATACCAAGAAACAAATTGCACCAGGTTAAAAAGTGTGTTAGTAAGGAATGAATCCGTACGGCCATCTGTATTATCATCAGACAACACAGATAGGCCTCATTTAGTAAATTCTAAAATAGAAATTGTAGAATCTGGAGTTATTAGAGAACATCGACATTCAGAAGTATTAAAAGAACCTAGTAAAAGCACTATGGTATCAGTCCTTCGTCCAACATGTCTCAGAAGAGCTCCAACTAAAATTGGTGTTATTGAAACTACCTTCAAAGAGCCTGAGATTCAAGTAGGTGTCAAGGATATTAATCAATGTGCAGCAACATCATATCCAATGGAAGAAAGGGACTACTATGATTCAGCACCTTGTCATGGAGATGATTTTGAAGATGTGCATCCTGAGTTTCTGGATCCACCATCTTTGAGCACTCTGgaagaacaaaacaaaattggaGATCCATCTCAAGTTTGTTTTCACTGCAAGAAGTTCATTGCCAATCCAATTTTGCTGCTTTCTCATGAAAAATCTCATATGTCTGATTCAAATCCGCCGACAACATTCATTTGCAAATTTTGTTCAATACCTGAAGTTTCAATCAGCAGCCTACATTCGCATTACGCTTCACATGAAACTGAAGTTGAGAGACTGCAAAGAAATCAGAGTAATAGAAAAGCCCATCTTTGTAAGCAATGTGGGATTATGTGCACTACAGAAGAACGTTTATCTATGCATCAACGATTGCATGCAGAAGGAGTAGAGCCTTTCAGGCATGAATGTAAAACTTGTGGACAGCAGTTCAATACTAGAAGCAAGTTGAGTGTGCACCTTTGGAGTCATGCATTAAAGCCATCATTAAAAACTTTTAAGTGTCACATTTGTGGCAAAGGCTTTGTGACAAAATCTGCAGTTATGGAGCACCGCTTAAAACATACAGACGAGGAGAGATCTCGAGCTTTTAAATGTGTGATTTGTGGTATGGCATTTGGAAATAATACTCTCTTAGGGAAGCATCGGTCAACTCATTCTGAGGAAGAACTGGCAAGGCCTTTCCAATGCACCTTTTGTGGTAAATCATTTGCCAGAAACCACACCCTCCAAATTCATCACCTGTCTCATACTAATGTGAAAAGTCATGTGTGCAATCAATGTGGAAAATGTTTCAAAATGAGAAACTCATTGATTCAGCATATGAGAACTCATCAAGATCCAAGTTGTCTGCCAACATACCCTTGTCAATTATGTggtaaaatttttaaaatcaaGTCAAGACTTCGAGATCATCTCAGACTTCACAATGGCGACAAACCTTACAAGTGCAGTACTTGTGGAAAATGTTTCCACAAGATAACTGCTTTGCACACTCATGAAGTGAGTCATACTGAAAGAAGACCATATATGTGTGATATTTGCGGCAAGGCATTTAAGTGGAGTAAGAATCTCCGCCAGCATACTTTTGTGCACATTAGTACAGGCAAATCTTCAGAGAAAACTCCTTGTTCTTCAGAGAAAACTCCTTGCTCTTCAGAGAAAACTCCTTGTTCTTCAGAGAATACAGTTAAGTTGAAGCCAAGCCAGCAACCTTGCCAATGTGAAATATGTGGAAAACAGCTGTCCACTAAAAGTAGTTTGCGACAGCACATGGCTAACATTCACAGTGATGGAGAAGGCAAACAAATTAAGTCAACAATTTGTTCCATTTGCGGGAAAGTGCTGTCTAATGCAGGGGGTCTTTTAAGACACATGAAAATAACTCATGGAGGTGTGAAGGCTTTCAAATGTGACATTTGCGACAAAGAATATTCCACAAAGGTTGCTCGTGATGACCATAGGCGGTCACACACAGGAGAGCGTCCTTATACATGCAGCATTTGCAACAAATCATTTACATCCCTTTCGAATCTTCATATTCATCGATTGATTCATAGTGAAGACCGCCCCCACAAATGTACCTATTGTGATAAGCAGTTTAAACGACGCGCACATCTTGTACCACATCTTCGCACTCACACTGGAGAAAAACCATATGTATGCAACATTTGTTCTCGGGGCTTTGCACAAAGCAATGATCTGCACAAACATCGTCTAACACATTCAAATGACAAGGCATATGCATGTCACTGTGGTGTGGCCTTCCGGGTTAAACGGGATCTAACTCGGCATCAAGCTAAGCATCATCCAGCCGGTTCATTGCAATCTGCTCCATCACAAAATGCACTACTTTCTTCTGGCGCCATCTCGGAAACACATGCACCCAGAGAACAACTTATTTTACTTACAGGGCAGCATTCTTCAGTGGCCTCAGTGTCAACTGTGCCAGAGTATAATGTGCCTGTTGAAACATATGGCAACTTTGTTGCTACTCCCTCAGTGGTTGTACTGAACACTGGAGTACTAGCATCTAGAAATTAA
Protein Sequence: MEPVDSRVPTTYRYEEERNSWTDDYINLGQLCRICGAPSDFLMPIFDGESHDRLDLKIHMHLPIQVDRNDILPVQSCFNCVTTIQSWHNLFLACQEADLKFQTMLGTKNQVPNRHSSVLISPNSAHAHSLPSHHATLTFPKISQNPPYLEVTTTIPHAHLDQSTSTSCIQELQPSTELLNGMRHYSLPQEETFEQTFNSSISSGLASSVPTEFTNNVISHIVHEKFSSSPIHTHSEQHVAHVSTQTENDGDDKSSQDETKFNSKKSVIGKKIFRQGSTLKGKKDASFDMDSGRPPPLPAERENSISEAPHRVSAIQSVGSRNDTTYQETNCTRLKSVLVRNESVRPSVLSSDNTDRPHLVNSKIEIVESGVIREHRHSEVLKEPSKSTMVSVLRPTCLRRAPTKIGVIETTFKEPEIQVGVKDINQCAATSYPMEERDYYDSAPCHGDDFEDVHPEFLDPPSLSTLEEQNKIGDPSQVCFHCKKFIANPILLLSHEKSHMSDSNPPTTFICKFCSIPEVSISSLHSHYASHETEVERLQRNQSNRKAHLCKQCGIMCTTEERLSMHQRLHAEGVEPFRHECKTCGQQFNTRSKLSVHLWSHALKPSLKTFKCHICGKGFVTKSAVMEHRLKHTDEERSRAFKCVICGMAFGNNTLLGKHRSTHSEEELARPFQCTFCGKSFARNHTLQIHHLSHTNVKSHVCNQCGKCFKMRNSLIQHMRTHQDPSCLPTYPCQLCGKIFKIKSRLRDHLRLHNGDKPYKCSTCGKCFHKITALHTHEVSHTERRPYMCDICGKAFKWSKNLRQHTFVHISTGKSSEKTPCSSEKTPCSSEKTPCSSENTVKLKPSQQPCQCEICGKQLSTKSSLRQHMANIHSDGEGKQIKSTICSICGKVLSNAGGLLRHMKITHGGVKAFKCDICDKEYSTKVARDDHRRSHTGERPYTCSICNKSFTSLSNLHIHRLIHSEDRPHKCTYCDKQFKRRAHLVPHLRTHTGEKPYVCNICSRGFAQSNDLHKHRLTHSNDKAYACHCGVAFRVKRDLTRHQAKHHPAGSLQSAPSQNALLSSGAISETHAPREQLILLTGQHSSVASVSTVPEYNVPVETYGNFVATPSVVVLNTGVLASRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -