Basic Information

Insect: Thrips palmi
Gene Symbol: ZEB2
Assembly: GCA_012932325.1
Location: NW:9779441-9784219[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00082 0.026 14.6 1.6 1 23 200 222 200 222 0.95

2 20 1.6e-06 5.2e-05 23.1 0.4 1 23 228 250 228 250 0.98

3 20 1.6e-06 5.1e-05 23.2 4.7 1 23 299 321 299 321 0.99

4 20 0.00012 0.0038 17.3 2.6 1 20 327 346 327 348 0.94

5 20 0.00088 0.028 14.5 3.3 2 23 366 387 365 387 0.97

6 20 0.0002 0.0062 16.6 0.5 1 19 393 411 393 414 0.95

7 20 0.04 1.3 9.3 0.9 1 23 423 445 423 445 0.95

8 20 0.00018 0.0059 16.7 1.3 1 23 451 473 451 473 0.98

9 20 0.00038 0.012 15.7 2.0 1 23 479 501 479 501 0.97

10 20 0.0031 0.098 12.8 0.1 1 23 507 529 507 529 0.92

11 20 0.31 10 6.5 0.1 1 23 535 557 535 557 0.85

12 20 0.024 0.76 10.0 2.3 1 23 563 585 563 585 0.98

13 20 1.2e-06 3.7e-05 23.6 0.9 3 23 593 613 592 613 0.98

14 20 0.0056 0.18 12.0 3.8 1 21 619 639 619 641 0.91

15 20 0.013 0.41 10.9 0.1 1 23 647 669 647 669 0.98

16 20 1e-08 3.3e-07 30.0 1.7 1 23 675 697 675 697 0.99

17 20 1e-06 3.2e-05 23.8 1.2 1 23 703 725 703 725 0.97

18 20 5.4e-06 0.00017 21.5 1.3 1 23 731 753 731 753 0.99

19 20 0.0014 0.044 13.9 2.0 1 23 759 782 759 782 0.92

20 20 0.00031 0.0098 16.0 5.2 1 23 788 811 788 811 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00082	0.026	14.6	1.6	1	23	200	222	200	222	0.95
2	20	1.6e-06	5.2e-05	23.1	0.4	1	23	228	250	228	250	0.98
3	20	1.6e-06	5.1e-05	23.2	4.7	1	23	299	321	299	321	0.99
4	20	0.00012	0.0038	17.3	2.6	1	20	327	346	327	348	0.94
5	20	0.00088	0.028	14.5	3.3	2	23	366	387	365	387	0.97
6	20	0.0002	0.0062	16.6	0.5	1	19	393	411	393	414	0.95
7	20	0.04	1.3	9.3	0.9	1	23	423	445	423	445	0.95
8	20	0.00018	0.0059	16.7	1.3	1	23	451	473	451	473	0.98
9	20	0.00038	0.012	15.7	2.0	1	23	479	501	479	501	0.97
10	20	0.0031	0.098	12.8	0.1	1	23	507	529	507	529	0.92
11	20	0.31	10	6.5	0.1	1	23	535	557	535	557	0.85
12	20	0.024	0.76	10.0	2.3	1	23	563	585	563	585	0.98
13	20	1.2e-06	3.7e-05	23.6	0.9	3	23	593	613	592	613	0.98
14	20	0.0056	0.18	12.0	3.8	1	21	619	639	619	641	0.91
15	20	0.013	0.41	10.9	0.1	1	23	647	669	647	669	0.98
16	20	1e-08	3.3e-07	30.0	1.7	1	23	675	697	675	697	0.99
17	20	1e-06	3.2e-05	23.8	1.2	1	23	703	725	703	725	0.97
18	20	5.4e-06	0.00017	21.5	1.3	1	23	731	753	731	753	0.99
19	20	0.0014	0.044	13.9	2.0	1	23	759	782	759	782	0.92
20	20	0.00031	0.0098	16.0	5.2	1	23	788	811	788	811	0.98

Sequence Information

Coding Sequence: ATGGCTCTTGTATCTTATGTTGATATTTTGGAGGTTGTTGGTGAGCTGAAAGATTTTAAAGCCAAACTTGTTGAAGGAGAAAAAATAGCTCAGAAAAATGGCATTTCCAAGCTGGCTGTTAATGAGAATACCAAAGGGGTATTCGACATTTCAGCTTCATGTCAATCGTTAACGGAGGACACTGCCTTTGATGTTTCAATCTCTGTTGTATGTGAGCCCCGTATTCTGGATTGCAAATGCTCTTGTCTGGAAGGAAAATCAGGAAAATGTCAACATGTTGTAGCAACGCTAATGCACATTCATCGGAGCAATATTTCTGCCGAGACTCTCAGTTATACAGATCCTGGAAGTATTGAATGTGTCAGTAGCAGTAAACCAACCAACCAGCAAAATGCTGAGGAAACTACCATTGAGATGGACACAGATCCACCGAGAGACGCCATTCAGACAAAGGAACAGACCACTGAAGAACTTGATAAAGAGGGACCCGGAAAGCACATTTCAAACTCTGATAGCAATGGTAACAGAGAACTAAGACTGGGACGAGGTCAAAGGAAAGTGGCACCGAATCCTAAATATGTATCTGAGACTAAAAGATTTTTATGCCAAGTGTGTTCAAAAGCATTTGGAAAGAAAGCACATTATGAAGAGCACTTGCGTAGTCACACTGGTGAGAAACCATTTGTGTGTGATGTTTGTGGTCAGCGTTATTCTCAGAAACGATCACTTGCAAAACACATGAATATCCATAAGGAGGACAAGGAAGAGAGCCAAACTAATCCTCCGTTAGGCACTCCTGGAGTTTTGAAACCACTTCCTCTTGTAGAGGATGGGCTTGTGGAAAGCCAAGCTCCAAAGAATCCTAGTGAAGATGTGCGAAAAAGTGACGGTGAATTCACTTGTGAAATCTGTGGCAAGCAATTCAAAAGACTTACTCATCTTACTCAGCACAAACGGACTCACATTGATGATAAACCTTTCAAATGTGGTGAATGTGGTAAAACTTTCAGCCGTGAACGTACATTTAAAGCACATAAACATAAACCTGACGGGAGTCCTGCCTCACCACCAGCGCCTAAGACACGTACCGTAACCACGTGTGAAGTATGTGGAAAAGAATTCACTAACCGTGTGCACCATGAAGAGCATATGAGAAGCCACACGGGTGAACGTCCATTCCAGTGTGTCGTGTGTGGGAAAGGCTTTGCTTCCAAACGTTCACTGCGCAATCACAGTCATGTGCGAAAAAGTGAAAGGGACCGTCCTCATATGTGCTCTCTGTGTCCTGCATCATTCACTACAGCATTCATGAGGAAAATTCATGAACGAGGGCATGCAGATGAAAGACCGTATGTCTGTTCTGAGTGTGGTAAAGCCTACCGTTCACAGCATGTGTACCAGGATCACCTTAATCAACATAAAGGCATCAAGGCTCACACATGCAAAGAGTGTGAAAAGTCTTTCACTTGGCGCACATCCTTATGGGTCCACATGAAAGAACATGCTAAAGAAAAGCCGTTTGAATGCATTCAGTGCGGAGAAAAGTTTTCTGTACAATCAGAATTGAAAGATCACTGGGTGGTGCATTTGAATGACAAGCCCTACCAGTGCTCTGAGTGTGGTTTGGGTTTCATGCTTGAAGCTGATCGTGACAAACATGTTGAAATTCACAAGCAGTCCCCTTCCTACTCCTGCACAAAATGTGATGAGAAGTTTCTCTGGGCTCATGATCTCAACAGACACCAGCAAACACATGCTGAAAAGAAGAGGAGCTTATGCCCAACATGTGGTCAAACCTTTTCCAGTAAAGGCCACTTGAAAGTGCACATGCTAATACACACTGGAGAAAAACCTTTCGAGTGTGCCACATGTCACAAAAGATTCTACACTCGTAGCCTCATGAGAAAGCATGAAGTATTTCATTCAGATGATCGCCCATTTGAATGTGTTTTGTGTGGGGACAAATTTCCTACCCAAGGTATCTTAAAAGCTCATGTTAGAACACACACTGGTGAAAAACCTTTTACATGTGAAAAGTGTGGTAAATCCTTTCCTCAGAGTTCTTACCTCAAGCGTCACATGCTTACACATACAGGAGAGAGACCTCACCCATGTCCAGAATGTGACAATTCATTCACCTCTCGTTATGACCTTAAAATTCATCTGCGAACTCATACAGGGGAAAAACCTTATTCTTGTGATGAATGTGATGAGAAATTTTACGAACGTGCGCATTTAACAGCTCACTTGCGAACTCATACAGGTGAGAAGCCTTATATTTGTGATTTGTGTGGCAAAGGATTTAATAGCAGTAACCATATTAAAAAACATTTTGTCCGTAATCATCCAAATGTAGCCCCATTCAAGTGTACTGACTGCCGAAAAAGATTTAAGATGTGTGAGGCATTACGTAAACATAGAAAAAGTGCTCATCTTTCAGGAACAGAAGAGGTAATTGATTTGAGTGAAACCAGTAATGAGGAGCATAGCCGACATAGTCAAAGTTCAGACAGTAGGGATCCACTCAAACGCCTCATTCGTGAAAGTGAAATTCTAGATGATTCATCATTGGATCCTGATGATCCACCAATCCTCTCTCCAGAGTATGAGATAGTGCATGTAAACCTGGTAGATTCCTCACATATCTTAAAACTCCCTGCTGGGTTTCGATGTGAAACCGTACAGGTTTATCAATCTGACCCTATGTGTAGTTTTGAAGACAATGGCGAATTTGAAGCAGTCACCTTGACTCCTCTACCAGAAGAAATAGAAGTATCTGACCCATCTTCCCCTATAGTGGTAGATGTTTAA
Protein Sequence: MALVSYVDILEVVGELKDFKAKLVEGEKIAQKNGISKLAVNENTKGVFDISASCQSLTEDTAFDVSISVVCEPRILDCKCSCLEGKSGKCQHVVATLMHIHRSNISAETLSYTDPGSIECVSSSKPTNQQNAEETTIEMDTDPPRDAIQTKEQTTEELDKEGPGKHISNSDSNGNRELRLGRGQRKVAPNPKYVSETKRFLCQVCSKAFGKKAHYEEHLRSHTGEKPFVCDVCGQRYSQKRSLAKHMNIHKEDKEESQTNPPLGTPGVLKPLPLVEDGLVESQAPKNPSEDVRKSDGEFTCEICGKQFKRLTHLTQHKRTHIDDKPFKCGECGKTFSRERTFKAHKHKPDGSPASPPAPKTRTVTTCEVCGKEFTNRVHHEEHMRSHTGERPFQCVVCGKGFASKRSLRNHSHVRKSERDRPHMCSLCPASFTTAFMRKIHERGHADERPYVCSECGKAYRSQHVYQDHLNQHKGIKAHTCKECEKSFTWRTSLWVHMKEHAKEKPFECIQCGEKFSVQSELKDHWVVHLNDKPYQCSECGLGFMLEADRDKHVEIHKQSPSYSCTKCDEKFLWAHDLNRHQQTHAEKKRSLCPTCGQTFSSKGHLKVHMLIHTGEKPFECATCHKRFYTRSLMRKHEVFHSDDRPFECVLCGDKFPTQGILKAHVRTHTGEKPFTCEKCGKSFPQSSYLKRHMLTHTGERPHPCPECDNSFTSRYDLKIHLRTHTGEKPYSCDECDEKFYERAHLTAHLRTHTGEKPYICDLCGKGFNSSNHIKKHFVRNHPNVAPFKCTDCRKRFKMCEALRKHRKSAHLSGTEEVIDLSETSNEEHSRHSQSSDSRDPLKRLIRESEILDDSSLDPDDPPILSPEYEIVHVNLVDSSHILKLPAGFRCETVQVYQSDPMCSFEDNGEFEAVTLTPLPEEIEVSDPSSPIVVDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -