Basic Information

Insect: Thrips palmi
Gene Symbol: -
Assembly: GCA_012932325.1
Location: NW:21070918-21075201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 4.5e-05 0.0014 18.6 0.8 2 23 9 30 8 30 0.96

2 21 3.9e-05 0.0012 18.8 2.5 1 23 36 59 36 59 0.97

3 21 7.1e-06 0.00023 21.1 0.4 1 23 65 87 65 87 0.98

4 21 0.00081 0.026 14.7 4.7 1 23 93 115 93 115 0.99

5 21 7.2e-06 0.00023 21.1 1.7 1 23 120 142 120 142 0.98

6 21 0.00012 0.0037 17.3 3.1 1 23 148 170 148 170 0.98

7 21 0.00021 0.0066 16.5 1.1 1 23 176 198 176 198 0.98

8 21 8e-07 2.5e-05 24.1 3.3 1 23 204 226 204 226 0.98

9 21 0.00022 0.0071 16.4 1.3 1 23 232 254 232 254 0.96

10 21 1.7e-06 5.5e-05 23.1 3.9 1 23 260 282 260 282 0.98

11 21 5.3e-06 0.00017 21.5 4.5 1 23 288 310 288 310 0.98

12 21 0.00027 0.0087 16.1 1.4 1 23 316 338 316 338 0.98

13 21 1.6e-06 5.1e-05 23.2 3.8 1 23 344 366 344 366 0.99

14 21 1.1e-05 0.00036 20.5 4.7 1 23 372 394 372 394 0.97

15 21 0.0014 0.045 13.9 1.8 1 23 400 422 400 422 0.96

16 21 1.2e-05 0.00037 20.4 5.2 1 23 428 450 428 450 0.98

17 21 0.00089 0.028 14.5 3.7 1 23 456 478 456 478 0.98

18 21 1.2e-05 0.00037 20.5 0.3 1 23 485 507 485 507 0.98

19 21 0.0015 0.047 13.8 0.6 1 23 515 537 515 537 0.97

20 21 2.7e-06 8.5e-05 22.5 2.3 1 23 541 563 541 563 0.99

21 21 0.0015 0.049 13.8 0.2 1 23 576 598 576 598 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	4.5e-05	0.0014	18.6	0.8	2	23	9	30	8	30	0.96
2	21	3.9e-05	0.0012	18.8	2.5	1	23	36	59	36	59	0.97
3	21	7.1e-06	0.00023	21.1	0.4	1	23	65	87	65	87	0.98
4	21	0.00081	0.026	14.7	4.7	1	23	93	115	93	115	0.99
5	21	7.2e-06	0.00023	21.1	1.7	1	23	120	142	120	142	0.98
6	21	0.00012	0.0037	17.3	3.1	1	23	148	170	148	170	0.98
7	21	0.00021	0.0066	16.5	1.1	1	23	176	198	176	198	0.98
8	21	8e-07	2.5e-05	24.1	3.3	1	23	204	226	204	226	0.98
9	21	0.00022	0.0071	16.4	1.3	1	23	232	254	232	254	0.96
10	21	1.7e-06	5.5e-05	23.1	3.9	1	23	260	282	260	282	0.98
11	21	5.3e-06	0.00017	21.5	4.5	1	23	288	310	288	310	0.98
12	21	0.00027	0.0087	16.1	1.4	1	23	316	338	316	338	0.98
13	21	1.6e-06	5.1e-05	23.2	3.8	1	23	344	366	344	366	0.99
14	21	1.1e-05	0.00036	20.5	4.7	1	23	372	394	372	394	0.97
15	21	0.0014	0.045	13.9	1.8	1	23	400	422	400	422	0.96
16	21	1.2e-05	0.00037	20.4	5.2	1	23	428	450	428	450	0.98
17	21	0.00089	0.028	14.5	3.7	1	23	456	478	456	478	0.98
18	21	1.2e-05	0.00037	20.5	0.3	1	23	485	507	485	507	0.98
19	21	0.0015	0.047	13.8	0.6	1	23	515	537	515	537	0.97
20	21	2.7e-06	8.5e-05	22.5	2.3	1	23	541	563	541	563	0.99
21	21	0.0015	0.049	13.8	0.2	1	23	576	598	576	598	0.93

Sequence Information

Coding Sequence: ATGGAGCTAGTAGATGCATCGTTGAACTGCTCTGTGTGTCTGAAGAAGTTCTCCTCCAAAGTTACCTTGGCTAAACACTTAAGGATTCACTCTGCTGAGAAGTCGTTTAAGTGCTCAGAGTGTCCAAAAGAGTTTCATCGTTCTGATGACCTAAAATATCATCTTATTAGCAAGCATAGCAATGAGAAAGCATATGAATGCTCTGTGTGCCAGAAGCGCTTCATCACCTCTGGGCAACTTGCGTCGCATGTTCAGAGGCACTCTGCTGATAAACCATACAAGTGTTCAGTTTGCAAAAAACAATTCGTTTGTAAAAGTGACCTTTCTAAACACACCAGAATACACACTGTTCGAATGTTCGAATGTTCAATGTGTTCGAAGAAATTCGTTCGGCTCGCTCATCTCAAGGTCCATCTGCGAGCACACACCGGTGAAAGGCCGTTTGAGTGCGGCGTCTGCCATAAACGCTTTTCGTACTCGAGAAGCCTTTCGTCCCATTCTCGAATCCACACGGACGAGAAGCCGTTTGAGTGTTCGGTGTGCTTCCAAAAATTTCGATTCTCAGGCGGTCTGCAGACTCACCTACTTACTCACACTGGCGAGAAATCGTTTGAGTGCAGTCTATGTCCGAAAAAGTTCCGAAGACGTGGTCACCTCGAAAATCACCTAAGAAGGCACTCGGatgaaaaaccgtatgagtgCTCCGTATGCCAAAAACGTTTTAGTGTCGCTGACGGCCTGAGGAACCATTGTCGAATCCACACTGACGAGAAACCCTTTGAATGTTCAGTGTGTGGCACAAAATTCCGTACCTCAACCGACCTCCATCGTCACCAGAAAACGCACACAGGTGAGAAACCTTTTGAGTGCAGTCTGTGCTCGAAGAAGTTCCGTCGCAGCAGCCATCTCAAACAACACCTTGCAAGGCACTCTGatgaaaaaccgtatgagtgCTCCGTATGCCAAAAACGTTTTAGGGTCGCTGAAGACCTGGCCTCCCATTGTCGAACCCACACTGACGAGAAACCCTTTGAATGTTCAGTGTGTGGTAGAAAATTCCGAACCTCAACCCAGCTCCATCTTCACCAGCGAACGCACACAGGTGAGAAATCTTTTGAGTGCAGTCTGTGCTCGAAGAAGTTCCGTCGCAGCAGCCATCTCAAACAACACCTTGTAAGGCACTCTGatgaaaaaccgtatgagtgCACCGTATGCCAAAAACGTTTTTATGTCGCTGAAGGCCTTAAGAACCATTGTCGAATCCACACTGACGAGAAACCCTTTGAATGTTCAGTGTGTGGTCGAAAATTCCGAACCTCAACCCACCTCCATCTTCACCTGCAAACGCACACGGGTGAGAAATCTTTTGAGTGCACCGTGTGTTCAAAGAAATTCGGAAGACGTGACCACCTGAACTTCCATCTGCAGACGCATGCTTATCGTGAAAGGTCGTTTGAGTGCACTGTGTGCCTGAAATCTTTTACCCGCAACGAGTACCTGGCCATTCACGCTCGAATTCATGTTGCTGATGACCTGAAACCCCATGAGTGTTCCGTGTGTGGAAAGAAATACTTAAGCACAGGTCAACTAAACGCCCACGTCAAGGTCCATTCGAAACTGTTCCAGTGCGAAGAATGCTCCAAGAGATTTGGGACGTTGGCGCACCTTAAAAGGCATCTCTTGACGCACACTTCCTCGCGTCACAGAATTTCCACTCATTTCACATTTTTATGCACCGAGTGTGGGATCCGGTATGACCGGCGGGATGCATTGTTAAGTCACTTGTATGAACATCTCAAGAACTTCTGA
Protein Sequence: MELVDASLNCSVCLKKFSSKVTLAKHLRIHSAEKSFKCSECPKEFHRSDDLKYHLISKHSNEKAYECSVCQKRFITSGQLASHVQRHSADKPYKCSVCKKQFVCKSDLSKHTRIHTVRMFECSMCSKKFVRLAHLKVHLRAHTGERPFECGVCHKRFSYSRSLSSHSRIHTDEKPFECSVCFQKFRFSGGLQTHLLTHTGEKSFECSLCPKKFRRRGHLENHLRRHSDEKPYECSVCQKRFSVADGLRNHCRIHTDEKPFECSVCGTKFRTSTDLHRHQKTHTGEKPFECSLCSKKFRRSSHLKQHLARHSDEKPYECSVCQKRFRVAEDLASHCRTHTDEKPFECSVCGRKFRTSTQLHLHQRTHTGEKSFECSLCSKKFRRSSHLKQHLVRHSDEKPYECTVCQKRFYVAEGLKNHCRIHTDEKPFECSVCGRKFRTSTHLHLHLQTHTGEKSFECTVCSKKFGRRDHLNFHLQTHAYRERSFECTVCLKSFTRNEYLAIHARIHVADDLKPHECSVCGKKYLSTGQLNAHVKVHSKLFQCEECSKRFGTLAHLKRHLLTHTSSRHRISTHFTFLCTECGIRYDRRDALLSHLYEHLKNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -