Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:5600400-5610248[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.4e-05 0.00078 19.4 2.7 2 23 4 25 4 25 0.98

2 19 8.7e-06 0.00028 20.9 0.3 2 23 32 53 31 53 0.97

3 19 2.1e-06 6.7e-05 22.8 2.0 1 23 59 81 59 81 0.97

4 19 1.1e-05 0.00035 20.6 0.9 2 23 88 110 87 110 0.97

5 19 0.043 1.4 9.2 0.1 5 23 120 138 119 138 0.96

6 19 6.8e-05 0.0022 18.1 0.2 1 23 144 166 144 166 0.98

7 19 0.00023 0.0072 16.4 2.5 1 23 172 194 172 194 0.98

8 19 4.5e-05 0.0014 18.6 5.5 1 23 200 222 200 222 0.99

9 19 2.2e-05 0.0007 19.6 2.5 1 23 228 250 228 250 0.98

10 19 5.4e-06 0.00017 21.5 2.0 1 23 256 278 256 278 0.99

11 19 5.4e-06 0.00017 21.5 0.7 1 23 284 306 284 306 0.99

12 19 1.4e-05 0.00046 20.2 2.1 1 23 312 334 312 334 0.99

13 19 6.9e-05 0.0022 18.0 0.3 1 23 340 362 340 362 0.98

14 19 0.0018 0.059 13.5 0.6 1 23 368 391 368 391 0.97

15 19 0.00038 0.012 15.7 0.3 1 23 397 419 397 419 0.98

16 19 0.00039 0.012 15.7 0.6 1 23 425 447 425 447 0.98

17 19 3.9e-05 0.0012 18.8 0.7 1 23 453 475 453 475 0.95

18 19 5.1e-07 1.6e-05 24.7 3.9 1 23 481 503 481 503 0.99

19 19 0.00011 0.0034 17.4 0.4 1 23 509 531 509 531 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.4e-05	0.00078	19.4	2.7	2	23	4	25	4	25	0.98
2	19	8.7e-06	0.00028	20.9	0.3	2	23	32	53	31	53	0.97
3	19	2.1e-06	6.7e-05	22.8	2.0	1	23	59	81	59	81	0.97
4	19	1.1e-05	0.00035	20.6	0.9	2	23	88	110	87	110	0.97
5	19	0.043	1.4	9.2	0.1	5	23	120	138	119	138	0.96
6	19	6.8e-05	0.0022	18.1	0.2	1	23	144	166	144	166	0.98
7	19	0.00023	0.0072	16.4	2.5	1	23	172	194	172	194	0.98
8	19	4.5e-05	0.0014	18.6	5.5	1	23	200	222	200	222	0.99
9	19	2.2e-05	0.0007	19.6	2.5	1	23	228	250	228	250	0.98
10	19	5.4e-06	0.00017	21.5	2.0	1	23	256	278	256	278	0.99
11	19	5.4e-06	0.00017	21.5	0.7	1	23	284	306	284	306	0.99
12	19	1.4e-05	0.00046	20.2	2.1	1	23	312	334	312	334	0.99
13	19	6.9e-05	0.0022	18.0	0.3	1	23	340	362	340	362	0.98
14	19	0.0018	0.059	13.5	0.6	1	23	368	391	368	391	0.97
15	19	0.00038	0.012	15.7	0.3	1	23	397	419	397	419	0.98
16	19	0.00039	0.012	15.7	0.6	1	23	425	447	425	447	0.98
17	19	3.9e-05	0.0012	18.8	0.7	1	23	453	475	453	475	0.95
18	19	5.1e-07	1.6e-05	24.7	3.9	1	23	481	503	481	503	0.99
19	19	0.00011	0.0034	17.4	0.4	1	23	509	531	509	531	0.98

Sequence Information

Coding Sequence: ATGGCTAATCGGTGCACCATGTGCGACAAGAAGTTCACCTTGTTGTCATCGATGAGAAGGCACATTCGCTCTCACACCGAGGAGAAGCCTTTGGAATGCTCTgtctgcaacaagaagttcattCAAGGTGCAGACCTCAGAAGTCACATCCGCACCCACACCGGTGAGAGGCCTTACGAATGTTccgtttgcaacaagaagttttCTCAACCTGGGCACTTCCGTAAGCACCTCCTTGCACACACCGGCGTTGAGCCTTTGAAATGTTCGGTTTGCAACAGGAAGTTTGTTAAGGTTGAAAACCTTATAAGGCACATCCGCCGCACTCATACCGGGGAAAAAACTTTGGAACGTTCGGTCTGCAGCAAGAAATATAGAACGGCTGGGCAGTTAGGGAGCCACGTCCTTACCCACTCCGGCGAGAAGACTTTCGAATGTTCAGTCTGCAGCAAGAATTATGGTACGGCTGGACAGTTAAGAAGTCACCTCCGTGCCCATACAAGCGAGAGGCGTTTCGAATGTATGgtctgcaacaagaagttttTTCAAGGTGTACATCTTAAGGTGCACCTTCGCAGTCACACCGGAGAGAAGCCTTACGAATGTGCGGTCTGCGATAAGAAGTTTACTCACGTTGGACACCTAAATATGCACCATCGTACACACACCGGCGACAAGCGTTACGCATGTTCGATGTGTAGCAAGAAATTCCAGGATGGGGGACATCTTAAAAAGCATAttcgcacccacaccggcGAGAAATCTTTTGAATGTTCGATCTGCAATGGGAAATTTCGGGAAGCTGATCACCTTAAAAGGCAccttcgcacccacaccggTGAGAAACCTTACGAATGTTCGgtctgcaacaagaagtttagTGAGGGTGGTACTCTAAAATCCCACATCCGTACCCACACCGGTGAGAAAAGTTTCGAATGCTCGgtctgcaacaagaagtttagAGAGGATCGTACTCTAAAAACCCACATCCGTACCCACACCGGCGAGAAGCGTTTCGAATGCTCGGTTTGCAACATGAAGTTTGGTGAGTCTGGTACCTTGACAAGGCACGTTCGTATCCATACCGGCGAGCAGCCTTACGAATGTTCGATCTGCAACAAGAAGATGCGTCTAGCTGGACAACTAAAAAATCACCTTTTGCGTTACCACACCGACGAGAAGCCATTCGAATGTTCGGTCTGCAACCGGAAGTTCATTGAAGCTACAGTCCTTAGGAAGCACCTTCTTATCCACACCAGTGAAAAGCCTTTCGAATGCTCCTTCTGCAACAAGAAGTGGAGAAAACCCGACGACCTCAAAATTCACCTACGCATacacactggggagaagcctttcgaatGTATCctctgcaacaagaagttcagtgATGTCTCACCCCTTAAAAGACACATCCGCACCCACACCGGTGAGAGACCTTACAAATGTTtagtttgcaacaagaagtttacTCAAGCTGGGCACCTTAGTAAGCACCAACGGACACACACCagagagaagcctttcgaaTGTTCGGTCTGCAATCAGAAGTTCAATGAAGCCGAAAAGCTCGAAAGTCACGTCCGCTCGCACATGGAGGGGATACCTTCCGACAGTAGGGAAACAATCCAAGACGACACCCTGGTATCAACCGCACAGGTGTAG
Protein Sequence: MANRCTMCDKKFTLLSSMRRHIRSHTEEKPLECSVCNKKFIQGADLRSHIRTHTGERPYECSVCNKKFSQPGHFRKHLLAHTGVEPLKCSVCNRKFVKVENLIRHIRRTHTGEKTLERSVCSKKYRTAGQLGSHVLTHSGEKTFECSVCSKNYGTAGQLRSHLRAHTSERRFECMVCNKKFFQGVHLKVHLRSHTGEKPYECAVCDKKFTHVGHLNMHHRTHTGDKRYACSMCSKKFQDGGHLKKHIRTHTGEKSFECSICNGKFREADHLKRHLRTHTGEKPYECSVCNKKFSEGGTLKSHIRTHTGEKSFECSVCNKKFREDRTLKTHIRTHTGEKRFECSVCNMKFGESGTLTRHVRIHTGEQPYECSICNKKMRLAGQLKNHLLRYHTDEKPFECSVCNRKFIEATVLRKHLLIHTSEKPFECSFCNKKWRKPDDLKIHLRIHTGEKPFECILCNKKFSDVSPLKRHIRTHTGERPYKCLVCNKKFTQAGHLSKHQRTHTREKPFECSVCNQKFNEAEKLESHVRSHMEGIPSDSRETIQDDTLVSTAQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -