Basic Information

Insect
Thrips palmi
Gene Symbol
-
Assembly
GCA_012932325.1
Location
NW:273506-292482[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.1e-05 0.0029 17.6 0.9 2 23 42 63 41 63 0.97
2 17 1.9e-05 0.00061 19.8 0.8 1 23 68 90 68 90 0.97
3 17 1.6e-05 0.00051 20.0 5.5 1 23 98 120 98 120 0.98
4 17 2.9e-05 0.00091 19.2 2.3 1 20 124 143 124 146 0.94
5 17 8.5e-06 0.00027 20.9 0.6 1 23 152 174 152 174 0.98
6 17 2.6e-06 8.3e-05 22.5 3.6 1 23 180 202 180 202 0.98
7 17 0.0014 0.045 13.9 4.8 2 23 209 229 209 229 0.97
8 17 0.0093 0.3 11.3 0.4 1 23 237 259 237 259 0.98
9 17 4.1e-05 0.0013 18.7 2.4 1 23 265 287 265 287 0.99
10 17 3.1e-05 0.00099 19.1 0.3 3 23 299 319 297 319 0.97
11 17 1.5e-06 4.7e-05 23.3 1.0 1 23 326 348 326 348 0.98
12 17 1.9e-06 6.2e-05 22.9 0.5 1 23 354 376 354 376 0.98
13 17 0.0017 0.054 13.7 0.8 1 23 382 405 382 405 0.90
14 17 8.2e-05 0.0026 17.8 2.7 1 19 411 429 411 433 0.93
15 17 0.0018 0.059 13.5 2.9 1 23 439 462 439 462 0.96
16 17 0.00068 0.022 14.9 0.9 1 23 468 490 468 490 0.94
17 17 8.8e-06 0.00028 20.8 1.8 1 23 499 521 499 521 0.98

Sequence Information

Coding Sequence
ATGGAGGCCGCCACCCATGCGACGGATGAGATCGGCTCTGGATCTTCACACGCAACGGCTGTCAGTCAAGAAGAATTATCGAATGCATCTGACCGATGCAGGGCCAAGTCAAAAGGCAAGCTGGAGTGCAAAATTTGCAAGAACAAGTATGCGACTCGCATTACTCTCAGGATTCATATGCGTACCCATTCCGAGAAGCCGTTCGCGTGCACAGTCTGCAGCAAAACGTTCAGTCTAAGGGCTAACCTCAGATATCATCTCGAAACCCATTTCGATTTAGCCGAGACGCCCTTCGAGTGTACAGTATGCAACAAAAAGTTTAGAACATCAAGCTGTCTAAAATCACATACAAATTCTCACACGAAACCTTTTGAGTGCGCACTATGCAGTAAGAAGTTCAGCAGCAAAAGTCATCTCACCAAGCATCTTTGGGTCCATGGAGGGGTGAAGCTCTTCGAGTGCGCAGTTTGTCATAAAGCATTTCGGACCAGTGGTGATGTCACAATTCATCTTCGATCCcacacaggggagaagccttacgAGTGTACGGTTTGCAGCAAGAAGTTTAGTCAGAGCACACATCTGAATACTCATCTTAAAATCCACGCGGGCCAATCCAAACGGGAGTGCAATGTTTGCAAAAAGATGTTTCAACATCGATATCTTAAGAATCACCTTCGGACCCATACAGGAGAAAAGTCGCCCGAGTTCGAGTGCACTTTTTGCAGCAAGAAATTAGGTTCTGCACAGGCTCTGAAGATACATAATCGAatccacactggggagaagccctATGTGTGTTCAGTTTGCGACCAAACATTCAGACATTTAGACCCATTCAGGAGTCATCTTCGCAAGCATTCTGATGCCGAGGAGGTAGAGAAAACTTGGGACTGCACAGTTTGTGATAAGAAATTTAAAACAGGAGCAACCCTTAAAGTTCATCTCTTGACCCATCAAGAGCGAGAGAAGACTTTCGAGTGTGCAGTCTGCGGGAAAATGTTTCATAGCAGCGGAAACCTGAGAGCTCATTCCAGGACCCATTCAGAGGTCAAACCCTTCGAGTGTAACGTTTGCAATAAGGGCTTCAGAGATAAAAGAGATCTCACAATTCACCTCGTAACCCATACCAccgagaagcctttcgagtgctcAGTCTGCGCCAAAAAGTTTAGTAGGGCACCTTTGCTCAGATTGCATGTGGTGCAGTGCCATACGGAGAAGAGACCGTATGATTGTTCAGTCTGCAAGAAAACGTTTAAGAGATCAGAGCACCTAAAAATTCATTCCTGGACCCATACAGGAAAGAAGCCTTTTGAATGCAAACTTTGTAATAAGCTCTTCAAGACGAGCACGGAGGTCAAGTCTCATCATATTCGGATCCATTCAGAAGAGAGGCCCTTCTTGTGCACTGTTTGCAAGAGGAGGTTTAGTGCGTCCTTTGAACTCAGAAAACATCTTGGAGTCCATCTTCGAAAATATACAGGGCAGAAGTTTGAGTGCACCGTTTGCAACAAGAAATACAGTTCGGAGAAATATCTCAAGATTCATCTTCAAACTCATACTGGGGAAAAGCCTTTGTAA
Protein Sequence
MEAATHATDEIGSGSSHATAVSQEELSNASDRCRAKSKGKLECKICKNKYATRITLRIHMRTHSEKPFACTVCSKTFSLRANLRYHLETHFDLAETPFECTVCNKKFRTSSCLKSHTNSHTKPFECALCSKKFSSKSHLTKHLWVHGGVKLFECAVCHKAFRTSGDVTIHLRSHTGEKPYECTVCSKKFSQSTHLNTHLKIHAGQSKRECNVCKKMFQHRYLKNHLRTHTGEKSPEFECTFCSKKLGSAQALKIHNRIHTGEKPYVCSVCDQTFRHLDPFRSHLRKHSDAEEVEKTWDCTVCDKKFKTGATLKVHLLTHQEREKTFECAVCGKMFHSSGNLRAHSRTHSEVKPFECNVCNKGFRDKRDLTIHLVTHTTEKPFECSVCAKKFSRAPLLRLHVVQCHTEKRPYDCSVCKKTFKRSEHLKIHSWTHTGKKPFECKLCNKLFKTSTEVKSHHIRIHSEERPFLCTVCKRRFSASFELRKHLGVHLRKYTGQKFECTVCNKKYSSEKYLKIHLQTHTGEKPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-