Tpal008477.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- Bcl11b
- Assembly
- GCA_012932325.1
- Location
- NW:2754529-2757893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00032 0.01 15.9 0.4 1 23 210 232 210 232 0.97 2 16 0.019 0.59 10.4 1.6 1 23 238 261 238 261 0.89 3 16 3.2e-06 0.0001 22.2 1.3 1 23 269 291 269 291 0.98 4 16 0.0098 0.31 11.2 0.1 1 23 297 319 297 319 0.98 5 16 4e-06 0.00013 21.9 3.2 1 22 325 346 325 347 0.90 6 16 5.8e-05 0.0019 18.3 2.3 1 23 354 376 354 376 0.98 7 16 1.1e-05 0.00035 20.5 0.4 1 23 382 404 382 404 0.96 8 16 0.00019 0.0059 16.7 1.3 1 23 410 433 410 433 0.95 9 16 0.0011 0.035 14.2 0.6 1 23 439 461 439 461 0.98 10 16 3.1e-07 9.9e-06 25.4 0.9 1 23 465 487 465 487 0.95 11 16 0.00012 0.0039 17.2 1.7 1 23 493 515 493 515 0.96 12 16 3.9e-07 1.2e-05 25.1 2.0 1 23 521 543 521 543 0.98 13 16 4.1e-05 0.0013 18.7 0.0 1 23 549 571 549 571 0.98 14 16 3.7e-05 0.0012 18.9 0.1 1 23 577 599 577 599 0.97 15 16 8.5 2.7e+02 2.0 0.2 13 23 638 648 638 648 0.93 16 16 0.0018 0.058 13.5 0.0 1 23 654 676 654 676 0.97
Sequence Information
- Coding Sequence
- ATGGTCGATTGTAACAGAGTACCATACTCAAACAACATGAATATGGTGTGTCGGCTATGTCTGTCAGAGGACGGCAATAAAGTGCCAATTTTTGATGATAACAACAAACATGCTGTGCCTTTACCGATTCAGATCATGTCATGTGCACAAATTCAGGTCTATGCCAATGATGGTCTGCCCTCTCAAGCCTGTGCTAACTGTATAGAAAAGGTAGAGCAGTGGTTCGAGTTCAAGGGAGTGTGCACCCGCTCTGATGAGAAATTACGTCAGTTAATTGTTAAGAAAGAGAGCTTGCCACAGTGGGAAGACGGAAGAATGAGCTCAAGCCCAAAGCCAGAAGACACAAGTCAAAATTCATCATTCTGTCAGTATGAAAATGGTCAGCCTCAAGAAGTCGAGGTACCAGAGGTGGAATGTGATGTTGGATTTGCCTCTGACCGATGTGAGGATTCGGACTCAGAAAACAGTGTTACAAACAATAAGGAAACTACCAGCACTTCTAGGGATAGAAGGAAGCTGACAAAGGTGCAGGCTTCTCTGAAAGATGGGTCACTGCCTTCATCGGAGATGTATTTCTCTTCTTTAGATGAAGAAAGTGCTTCTGATGGGGATGCTGACTGGGATGAATTCAAATGTGAGGTGTGTGACAAGGTTCTTAAGTCAGATGCTGCTCTTAAAAAGCACAAACTAAATCATGCAAGAAAGCGTAAATTTCCTTGTACTATCTGTGGTAAAGCATTTCTGTTTAAAAACCATCAAGTGCGTCATGAACGTAATTTGCATGGGAAAGACCCAGATGATATTTTTCCTTGTACTGGATGTGAGAGAAAGTTTACCAGGGAATTTGAGCTGAAAGCACATTATCGCACCCACTCTGATAATGTGACatttgaatgtgaattttgtagCAAAGTTTTGGAAGATGAACCCAGTCTATCAGATCATATTAAGTTACATTTGAGTGACCGACCGCACATTTGTGAAACATGTGGAAAAACATTTGTCCGGAATAGTCACCTTAAAAAGCATATTTGGACTCACAGTAATGAAAAGAAACCTCATCGATGTTCTTATTGTGGTAAATCATTTTTGGACCTGAGCTCTCTCCAGGACCATCTTACAACTCACACAGGAGAAAAGCCATATCTGTGTACGCATTGTGGTAAATCTTTTTCTCAAGCACCAGCTTTAATCATGCATGAGAAAATTCATGCCACTGGACGCACACACTCTTGTAAATACTGTCCTAAAAGATTTACTTCTGCTGTTGAAGTGTCAGAGCACATGAAGGATAATCACTCAGGAGAGAAACCTTTTACATGTGGCACCTGTGGTAAGACTTTTGCTATGCAGATTGTTTATCTAAAGCATGTAAAGCGTCATGAGAGTTTGTTCCTGTGCAATGTCTGTGGCAAGACCTTCTCAAGCAAGCAAGGTTTGAAAAGGCATGTTCGCATTCACACTGGAGAAAAACCATATCTTTGTCAATATTGTAACACCTATTTCCGAACCTCTGCACATCTTGTAGAACATGTTCGTATTCACACAGGGGATCGCCCTTATGCTTGTGAAACATGTGGGAAAAGTTTTGCAAGGAGAACCCACCTTCAGCAGCATGTTCGCTCTCACACTGGTGAAAAACCATATGTTTGCAAATACTGTGGCAAACCCTGGGCTTCTTCCAGCAACTTGGCAGAACATGTTAGGATTCACACTGGCGAAAAGCCTTATATTTGTCAAATCTGTGGGCAAGCGTTTGGAAAAAGGTCTGCCTTACAAGAACATCTGAAGGGACATTCCTCATCAGAGGAGATGGGAGCCAATACCCCTGGCCCTGCATCTTCTCCTGGGAGTGTATCTCTCCCATTGTCTAGTTCAGGCCAGCTGTCAATGGCTGATGAATCATGGGCTTCCAGTAATTTAATGGATCATGTTAGGAGTCACTCTGGCGATAAACCTTACATATGTCAAATTTGCGGACAAGCATTTGAAGAGGAATCTGTCATGCAAGATCATATGAAAGGACACTCTGAGAATGCTCATTCCCCTTGTCCCACCTCACCATCAGTAGGCATACCTCTATCTCTTTCAAGCTCAGGCCAAATGTCATTGTCAGTGCCCAATGTTCTTGCTTCTTGA
- Protein Sequence
- MVDCNRVPYSNNMNMVCRLCLSEDGNKVPIFDDNNKHAVPLPIQIMSCAQIQVYANDGLPSQACANCIEKVEQWFEFKGVCTRSDEKLRQLIVKKESLPQWEDGRMSSSPKPEDTSQNSSFCQYENGQPQEVEVPEVECDVGFASDRCEDSDSENSVTNNKETTSTSRDRRKLTKVQASLKDGSLPSSEMYFSSLDEESASDGDADWDEFKCEVCDKVLKSDAALKKHKLNHARKRKFPCTICGKAFLFKNHQVRHERNLHGKDPDDIFPCTGCERKFTREFELKAHYRTHSDNVTFECEFCSKVLEDEPSLSDHIKLHLSDRPHICETCGKTFVRNSHLKKHIWTHSNEKKPHRCSYCGKSFLDLSSLQDHLTTHTGEKPYLCTHCGKSFSQAPALIMHEKIHATGRTHSCKYCPKRFTSAVEVSEHMKDNHSGEKPFTCGTCGKTFAMQIVYLKHVKRHESLFLCNVCGKTFSSKQGLKRHVRIHTGEKPYLCQYCNTYFRTSAHLVEHVRIHTGDRPYACETCGKSFARRTHLQQHVRSHTGEKPYVCKYCGKPWASSSNLAEHVRIHTGEKPYICQICGQAFGKRSALQEHLKGHSSSEEMGANTPGPASSPGSVSLPLSSSGQLSMADESWASSNLMDHVRSHSGDKPYICQICGQAFEEESVMQDHMKGHSENAHSPCPTSPSVGIPLSLSSSGQMSLSVPNVLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -